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Proteotoxic Stress Induces Phosphorylation of p62/SQSTM1 by ULK1 to Regulate Selective Autophagic Clearance of Protein Aggregates


Accumulation of misfolded proteins deposited in the form of inclusion bodies is a common pathological hallmark for many human genetic diseases, particularly for the neurodegenerative disorders. The aggregation of the disease related proteins suggests a failure of the cellular machineries that maintain the protein homeostasis or proteostasis. The cellular clearance pathways, e.g. autophagy-lysosomal pathway, may not be of high efficiency in the face of rapid formation of misfolded protein aggregates. Thus, understanding of intrinsic mechanism whereby autophagy offers protection to cells by removing toxic protein aggregates is important. Here we report that a signaling transduction event that chemically modifies autophagy receptor protein p62/SQSTM1 regulates the receptor’s binding affinity to small molecule called ubiquitin(essential for marking the protein for degradation), as well as the selective degradation of targeted proteins. Furthermore, we find that expression of Huntington’s disease (HD) associated protein aggregates (containing polyglutamine or polyQ expansion) triggers the same modification of p62, which is dependent on the length of the polyQ expansion, suggesting a protective response of the cell by activating autophagy toward degradation of toxic aggregates. The modification of p62 also occurs in HD model brains in an age-dependent manner. Our study sheds light on the regulation of selective autophagy and provides a rationale for targeting p62 modification to treat aggregate diseases including HD.


Vyšlo v časopise: Proteotoxic Stress Induces Phosphorylation of p62/SQSTM1 by ULK1 to Regulate Selective Autophagic Clearance of Protein Aggregates. PLoS Genet 11(2): e32767. doi:10.1371/journal.pgen.1004987
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1004987

Souhrn

Accumulation of misfolded proteins deposited in the form of inclusion bodies is a common pathological hallmark for many human genetic diseases, particularly for the neurodegenerative disorders. The aggregation of the disease related proteins suggests a failure of the cellular machineries that maintain the protein homeostasis or proteostasis. The cellular clearance pathways, e.g. autophagy-lysosomal pathway, may not be of high efficiency in the face of rapid formation of misfolded protein aggregates. Thus, understanding of intrinsic mechanism whereby autophagy offers protection to cells by removing toxic protein aggregates is important. Here we report that a signaling transduction event that chemically modifies autophagy receptor protein p62/SQSTM1 regulates the receptor’s binding affinity to small molecule called ubiquitin(essential for marking the protein for degradation), as well as the selective degradation of targeted proteins. Furthermore, we find that expression of Huntington’s disease (HD) associated protein aggregates (containing polyglutamine or polyQ expansion) triggers the same modification of p62, which is dependent on the length of the polyQ expansion, suggesting a protective response of the cell by activating autophagy toward degradation of toxic aggregates. The modification of p62 also occurs in HD model brains in an age-dependent manner. Our study sheds light on the regulation of selective autophagy and provides a rationale for targeting p62 modification to treat aggregate diseases including HD.


Zdroje

1. Komatsu M, Waguri S, Chiba T, Murata S, Iwata J, et al. (2006) Loss of autophagy in the central nervous system causes neurodegeneration in mice. Nature 441: 880–884. 16625205

2. Kroemer G, Marino G, Levine B (2010) Autophagy and the integrated stress response. Mol Cell 40: 280–293. doi: 10.1016/j.molcel.2010.09.023 20965422

3. Kageyama S, Sou YS, Uemura T, Kametaka S, Saito T, et al. (2014) Proteasome Dysfunction Activates Autophagy and the Keap1-Nrf2 Pathway. J Biol Chem.

4. Lamb CA, Yoshimori T, Tooze SA (2013) The autophagosome: origins unknown, biogenesis complex. Nat Rev Mol Cell Biol 14: 759–774. 24201109

5. Yan J, Kuroyanagi H, Kuroiwa A, Matsuda Y, Tokumitsu H, et al. (1998) Identification of mouse ULK1, a novel protein kinase structurally related to C. elegans UNC-51. Biochem Biophys Res Commun 246: 222–227. 9600096

6. Kim J, Kundu M, Viollet B, Guan KL (2011) AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1. Nat Cell Biol 13: 132–141. doi: 10.1038/ncb2152 21258367

7. Hosokawa N, Hara T, Kaizuka T, Kishi C, Takamura A, et al. (2009) Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy. Mol Biol Cell 20: 1981–1991. doi: 10.1091/mbc.E08-12-1248 19211835

8. Jung CH, Jun CB, Ro SH, Kim YM, Otto NM, et al. (2009) ULK-Atg13-FIP200 complexes mediate mTOR signaling to the autophagy machinery. Mol Biol Cell 20: 1992–2003. doi: 10.1091/mbc.E08-12-1249 19225151

9. Russell RC, Tian Y, Yuan H, Park HW, Chang YY, et al. (2013) ULK1 induces autophagy by phosphorylating Beclin-1 and activating VPS34 lipid kinase. Nat Cell Biol 15: 741–750. doi: 10.1038/ncb2757 23685627

10. Loffler AS, Alers S, Dieterle AM, Keppeler H, Franz-Wachtel M, et al. (2011) Ulk1-mediated phosphorylation of AMPK constitutes a negative regulatory feedback loop. Autophagy 7: 696–706. 21460634

11. Di Bartolomeo S, Corazzari M, Nazio F, Oliverio S, Lisi G, et al. (2010) The dynamic interaction of AMBRA1 with the dynein motor complex regulates mammalian autophagy. J Cell Biol 191: 155–168. doi: 10.1083/jcb.201002100 20921139

12. Joo JH, Dorsey FC, Joshi A, Hennessy-Walters KM, Rose KL, et al. (2011) Hsp90-Cdc37 chaperone complex regulates Ulk1- and Atg13-mediated mitophagy. Mol Cell 43: 572–585. doi: 10.1016/j.molcel.2011.06.018 21855797

13. Papinski D, Schuschnig M, Reiter W, Wilhelm L, Barnes CA, et al. (2014) Early steps in autophagy depend on direct phosphorylation of Atg9 by the Atg1 kinase. Mol Cell 53: 471–483. doi: 10.1016/j.molcel.2013.12.011 24440502

14. Wu W, Tian W, Hu Z, Chen G, Huang L, et al. (2014) ULK1 translocates to mitochondria and phosphorylates FUNDC1 to regulate mitophagy. EMBO Rep 15: 566–575. doi: 10.1002/embr.201438501 24671035

15. Pike LR, Singleton DC, Buffa F, Abramczyk O, Phadwal K, et al. (2013) Transcriptional up-regulation of ULK1 by ATF4 contributes to cancer cell survival. Biochem J 449: 389–400. doi: 10.1042/BJ20120972 23078367

16. Stolz A, Ernst A, Dikic I (2014) Cargo recognition and trafficking in selective autophagy. Nat Cell Biol 16: 495–501. doi: 10.1038/ncb2979 24875736

17. Pankiv S, Clausen TH, Lamark T, Brech A, Bruun JA, et al. (2007) p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy. J Biol Chem 282: 24131–24145. 17580304

18. Rogov V, Dotsch V, Johansen T, Kirkin V (2014) Interactions between autophagy receptors and ubiquitin-like proteins form the molecular basis for selective autophagy. Mol Cell 53: 167–178. doi: 10.1016/j.molcel.2013.12.014 24462201

19. Clausen TH, Lamark T, Isakson P, Finley K, Larsen KB, et al. (2010) p62/SQSTM1 and ALFY interact to facilitate the formation of p62 bodies/ALIS and their degradation by autophagy. Autophagy 6: 330–344. 20168092

20. Filimonenko M, Isakson P, Finley KD, Anderson M, Jeong H, et al. (2010) The selective macroautophagic degradation of aggregated proteins requires the PI3P-binding protein Alfy. Mol Cell 38: 265–279. doi: 10.1016/j.molcel.2010.04.007 20417604

21. Kirkin V, Lamark T, Sou YS, Bjorkoy G, Nunn JL, et al. (2009) A role for NBR1 in autophagosomal degradation of ubiquitinated substrates. Mol Cell 33: 505–516. doi: 10.1016/j.molcel.2009.01.020 19250911

22. Komatsu M, Waguri S, Koike M, Sou YS, Ueno T, et al. (2007) Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice. Cell 131: 1149–1163. 18083104

23. Geisler S, Holmstrom KM, Skujat D, Fiesel FC, Rothfuss OC, et al. (2010) PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1. Nat Cell Biol 12: 119–131. doi: 10.1038/ncb2012 20098416

24. Pohl C, Jentsch S (2009) Midbody ring disposal by autophagy is a post-abscission event of cytokinesis. Nat Cell Biol 11: 65–70. doi: 10.1038/ncb1813 19079246

25. Kim PK, Hailey DW, Mullen RT, Lippincott-Schwartz J (2008) Ubiquitin signals autophagic degradation of cytosolic proteins and peroxisomes. Proc Natl Acad Sci U S A 105: 20567–20574. doi: 10.1073/pnas.0810611105 19074260

26. Zheng YT, Shahnazari S, Brech A, Lamark T, Johansen T, et al. (2009) The adaptor protein p62/SQSTM1 targets invading bacteria to the autophagy pathway. J Immunol 183: 5909–5916. doi: 10.4049/jimmunol.0900441 19812211

27. Matsumoto G, Wada K, Okuno M, Kurosawa M, Nukina N (2011) Serine 403 phosphorylation of p62/SQSTM1 regulates selective autophagic clearance of ubiquitinated proteins. Mol Cell 44: 279–289. doi: 10.1016/j.molcel.2011.07.039 22017874

28. Pilli M, Arko-Mensah J, Ponpuak M, Roberts E, Master S, et al. (2012) TBK-1 promotes autophagy-mediated antimicrobial defense by controlling autophagosome maturation. Immunity 37: 223–234. doi: 10.1016/j.immuni.2012.04.015 22921120

29. Ro SH, Semple IA, Park H, Park H, Park HW, et al. (2014) Sestrin2 promotes Unc-51-like kinase 1 mediated phosphorylation of p62/sequestosome-1. FEBS J.

30. Itakura E, Mizushima N (2011) p62 Targeting to the autophagosome formation site requires self-oligomerization but not LC3 binding. J Cell Biol 192: 17–27. doi: 10.1083/jcb.201009067 21220506

31. Chan EY, Longatti A, McKnight NC, Tooze SA (2009) Kinase-inactivated ULK proteins inhibit autophagy via their conserved C-terminal domains using an Atg13-independent mechanism. Mol Cell Biol 29: 157–171. doi: 10.1128/MCB.01082-08 18936157

32. Ichimura Y, Kumanomidou T, Sou YS, Mizushima T, Ezaki J, et al. (2008) Structural basis for sorting mechanism of p62 in selective autophagy. J Biol Chem 283: 22847–22857. doi: 10.1074/jbc.M802182200 18524774

33. Yamamoto A, Cremona ML, Rothman JE (2006) Autophagy-mediated clearance of huntingtin aggregates triggered by the insulin-signaling pathway. J Cell Biol 172: 719–731. 16505167

34. (1993) A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington’s disease chromosomes. The Huntington’s Disease Collaborative Research Group. Cell 72: 971–983. 8458085

35. Kumari S, Redouane Y, Lopez-Mosqueda J, Shiraishi R, Romanowska M, et al. (2014) Sharpin prevents skin inflammation by inhibiting TNFR1-induced keratinocyte apoptosis. Elife 3.

36. Menalled LB, Kudwa AE, Miller S, Fitzpatrick J, Watson-Johnson J, et al. (2012) Comprehensive behavioral and molecular characterization of a new knock-in mouse model of Huntington’s disease: zQ175. PLoS One 7: e49838. doi: 10.1371/journal.pone.0049838 23284626

37. Friedman LG, Lachenmayer ML, Wang J, He L, Poulose SM, et al. (2012) Disrupted autophagy leads to dopaminergic axon and dendrite degeneration and promotes presynaptic accumulation of alpha-synuclein and LRRK2 in the brain. J Neurosci 32: 7585–7593. doi: 10.1523/JNEUROSCI.5809-11.2012 22649237

38. Kundu M, Lindsten T, Yang CY, Wu J, Zhao F, et al. (2008) Ulk1 plays a critical role in the autophagic clearance of mitochondria and ribosomes during reticulocyte maturation. Blood 112: 1493–1502. doi: 10.1182/blood-2008-02-137398 18539900

39. Seibenhener ML, Babu JR, Geetha T, Wong HC, Krishna NR, et al. (2004) Sequestosome 1/p62 is a polyubiquitin chain binding protein involved in ubiquitin proteasome degradation. Mol Cell Biol 24: 8055–8068. 15340068

40. Long J, Gallagher TR, Cavey JR, Sheppard PW, Ralston SH, et al. (2008) Ubiquitin recognition by the ubiquitin-associated domain of p62 involves a novel conformational switch. J Biol Chem 283: 5427–5440. 18083707

41. Isogai S, Morimoto D, Arita K, Unzai S, Tenno T, et al. (2011) Crystal structure of the ubiquitin-associated(UBA) domain of p62 and its interaction with ubiquitin. J Biol Chem 286: 31864–31874. doi: 10.1074/jbc.M111.259630 21715324

42. Long J, Garner TP, Pandya MJ, Craven CJ, Chen P, et al. (2010) Dimerisation of the UBA domain of p62 inhibits ubiquitin binding and regulates NF-kappaB signalling. J Mol Biol 396: 178–194. doi: 10.1016/j.jmb.2009.11.032 19931284

43. Wong E, Bejarano E, Rakshit M, Lee K, Hanson HH, et al. (2012) Molecular determinants of selective clearance of protein inclusions by autophagy. Nat Commun 3: 1240. doi: 10.1038/ncomms2244 23212369

44. Kurosawa M, Matsumoto G, Kino Y, Okuno M, Kurosawa-Yamada M, et al. (2014) Depletion of p62 reduces nuclear inclusions and paradoxically ameliorates disease phenotypes in Huntington’s model mice. Hum Mol Genet.

45. Doi H, Adachi H, Katsuno M, Minamiyama M, Matsumoto S, et al. (2013) p62/SQSTM1 differentially removes the toxic mutant androgen receptor via autophagy and inclusion formation in a spinal and bulbar muscular atrophy mouse model. J Neurosci 33: 7710–7727. doi: 10.1523/JNEUROSCI.3021-12.2013 23637164

46. Moscat J, Diaz-Meco MT (2012) p62: a versatile multitasker takes on cancer. Trends Biochem Sci 37: 230–236. doi: 10.1016/j.tibs.2012.02.008 22424619

47. Pankiv S, Lamark T, Bruun JA, Overvatn A, Bjorkoy G, et al. (2010) Nucleocytoplasmic shuttling of p62/SQSTM1 and its role in recruitment of nuclear polyubiquitinated proteins to promyelocytic leukemia bodies. J Biol Chem 285: 5941–5953. doi: 10.1074/jbc.M109.039925 20018885

48. Raasi S, Varadan R, Fushman D, Pickart CM (2005) Diverse polyubiquitin interaction properties of ubiquitin-associated domains. Nat Struct Mol Biol 12: 708–714. 16007098

49. Hao R, Nanduri P, Rao Y, Panichelli RS, Ito A, et al. (2013) Proteasomes activate aggresome disassembly and clearance by producing unanchored ubiquitin chains. Mol Cell 51: 819–828. doi: 10.1016/j.molcel.2013.08.016 24035499

50. Korolchuk VI, Mansilla A, Menzies FM, Rubinsztein DC (2009) Autophagy inhibition compromises degradation of ubiquitin-proteasome pathway substrates. Mol Cell 33: 517–527. doi: 10.1016/j.molcel.2009.01.021 19250912

51. Johnston JA, Ward CL, Kopito RR (1998) Aggresomes: a cellular response to misfolded proteins. J Cell Biol 143: 1883–1898. 9864362

52. Bjorkoy G, Lamark T, Brech A, Outzen H, Perander M, et al. (2005) p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death. J Cell Biol 171: 603–614. 16286508

53. Ichimura Y, Waguri S, Sou YS, Kageyama S, Hasegawa J, et al. (2013) Phosphorylation of p62 activates the Keap1-Nrf2 pathway during selective autophagy. Mol Cell 51: 618–631. doi: 10.1016/j.molcel.2013.08.003 24011591

54. Pan JA, Ullman E, Dou Z, Zong WX (2011) Inhibition of protein degradation induces apoptosis through a microtubule-associated protein 1 light chain 3-mediated activation of caspase-8 at intracellular membranes. Mol Cell Biol 31: 3158–3170. doi: 10.1128/MCB.05460-11 21628531

55. Zhong Y, Wang QJ, Li X, Yan Y, Backer JM, et al. (2009) Distinct regulation of autophagic activity by Atg14L and Rubicon associated with Beclin 1-phosphatidylinositol-3-kinase complex. Nat Cell Biol 11: 468–476. doi: 10.1038/ncb1854 19270693

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