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A Comprehensive Analysis of Replicating Merkel Cell Polyomavirus Genomes Delineates the Viral Transcription Program and Suggests a Role for mcv-miR-M1 in Episomal Persistence


MCPyV is a recently discovered human polyomavirus that is likely to cause the majority of cases of Merkel cell carcinoma (MCC), a rare but highly aggressive skin cancer. While much research has been focused on understanding transforming functions of MCPyV gene products, owing to the lack of fully permissive replication systems, the natural lifecycle of the virus is poorly understood. Using high-throughput analyses, here we have interrogated a semi-permissive replication system to study the viral transcription program and elucidate the functions of the viral microRNA (miRNA) mcv-miR-M1. We find that, similar to other polyomavirus miRNAs, mcv-miR-M1 has the ability to negatively regulate expression of viral gene products required for viral DNA replication. Unexpectedly, however, we also observe that mcv-miR-M1 augments long-term episomal persistence of MCPyV genomes. Given that MCPyV establishes persistent infections in the majority of healthy human adults, our observations shed new light on the mechanisms that may be employed by this tumor virus to mount a lifelong chronic infection of its host.


Vyšlo v časopise: A Comprehensive Analysis of Replicating Merkel Cell Polyomavirus Genomes Delineates the Viral Transcription Program and Suggests a Role for mcv-miR-M1 in Episomal Persistence. PLoS Pathog 11(7): e32767. doi:10.1371/journal.ppat.1004974
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.ppat.1004974

Souhrn

MCPyV is a recently discovered human polyomavirus that is likely to cause the majority of cases of Merkel cell carcinoma (MCC), a rare but highly aggressive skin cancer. While much research has been focused on understanding transforming functions of MCPyV gene products, owing to the lack of fully permissive replication systems, the natural lifecycle of the virus is poorly understood. Using high-throughput analyses, here we have interrogated a semi-permissive replication system to study the viral transcription program and elucidate the functions of the viral microRNA (miRNA) mcv-miR-M1. We find that, similar to other polyomavirus miRNAs, mcv-miR-M1 has the ability to negatively regulate expression of viral gene products required for viral DNA replication. Unexpectedly, however, we also observe that mcv-miR-M1 augments long-term episomal persistence of MCPyV genomes. Given that MCPyV establishes persistent infections in the majority of healthy human adults, our observations shed new light on the mechanisms that may be employed by this tumor virus to mount a lifelong chronic infection of its host.


Zdroje

1. Feng H, Shuda M, Chang Y, Moore PS. Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science. 2008;319(5866):1096–100. doi: 10.1126/science.1152586 18202256

2. Chang Y, Moore PS. Merkel cell carcinoma: a virus-induced human cancer. Annu Rev Pathol. 2012;7:123–44. doi: 10.1146/annurev-pathol-011110-130227 21942528

3. Tolstov YL, Pastrana DV, Feng H, Becker JC, Jenkins FJ, Moschos S, et al. Human Merkel cell polyomavirus infection II. MCV is a common human infection that can be detected by conformational capsid epitope immunoassays. Int J Cancer. 2009;125(6):1250–6. doi: 10.1002/ijc.24509 19499548

4. Schowalter RM, Pastrana DV, Pumphrey KA, Moyer AL, Buck CB. Merkel cell polyomavirus and two previously unknown polyomaviruses are chronically shed from human skin. Cell Host Microbe. 2010;7(6):509–15. doi: 10.1016/j.chom.2010.05.006 20542254

5. Chen T, Hedman L, Mattila PS, Jartti T, Ruuskanen O, Soderlund-Venermo M, et al. Serological evidence of Merkel cell polyomavirus primary infections in childhood. J Clin Virol. 2011;50(2):125–9. doi: 10.1016/j.jcv.2010.10.015 21094082

6. Pastrana DV, Wieland U, Silling S, Buck CB, Pfister H. Positive correlation between Merkel cell polyomavirus viral load and capsid-specific antibody titer. Med Microbiol Immunol. 2012;201(1):17–23. doi: 10.1007/s00430-011-0200-7 21614514

7. Zhang C, Liu F, He Z, Deng Q, Pan Y, Liu Y, et al. Seroprevalence of Merkel cell polyomavirus in the general rural population of Anyang, China. PLoS One. 2014;9(9):e106430. doi: 10.1371/journal.pone.0106430 25184447

8. Shuda M, Feng H, Kwun HJ, Rosen ST, Gjoerup O, Moore PS, et al. T antigen mutations are a human tumor-specific signature for Merkel cell polyomavirus. Proc Natl Acad Sci U S A. 2008;105(42):16272–7. doi: 10.1073/pnas.0806526105 18812503

9. Schowalter RM, Buck CB. The Merkel cell polyomavirus minor capsid protein. PLoS Pathog. 2013;9(8):e1003558. doi: 10.1371/journal.ppat.1003558 23990782

10. Carter JJ, Daugherty MD, Qi X, Bheda-Malge A, Wipf GC, Robinson K, et al. Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes. Proc Natl Acad Sci U S A. 2013;110(31):12744–9. doi: 10.1073/pnas.1303526110 23847207

11. Seo GJ, Chen CJ, Sullivan CS. Merkel cell polyomavirus encodes a microRNA with the ability to autoregulate viral gene expression. Virology. 2009;383(2):183–7. doi: 10.1016/j.virol.2008.11.001 19046593

12. Bartel D. MicroRNAs: Genomics, Biogenesis, Mechanism, and Function. Cell Press. 2004;116:281–97.

13. Bartel DP. MicroRNAs: target recognition and regulatory functions. Cell. 2009;136(2):215–33. doi: 10.1016/j.cell.2009.01.002 19167326

14. Cantalupo P, Doering A, Sullivan CS, Pal A, Peden KW, Lewis AM, et al. Complete nucleotide sequence of polyomavirus SA12. J Virol. 2005;79(20):13094–104. 16189011

15. Sullivan CS, Sung CK, Pack CD, Grundhoff A, Lukacher AE, Benjamin TL, et al. Murine Polyomavirus encodes a microRNA that cleaves early RNA transcripts but is not essential for experimental infection. Virology. 2009;387(1):157–67. doi: 10.1016/j.virol.2009.02.017 19272626

16. Sullivan CS, Grundhoff AT, Tevethia S, Pipas JM, Ganem D. SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells. Nature. 2005;435(7042):682–6. 15931223

17. Seo GJ, Fink LH, O'Hara B, Atwood WJ, Sullivan CS. Evolutionarily conserved function of a viral microRNA. J Virol. 2008;82(20):9823–8. doi: 10.1128/JVI.01144-08 18684810

18. Chen CJ, Cox JE, Kincaid RP, Martinez A, Sullivan CS. Divergent MicroRNA targetomes of closely related circulating strains of a polyomavirus. J Virol. 2013;87(20):11135–47. doi: 10.1128/JVI.01711-13 23926342

19. Chen CJ, Cox JE, Azarm KD, Wylie KN, Woolard KD, Pesavento PA, et al. Identification of a polyomavirus microRNA highly expressed in tumors. Virology. 2014;476C:43–53.

20. Broekema NM, Imperiale MJ. miRNA regulation of BK polyomavirus replication during early infection. Proc Natl Acad Sci U S A. 2013;110(20):8200–5. doi: 10.1073/pnas.1301907110 23630296

21. Zhang S, Sroller V, Zanwar P, Chen CJ, Halvorson SJ, Ajami NJ, et al. Viral microRNA effects on pathogenesis of polyomavirus SV40 infections in syrian golden hamsters. PLoS Pathog. 2014;10(2):e1003912. doi: 10.1371/journal.ppat.1003912 24516384

22. Grundhoff A, Sullivan CS. Virus-encoded microRNAs. Virology. 2011;411(2):325–43. doi: 10.1016/j.virol.2011.01.002 21277611

23. Cullen BR. Viruses and microRNAs: RISCy interactions with serious consequences. Genes Dev. 2011;25(18):1881–94. doi: 10.1101/gad.17352611 21896651

24. Lagatie O, Tritsmans L, Stuyver LJ. The miRNA world of polyomaviruses. Virol J. 2013;10:268. doi: 10.1186/1743-422X-10-268 23984639

25. Kincaid RP, Sullivan CS. Virus-encoded microRNAs: an overview and a look to the future. PLoS Pathog. 2012;8(12):e1003018. doi: 10.1371/journal.ppat.1003018 23308061

26. Imperiale MJ. Polyomavirus miRNAs: the beginning. Curr Opin Virol. 2014;7:29–32. doi: 10.1016/j.coviro.2014.03.012 24747718

27. Neumann F, Borchert S, Schmidt C, Reimer R, Hohenberg H, Fischer N, et al. Replication, gene expression and particle production by a consensus Merkel Cell Polyomavirus (MCPyV) genome. PLoS One. 2011;6(12):e29112. doi: 10.1371/journal.pone.0029112 22216177

28. Feng H, Kwun HJ, Liu X, Gjoerup O, Stolz DB, Chang Y, et al. Cellular and viral factors regulating Merkel cell polyomavirus replication. PLoS One. 2011;6(7):e22468. doi: 10.1371/journal.pone.0022468 21799863

29. Schowalter RM, Pastrana DV, Buck CB. Glycosaminoglycans and sialylated glycans sequentially facilitate Merkel cell polyomavirus infectious entry. PLoS Pathog. 2011;7(7):e1002161. doi: 10.1371/journal.ppat.1002161 21829355

30. Schowalter RM, Reinhold WC, Buck CB. Entry tropism of BK and Merkel cell polyomaviruses in cell culture. PLoS One. 2012;7(7):e42181. doi: 10.1371/journal.pone.0042181 22860078

31. Shuda M, Arora R, Kwun HJ, Feng H, Sarid R, Fernandez-Figueras MT, et al. Human Merkel cell polyomavirus infection I. MCV T antigen expression in Merkel cell carcinoma, lymphoid tissues and lymphoid tumors. Int J Cancer. 2009;125(6):1243–9. doi: 10.1002/ijc.24510 19499546

32. Mertz KD, Junt T, Schmid M, Pfaltz M, Kempf W. Inflammatory monocytes are a reservoir for Merkel cell polyomavirus. J Invest Dermatol. 2010;130(4):1146–51. doi: 10.1038/jid.2009.392 20016500

33. Zur Hausen A, Rennspiess D, Winnepenninckx V, Speel EJ, Kurz AK. Early B-cell differentiation in Merkel cell carcinomas: clues to cellular ancestry. Cancer Res. 2013;73(16):4982–7. doi: 10.1158/0008-5472.CAN-13-0616 23576560

34. Lee S, Paulson KG, Murchison EP, Afanasiev OK, Alkan C, Leonard JH, et al. Identification and validation of a novel mature microRNA encoded by the Merkel cell polyomavirus in human Merkel cell carcinomas. J Clin Virol. 2011;52(3):272–5. doi: 10.1016/j.jcv.2011.08.012 21907614

35. Xie H, Lee L, Caramuta S, Hoog A, Browaldh N, Bjornhagen V, et al. MicroRNA expression patterns related to merkel cell polyomavirus infection in human merkel cell carcinoma. J Invest Dermatol. 2014;134(2):507–17. doi: 10.1038/jid.2013.355 23962809

36. Hafner M, Renwick N, Brown M, Mihailovic A, Holoch D, Lin C, et al. RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries. RNA. 2011;17(9):1697–712. doi: 10.1261/rna.2799511 21775473

37. Jayaprakash AD, Jabado O, Brown BD, Sachidanandam R. Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing. Nucleic Acids Res. 2011;39(21):e141. doi: 10.1093/nar/gkr693 21890899

38. Raabe CA, Hoe CH, Randau G, Brosius J, Tang TH, Rozhdestvensky TS. The rocks and shallows of deep RNA sequencing: Examples in the Vibrio cholerae RNome. RNA. 2011;17(7):1357–66. doi: 10.1261/rna.2682311 21610211

39. Raabe CA, Tang TH, Brosius J, Rozhdestvensky TS. Biases in small RNA deep sequencing data. Nucleic Acids Res. 2013.

40. Huang X, Yuan T, Tschannen M, Sun Z, Jacob H, Du M, et al. Characterization of human plasma-derived exosomal RNAs by deep sequencing. BMC Genomics. 2013;14:319. doi: 10.1186/1471-2164-14-319 23663360

41. Kwun HJ, Guastafierro A, Shuda M, Meinke G, Bohm A, Moore PS, et al. The minimum replication origin of merkel cell polyomavirus has a unique large T-antigen loading architecture and requires small T-antigen expression for optimal replication. J Virol. 2009;83(23):12118–28. doi: 10.1128/JVI.01336-09 19759150

42. Harrison CJ, Meinke G, Kwun HJ, Rogalin H, Phelan PJ, Bullock PA, et al. Asymmetric assembly of Merkel cell polyomavirus large T-antigen origin binding domains at the viral origin. J Mol Biol. 2011;409(4):529–42. doi: 10.1016/j.jmb.2011.03.051 21501625

43. Bollag B, Kilpatrick LH, Tyagarajan SK, Tevethia MJ, Frisque RJ. JC virus T'135, T'136 and T'165 proteins interact with cellular p107 and p130 in vivo and influence viral transformation potential. J Neurovirol. 2006;12(6):428–42. 17162659

44. Tyagarajan SK, Frisque RJ. Stability and function of JC virus large T antigen and T' proteins are altered by mutation of their phosphorylated threonine 125 residues. J Virol. 2006;80(5):2083–91. 16474116

45. Frisque RJ, Bollag B, Tyagarajan SK, Kilpatrick LH. T' proteins influence JC virus biology. J Neurovirol. 2003;9 Suppl 1:15–20. 12709866

46. Frisque RJ. Structure and function of JC virus T' proteins. J Neurovirol. 2001;7(4):293–7. 11517405

47. Prins C, Frisque RJ. JC virus T' proteins encoded by alternatively spliced early mRNAs enhance T antigen-mediated viral DNA replication in human cells. J Neurovirol. 2001;7(3):250–64. 11517399

48. Bollag B, Prins C, Snyder EL, Frisque RJ. Purified JC virus T and T' proteins differentially interact with the retinoblastoma family of tumor suppressor proteins. Virology. 2000;274(1):165–78. 10936097

49. Trowbridge PW, Frisque RJ. Identification of three new JC virus proteins generated by alternative splicing of the early viral mRNA. J Neurovirol. 1995;1(2):195–206. 9222358

50. Hyde-DeRuyscher R, Carmichael GG. Polyomavirus early-late switch is not regulated at the level of transcription initiation and is associated with changes in RNA processing. Proc Natl Acad Sci U S A. 1988;85(23):8993–7. 2848251

51. Adami GR, Marlor CW, Barrett NL, Carmichael GG. Leader-to-leader splicing is required for efficient production and accumulation of polyomavirus late mRNAs. J Virol. 1989;63(1):85–93. 2535755

52. Hyde-DeRuyscher RP, Carmichael GG. Polyomavirus late pre-mRNA processing: DNA replication-associated changes in leader exon multiplicity suggest a role for leader-to-leader splicing in the early-late switch. J Virol. 1990;64(12):5823–32. 2173769

53. Liu Z, Carmichael GG. Polyoma virus early-late switch: regulation of late RNA accumulation by DNA replication. Proc Natl Acad Sci U S A. 1993;90(18):8494–8. 8397407

54. Gu R, Zhang Z, DeCerbo JN, Carmichael GG. Gene regulation by sense-antisense overlap of polyadenylation signals. RNA. 2009;15(6):1154–63. doi: 10.1261/rna.1608909 19390116

55. Huang Y, Carmichael GG. RNA processing in the polyoma virus life cycle. Front Biosci (Landmark Ed). 2009;14:4968–77.

56. Johne R, Muller H, Rector A, van Ranst M, Stevens H. Rolling-circle amplification of viral DNA genomes using phi29 polymerase. Trends Microbiol. 2009;17(5):205–11. doi: 10.1016/j.tim.2009.02.004 19375325

57. Kamen R, Jat P, Treisman R, Favaloro J, Folk WR. 5' termini of polyoma virus early region transcripts synthesized in vivo by wild-type virus and viable deletion mutants. J Mol Biol. 1982;159(2):189–224. 6292432

58. Buchman AR, Fromm M, Berg P. Complex regulation of simian virus 40 early-region transcription from different overlapping promoters. Mol Cell Biol. 1984;4(9):1900–14. 6092946

59. Khalili K, Feigenbaum L, Khoury G. Evidence for a shift in 5'-termini of early viral RNA during the lytic cycle of JC virus. Virology. 1987;158(2):469–72. 3035794

60. Lanoix J, Tseng RW, Acheson NH. Production of polyomavirus late mRNAs requires sequences near the 5' end of the leader but does not require leader-to-leader splicing. J Virol. 1991;65(9):4728–34. 1651405

61. Song Gao J, Zhang Y, Li M, Tucker LD, Machan JT, Quesenberry P, et al. Atypical transcription of microRNA gene fragments. Nucleic Acids Res. 2010;38(9):2775–87. doi: 10.1093/nar/gkp1242 20097657

62. Woolford L, Rector A, Van Ranst M, Ducki A, Bennett MD, Nicholls PK, et al. A novel virus detected in papillomas and carcinomas of the endangered western barred bandicoot (Perameles bougainville) exhibits genomic features of both the Papillomaviridae and Polyomaviridae. J Virol. 2007;81(24):13280–90. 17898069

63. Bennett MD, Woolford L, Stevens H, Van Ranst M, Oldfield T, Slaven M, et al. Genomic characterization of a novel virus found in papillomatous lesions from a southern brown bandicoot (Isoodon obesulus) in Western Australia. Virology. 2008;376(1):173–82. doi: 10.1016/j.virol.2008.03.014 18440042

64. Chen CJ, Kincaid RP, Seo GJ, Bennett MD, Sullivan CS. Insights into Polyomaviridae microRNA function derived from study of the bandicoot papillomatosis carcinomatosis viruses. J Virol. 2011;85(9):4487–500. doi: 10.1128/JVI.02557-10 21345962

65. Leendertz FH, Scuda N, Cameron KN, Kidega T, Zuberbuhler K, Leendertz SA, et al. African great apes are naturally infected with polyomaviruses closely related to Merkel cell polyomavirus. J Virol. 2011;85(2):916–24. doi: 10.1128/JVI.01585-10 21047967

66. Houben R, Shuda M, Weinkam R, Schrama D, Feng H, Chang Y, et al. Merkel cell polyomavirus-infected Merkel cell carcinoma cells require expression of viral T antigens. J Virol. 2010;84(14):7064–72. doi: 10.1128/JVI.02400-09 20444890

67. Grundhoff A, Ganem D. Inefficient establishment of KSHV latency suggests an additional role for continued lytic replication in Kaposi sarcoma pathogenesis. J Clin Invest. 2004;113(1):124–36. 14702116

68. Leight ER, Sugden B. The cis-acting family of repeats can inhibit as well as stimulate establishment of an oriP replicon. J Virol. 2001;75(22):10709–20. 11602712

69. Leight ER, Sugden B. Establishment of an oriP replicon is dependent upon an infrequent, epigenetic event. Mol Cell Biol. 2001;21(13):4149–61. 11390644

70. Li LC. Chromatin remodeling by the small RNA machinery in mammalian cells. Epigenetics. 2014;9(1):45–52. doi: 10.4161/epi.26830 24149777

71. Kim DH, Rossi JJ. Transcriptional gene silencing using small RNAs. Methods Mol Biol. 2009;555:119–25. doi: 10.1007/978-1-60327-295-7_9 19495692

72. Kim DH, Villeneuve LM, Morris KV, Rossi JJ. Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells. Nat Struct Mol Biol. 2006;13(9):793–7. 16936726

73. Kim DH, Saetrom P, Snove O Jr., Rossi JJ. MicroRNA-directed transcriptional gene silencing in mammalian cells. Proc Natl Acad Sci U S A. 2008;105(42):16230–5. doi: 10.1073/pnas.0808830105 18852463

74. Cheng J, Rozenblatt-Rosen O, Paulson KG, Nghiem P, DeCaprio JA. Merkel cell polyomavirus large T antigen has growth-promoting and inhibitory activities. J Virol. 2013;87(11):6118–26. doi: 10.1128/JVI.00385-13 23514892

75. Cullen BR. Herpesvirus microRNAs: phenotypes and functions. Curr Opin Virol. 2011;1(3):211–5. doi: 10.1016/j.coviro.2011.04.003 21927637

76. Ramalingam D, Kieffer-Kwon P, Ziegelbauer JM. Emerging themes from EBV and KSHV microRNA targets. Viruses. 2012;4(9):1687–710. doi: 10.3390/v4091687 23170179

77. Zhu Y, Haecker I, Yang Y, Gao SJ, Renne R. gamma-Herpesvirus-encoded miRNAs and their roles in viral biology and pathogenesis. Curr Opin Virol. 2013;3(3):266–75. doi: 10.1016/j.coviro.2013.05.013 23743127

78. Wang X, Helfer CM, Pancholi N, Bradner JE, You J. Recruitment of Brd4 to the human papillomavirus type 16 DNA replication complex is essential for replication of viral DNA. J Virol. 2013;87(7):3871–84. doi: 10.1128/JVI.03068-12 23365439

79. McPhillips MG, Oliveira JG, Spindler JE, Mitra R, McBride AA. Brd4 is required for e2-mediated transcriptional activation but not genome partitioning of all papillomaviruses. J Virol. 2006;80(19):9530–43. 16973557

80. McPhillips MG, Ozato K, McBride AA. Interaction of bovine papillomavirus E2 protein with Brd4 stabilizes its association with chromatin. J Virol. 2005;79(14):8920–32. 15994786

81. Wu SY, Lee AY, Hou SY, Kemper JK, Erdjument-Bromage H, Tempst P, et al. Brd4 links chromatin targeting to HPV transcriptional silencing. Genes Dev. 2006;20(17):2383–96. 16921027

82. Baxter MK, McPhillips MG, Ozato K, McBride AA. The mitotic chromosome binding activity of the papillomavirus E2 protein correlates with interaction with the cellular chromosomal protein, Brd4. J Virol. 2005;79(8):4806–18. 15795266

83. You J, Croyle JL, Nishimura A, Ozato K, Howley PM. Interaction of the bovine papillomavirus E2 protein with Brd4 tethers the viral DNA to host mitotic chromosomes. Cell. 2004;117(3):349–60. 15109495

84. Jang MK, Shen K, McBride AA. Papillomavirus genomes associate with BRD4 to replicate at fragile sites in the host genome. PLoS Pathog. 2014;10(5):e1004117. doi: 10.1371/journal.ppat.1004117 24832099

85. Rosen ST, Gould VE, Salwen HR, Herst CV, Le Beau MM, Lee I, et al. Establishment and characterization of a neuroendocrine skin carcinoma cell line. Lab Invest. 1987;56(3):302–12. 3546933

86. Graham FL, Smiley J, Russell WC, Nairn R. Characteristics of a human cell line transformed by DNA from human adenovirus type 5. J Gen Virol. 1977;36(1):59–74. 886304

87. Grundhoff A, Ganem D. The latency-associated nuclear antigen of Kaposi's sarcoma-associated herpesvirus permits replication of terminal repeat-containing plasmids. J Virol. 2003;77(4):2779–83. 12552022

88. Rector A, Tachezy R, Van Ranst M. A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification. J Virol. 2004;78(10):4993–8. 15113879

89. Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 2011;29(7):644–52. doi: 10.1038/nbt.1883 21572440

90. Varkonyi-Gasic E, Hellens RP. Quantitative stem-loop RT-PCR for detection of microRNAs. Methods Mol Biol. 2011;744:145–57. doi: 10.1007/978-1-61779-123-9_10 21533691

91. Si H, Verma SC, Robertson ES. Proteomic analysis of the Kaposi's sarcoma-associated herpesvirus terminal repeat element binding proteins. J Virol. 2006;80(18):9017–30. 16940514

92. Gunther T, Grundhoff A. The epigenetic landscape of latent Kaposi sarcoma-associated herpesvirus genomes. PLoS Pathog. 2010;6(6):e1000935. doi: 10.1371/journal.ppat.1000935 20532208

93. Scotto-Lavino E, Du G, Frohman MA. 3' end cDNA amplification using classic RACE. Nat Protoc. 2006;1(6):2742–5. 17406530

94. Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 2013;14(4):R36. doi: 10.1186/gb-2013-14-4-r36 23618408

95. Griffiths-Jones S. The microRNA Registry. Nucleic Acids Res. 2004;32(Database issue):D109–11. 14681370

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