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High-Efficiency Targeted Editing of Large Viral Genomes by RNA-Guided Nucleases


The clustered regularly interspaced short palindromic repeats (CRISPR)-associated (Cas) system was discovered as a component of the bacterial acquired immune system that cleaves foreign DNA. This system is now used for site-specific genome editing in a wide range of organisms, including bacteria, yeasts, plants, and animals. However, the use of this approach in non-cell organisms, such as non-integrating viruses, has not been reported. Because multiple steps are required to construct mutant or recombinant DNA viruses with large genomes using the current approaches, we used the CRISPR-Cas9 system to introduce site-specific indels and insert a foreign gene into an adenoviral vector and wild-type herpes simplex virus. The high efficiency of CRISPR-Cas9 editing allowed for simple construction and purification of recombinant progeny virus. We believe that this new technique will have broad practical significance for selecting attenuated vaccine strains and antiviral drugs, constructing gene therapy vectors, and establishing efficient methods for viral biological studies.


Vyšlo v časopise: High-Efficiency Targeted Editing of Large Viral Genomes by RNA-Guided Nucleases. PLoS Pathog 10(5): e32767. doi:10.1371/journal.ppat.1004090
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.ppat.1004090

Souhrn

The clustered regularly interspaced short palindromic repeats (CRISPR)-associated (Cas) system was discovered as a component of the bacterial acquired immune system that cleaves foreign DNA. This system is now used for site-specific genome editing in a wide range of organisms, including bacteria, yeasts, plants, and animals. However, the use of this approach in non-cell organisms, such as non-integrating viruses, has not been reported. Because multiple steps are required to construct mutant or recombinant DNA viruses with large genomes using the current approaches, we used the CRISPR-Cas9 system to introduce site-specific indels and insert a foreign gene into an adenoviral vector and wild-type herpes simplex virus. The high efficiency of CRISPR-Cas9 editing allowed for simple construction and purification of recombinant progeny virus. We believe that this new technique will have broad practical significance for selecting attenuated vaccine strains and antiviral drugs, constructing gene therapy vectors, and establishing efficient methods for viral biological studies.


Zdroje

1. WymanC, KanaarR (2006) DNA double-strand break repair: all's well that ends well. Annu Rev Genet 40: 363–383.

2. UrnovFD, RebarEJ, HolmesMC, ZhangHS, GregoryPD (2010) Genome editing with engineered zinc finger nucleases. Nat Rev Genet 11: 636–646.

3. BogdanoveAJ, VoytasDF (2011) TAL effectors: customizable proteins for DNA targeting. Science 333: 1843–1846.

4. HorvathP, BarrangouR (2010) CRISPR/Cas, the immune system of bacteria and archaea. Science 327: 167–170.

5. DeveauH, GarneauJE, MoineauS (2010) CRISPR/Cas system and its role in phage-bacteria interactions. Annu Rev Microbiol 64: 475–493.

6. PougachK, SemenovaE, BogdanovaE, DatsenkoKA, DjordjevicM, et al. (2010) Transcription, processing and function of CRISPR cassettes in Escherichia coli. Mol Microbiol 77: 1367–1379.

7. DeltchevaE, ChylinskiK, SharmaCM, GonzalesK, ChaoY, et al. (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471: 602–607.

8. JinekM, ChylinskiK, FonfaraI, HauerM, DoudnaJA, et al. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337: 816–821.

9. ChoSW, KimS, KimJM, KimJS (2013) Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat Biotechnol 31: 230–232.

10. MaliP, YangL, EsveltKM, AachJ, GuellM, et al. (2013) RNA-guided human genome engineering via Cas9. Science 339: 823–826.

11. JinekM, EastA, ChengA, LinS, MaE, et al. (2013) RNA-programmed genome editing in human cells. Elife 2: e00471.

12. CongL, RanFA, CoxD, LinS, BarrettoR, et al. (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339: 819–823.

13. JiangW, BikardD, CoxD, ZhangF, MarraffiniLA (2013) RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol 31: 233–239.

14. BikardD, JiangW, SamaiP, HochschildA, ZhangF, et al. (2013) Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res 41: 7429–37.

15. ShanQ, WangY, LiJ, ZhangY, ChenK, et al. (2013) Targeted genome modification of crop plants using a CRISPR-Cas system. Nat Biotechnol 31: 686–688.

16. LiJF, NorvilleJE, AachJ, McCormackM, ZhangD, et al. (2013) Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat Biotechnol 31: 688–691.

17. NekrasovV, StaskawiczB, WeigelD, JonesJD, KamounS (2013) Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat Biotechnol 31: 691–693.

18. HwangWY, FuY, ReyonD, MaederML, TsaiSQ, et al. (2013) Efficient genome editing in zebrafish using a CRISPR-Cas system. Nat Biotechnol 31: 227–229.

19. JaoLE, WenteSR, ChenW (2013) Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system. Proc Natl Acad Sci U S A 110: 13904–13909.

20. WangH, YangH, ShivalilaCS, DawlatyMM, ChengAW, et al. (2013) One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell 153: 910–918.

21. LiD, QiuZ, ShaoY, ChenY, GuanY, et al. (2013) Heritable gene targeting in the mouse and rat using a CRISPR-Cas system. Nat Biotechnol 31: 681–683.

22. LiW, TengF, LiT, ZhouQ (2013) Simultaneous generation and germline transmission of multiple gene mutations in rat using CRISPR-Cas systems. Nat Biotechnol 31: 684–686.

23. DiCarloJE, NorvilleJE, MaliP, RiosX, AachJ, et al. (2013) Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems. Nucleic Acids Res 41: 4336–4343.

24. FuY, FodenJA, KhayterC, MaederML, ReyonD, et al. (2013) High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol 31: 822–26.

25. HsuPD, ScottDA, WeinsteinJA, RanFA, KonermannS, et al. (2013) DNA targeting specificity of RNA-guided Cas9 nucleases. Nat Biotechnol 31: 827–832.

26. MaliP, AachJ, StrangesPB, EsveltKM, MoosburnerM, et al. (2013) CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat Biotechnol 31: 833–838.

27. PattanayakV, LinS, GuilingerJP, MaE, DoudnaJA, et al. (2013) High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity. Nat Biotechnol 31: 839–843.

28. RanFA, HsuPD, LinCY, GootenbergJS, KonermannS, et al. (2013) Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity. Cell 154: 1380–1389.

29. PhilippeN, LegendreM, DoutreG, CouteY, PoirotO, et al. (2013) Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 341: 281–286.

30. MocarskiES, PostLE, RoizmanB (1980) Molecular engineering of the herpes simplex virus genome: insertion of a second L-S junction into the genome causes additional genome inversions. Cell 22: 243–255.

31. AgarwallaPK, AghiMK (2012) Oncolytic herpes simplex virus engineering and preparation. Methods Mol Biol 797: 1–19.

32. EbinaH, MisawaN, KanemuraY, KoyanagiY (2013) Harnessing the CRISPR/Cas9 system to disrupt latent HIV-1 provirus. Sci Rep 3: 2510.

33. CremerT, CremerC (2001) Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet 2: 292–301.

34. QiLS, LarsonMH, GilbertLA, DoudnaJA, WeissmanJS, et al. (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152: 1173–1183.

35. WuZX, ZhangZH, DongSZ, CunW (2013) Titration of recombinant adenovirus in liver cell line by enhanced green fluorescent protein reporter virus. Journal of Yunnan University S1: 43–48.

36. YuX, LiuL, WuL, WangL, DongC, et al. (2010) Herpes simplex virus type 1 tegument protein VP22 is capable of modulating the transcription of viral TK and gC genes via interaction with viral ICP0. Biochimie 92: 1024–1030.

Štítky
Hygiena a epidemiológia Infekčné lekárstvo Laboratórium

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