-
Články
- Časopisy
- Kurzy
- Témy
- Kongresy
- Videa
- Podcasty
Variation of Contributes to Dog Breed Skull Diversity
Since the beginnings of domestication, the craniofacial architecture of the domestic dog has morphed and radiated to human whims. By beginning to define the genetic underpinnings of breed skull shapes, we can elucidate mechanisms of morphological diversification while presenting a framework for understanding human cephalic disorders. Using intrabreed association mapping with museum specimen measurements, we show that skull shape is regulated by at least five quantitative trait loci (QTLs). Our detailed analysis using whole-genome sequencing uncovers a missense mutation in BMP3. Validation studies in zebrafish show that Bmp3 function in cranial development is ancient. Our study reveals the causal variant for a canine QTL contributing to a major morphologic trait.
Vyšlo v časopise: Variation of Contributes to Dog Breed Skull Diversity. PLoS Genet 8(8): e32767. doi:10.1371/journal.pgen.1002849
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002849Souhrn
Since the beginnings of domestication, the craniofacial architecture of the domestic dog has morphed and radiated to human whims. By beginning to define the genetic underpinnings of breed skull shapes, we can elucidate mechanisms of morphological diversification while presenting a framework for understanding human cephalic disorders. Using intrabreed association mapping with museum specimen measurements, we show that skull shape is regulated by at least five quantitative trait loci (QTLs). Our detailed analysis using whole-genome sequencing uncovers a missense mutation in BMP3. Validation studies in zebrafish show that Bmp3 function in cranial development is ancient. Our study reveals the causal variant for a canine QTL contributing to a major morphologic trait.
Zdroje
1. SablinMVKhlopachevGA 2002 The Earliest Ice Age Dogs: Evidence from Eliseevichi 1. Current Anthropology 43 795 799
2. GermonpréMSablinMVStevensREHedgesREHofreiterM 2009 Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes. Journal of Archaeological Science 36 473 490
3. BoykoARQuignonPLiLSchoenebeckJJDegenhardtJD 2010 A simple genetic architecture underlies morphological variation in dogs. PLoS Biol 8 e1000451 doi:10.1371/journal.pbio.1000451
4. FondonJWGarnerHR 2004 Molecular origins of rapid and continuous morphological evolution. Proc Natl Acad Sci USA 101 18058 18063
5. StockardCRAndersonODJamesWT Wistar Institute of Anatomy and Biology 1941 The Genetic and Endocrinic Basis for Differences in Form and Behavior Philadelphia The Wistar Institute of Anatomy and Biology
6. HaworthKEIslamIBreenMPuttWMakrinouE 2001 Canine TCOF1; cloning, chromosome assignment and genetic analysis in dogs with different head types. Mammalian Genome 12 622 629
7. HunemeierTSalzanoFMBortoliniMC 2009 TCOF1 T/Servariant and brachycephaly in dogs. Animal Genetics 40 357 358
8. HaworthKBreenMBinnsMHopkinsonDAEdwardsYH 2001 The canine homeobox gene MSX2: sequence, chromosome assignment and genetic analysis in dogs of different breeds. Animal Genetics 32 32 36
9. BannaschDYoungAMyersJTruvéKDickinsonP 2010 Localization of canine brachycephaly using an across breed mapping approach. PLoS ONE 5 e9632 doi:10.1371/journal.pone.0009632
10. QuilezJShortADMartínezVKennedyLJOllierW 2011 A selective sweep of >8 Mb on chromosome 26 in the Boxer genome. BMC Genomics 12 339
11. KlingenbergCP 2011 MorphoJ: an integrated software package for geometric morphometrics. Molecular Ecology Resources 11 353 357
12. The Complete Dog Book 1998 The Complete Dog Book. 19th ed New York John Wiley & Sons
13. VaysseARatnakumarADerrienTAxelssonEPielbergGR 2011 Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping. PLoS Genet 7 e1002316 doi:10.1371/journal.pgen.1002316
14. JonesPChaseKMartinADavernPOstranderEA 2008 Single-nucleotide-polymorphism-based association mapping of dog stereotypes. Genetics 179 1033 1044
15. PurcellSNealeBTodd-BrownKThomasLFerreiraMAR 2007 PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81 559 575
16. SutterNBBustamanteCDChaseKGrayMMZhaoK 2007 A Single IGF1 Allele Is a Major Determinant of Small Size in Dogs. Science 316 112 115
17. ZhouXStephensM 2012 Genome-wide Efficient Mixed Model Analysis for Association Studies. Nature Genetics doi:10.1038/ng.2310
18. ParkerHGKukekovaAVAkeyDTGoldsteinOKirknessEF 2007 Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds. Genome Research 17 1562 1571
19. ParkerHG 2004 Genetic Structure of the Purebred Domestic Dog. Science 304 1160 1164
20. AkeyJMZhangGZhangKJinLShriverMD 2002 Interrogating a high-density SNP map for signatures of natural selection. Genome Research 12 1805 1814
21. PollingerJPBustamanteCDFledel-AlonASchmutzSGrayMM 2005 Selective sweep mapping of genes with large phenotypic effects. Genome Research 15 1809 1819
22. ChikudaHKugimiyaFHoshiKIkedaTOgasawaraT 2004 Cyclic GMP-dependent protein kinase II is a molecular switch from proliferation to hypertrophic differentiation of chondrocytes. Genes & Development 18 2418 2429
23. DaluiskiAEngstrandTBahamondeMEGamerLWAgiusE 2001 Bone morphogenetic protein-3 is a negative regulator of bone density. Nature Genetics 27 84 88
24. PfeiferAAszódiASeidlerURuthPHofmannF 1996 Intestinal secretory defects and dwarfism in mice lacking cGMP-dependent protein kinase II. Science 274 2082 2086
25. SunYZhangQ-JZhongJWangY-Q 2010 Characterization and expression of AmphiBMP3/3b gene in amphioxus Branchiostoma japonicum. Development, Growth & Differentiation 52 157 167
26. TakaoMHinoJTakeshitaNKonnoYNishizawaT 1996 Identification of rat bone morphogenetic protein-3b (BMP-3b), a new member of BMP-3. Biochem Biophys Res Commun 219 656 662
27. KettunenPNieXKvinnslandIHLuukkoK 2006 Histological development and dynamic expression of Bmp2-6 mRNAs in the embryonic and postnatal mouse cranial base. Anat Rec 288 1250 1258
28. AdzhubeiIASchmidtSPeshkinLRamenskyVEGerasimovaA 2010 A method and server for predicting damaging missense mutations. Nat Methods 7 248 249
29. AllendorphGPIsaacsMJKawakamiYIzpisua BelmonteJCChoeS 2007 BMP-3 and BMP-6 structures illuminate the nature of binding specificity with receptors. Biochemistry 2007 12238 12247
30. GamerLWNoveJLevinMRosenV 2005 BMP-3 is a novel inhibitor of both activin and BMP-4 signaling in Xenopus embryos. Developmental Biology 285 156 168
31. KokabuSGamerLCoxKLoweryJTsujiK 2011 BMP3 Suppresses Osteoblast Differentiation of Bone Marrow Stromal Cells via Interaction with Acvr2b. Mol Endocrinol 26 87 94
32. MuellerRLHuangCHoRK 2010 Spatio-temporal regulation of Wnt and retinoic acid signaling by tbx16/spadetail during zebrafish mesoderm differentiation. BMC Genomics 11 492 492
33. BonnetCAndrieuxJBeri-DexheimerMLeheupBBouteO 2010 Microdeletion at chromosome 4q21 defines a new emerging syndrome with marked growth restriction, mental retardation and absent or severely delayed speech. Journal of Medical Genetics 47 377 384
34. WileyDAmentaNAlcantaraDGhoshDKilYJ 2005 Evolutionary morphing. 431 438 Visualization, 2005 VIS 05 IEEE
35. ScheetPStephensM 2006 A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase. The American Journal of Human Genetics 78 629 644
36. IhakaRGentlemanR 1996 R: A Language for Data Analysis and Graphics. Journal of Computational and Graphical Statistics 5 299 314
37. LiHHandsakerBWysokerAFennellTRuanJ 2009 The Sequence Alignment/Map format and SAMtools. Bioinformatics 25 2078 2079
38. WickhamH 2009 ggplot2: Elegant Graphics for Data Analysis (Use R). 2nd ed Springer
39. WickhamH 2007 Reshaping data with the reshape package. J Stat Softw 21 1 20
40. SiepelABejeranoGPedersenJSHinrichsASHouM 2005 Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Research 15 1034 1050
41. WallNACraigEJLaboskyPAKesslerDS 2000 Mesendoderm induction and reversal of left-right pattern by mouse Gdf1, a Vg1-related gene. Developmental Biology 227 495 509
42. NikaidoMTadaMSajiTUenoN 1997 Conservation of BMP signaling in zebrafish mesoderm patterning. Mechanisms of Development 61 75 88
43. VillefrancJAAmigoJLawsonND 2007 Gateway compatible vectors for analysis of gene function in the zebrafish. Dev Dyn 236 3077 3087
44. KwanKMFujimotoEGrabherCMangumBDHardyME 2007 The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs. Dev Dyn 236 3088 3099
45. ThisseCThisseB 2008 High-resolution in situ hybridization to whole-mount zebrafish embryos. Nat Protoc 3 59 69
46. SchillingTFPiotrowskiTGrandelHBrandMHeisenbergCP 1996 Jaw and branchial arch mutants in zebrafish I: branchial arches. Development 123 329 344
47. NeuwirthE 2007 RColorBrewer: ColorBrewer palettes. R package version
48. TurnerSBushW 2010 Getting Genetics Done. gettinggeneticsdone.blogspot.com/
Štítky
Genetika Reprodukčná medicína
Článek Mutational Signatures of De-Differentiation in Functional Non-Coding Regions of Melanoma GenomesČlánek Rescuing Alu: Recovery of Inserts Shows LINE-1 Preserves Alu Activity through A-Tail ExpansionČlánek Genetics and Regulatory Impact of Alternative Polyadenylation in Human B-Lymphoblastoid CellsČlánek Retrovolution: HIV–Driven Evolution of Cellular Genes and Improvement of Anticancer Drug ActivationČlánek The Mi-2 Chromatin-Remodeling Factor Regulates Higher-Order Chromatin Structure and Cohesin DynamicsČlánek Identification of Human Proteins That Modify Misfolding and Proteotoxicity of Pathogenic Ataxin-1
Článok vyšiel v časopisePLOS Genetics
Najčítanejšie tento týždeň
2012 Číslo 8- Gynekologové a odborníci na reprodukční medicínu se sejdou na prvním virtuálním summitu
- Je „freeze-all“ pro všechny? Odborníci na fertilitu diskutovali na virtuálním summitu
-
Všetky články tohto čísla
- Mutational Signatures of De-Differentiation in Functional Non-Coding Regions of Melanoma Genomes
- Rescuing Alu: Recovery of Inserts Shows LINE-1 Preserves Alu Activity through A-Tail Expansion
- Genetics and Regulatory Impact of Alternative Polyadenylation in Human B-Lymphoblastoid Cells
- Chromosome Territories Meet a Condensin
- It's All in the Timing: Too Much E2F Is a Bad Thing
- Fine-Mapping and Initial Characterization of QT Interval Loci in African Americans
- Genome Patterns of Selection and Introgression of Haplotypes in Natural Populations of the House Mouse ()
- A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins
- Advances in Quantitative Trait Analysis in Yeast
- Experimental Evolution of a Novel Sexually Antagonistic Allele
- Variation of Contributes to Dog Breed Skull Diversity
- , a Gene Involved in Axonal Pathfinding, Is Mutated in Patients with Kallmann Syndrome
- A Single Origin for Nymphalid Butterfly Eyespots Followed by Widespread Loss of Associated Gene Expression
- Cryptocephal, the ATF4, Is a Specific Coactivator for Ecdysone Receptor Isoform B2
- Retrovolution: HIV–Driven Evolution of Cellular Genes and Improvement of Anticancer Drug Activation
- The PARN Deadenylase Targets a Discrete Set of mRNAs for Decay and Regulates Cell Motility in Mouse Myoblasts
- A Sexual Ornament in Chickens Is Affected by Pleiotropic Alleles at and , Selected during Domestication
- Use of Allele-Specific FAIRE to Determine Functional Regulatory Polymorphism Using Large-Scale Genotyping Arrays
- Novel Loci for Metabolic Networks and Multi-Tissue Expression Studies Reveal Genes for Atherosclerosis
- The Genetic Basis of Pollinator Adaptation in a Sexually Deceptive Orchid
- Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus to Lignocellulose Using RNA Sequencing
- Inheritance Beyond Plain Heritability: Variance-Controlling Genes in
- The Metabochip, a Custom Genotyping Array for Genetic Studies of Metabolic, Cardiovascular, and Anthropometric Traits
- Reprogramming to Pluripotency Can Conceal Somatic Cell Chromosomal Instability
- Condensin II Promotes the Formation of Chromosome Territories by Inducing Axial Compaction of Polyploid Interphase Chromosomes
- PTEN Negatively Regulates MAPK Signaling during Vulval Development
- A Dynamic Response Regulator Protein Modulates G-Protein–Dependent Polarity in the Bacterium
- Population Genomics of the Facultatively Mutualistic Bacteria and
- Components of a Fanconi-Like Pathway Control Pso2-Independent DNA Interstrand Crosslink Repair in Yeast
- Polysome Profiling in Liver Identifies Dynamic Regulation of Endoplasmic Reticulum Translatome by Obesity and Fasting
- Stromal Liver Kinase B1 [STK11] Signaling Loss Induces Oviductal Adenomas and Endometrial Cancer by Activating Mammalian Target of Rapamycin Complex 1
- Reprogramming of H3K27me3 Is Critical for Acquisition of Pluripotency from Cultured Tissues
- Transgene Induced Co-Suppression during Vegetative Growth in
- Hox and Sex-Determination Genes Control Segment Elimination through EGFR and Activity
- A Quantitative Comparison of the Similarity between Genes and Geography in Worldwide Human Populations
- Minibrain/Dyrk1a Regulates Food Intake through the Sir2-FOXO-sNPF/NPY Pathway in and Mammals
- Comparative Analysis of Regulatory Elements between and by Genome-Wide Transcription Start Site Profiling
- Simple Methods for Generating and Detecting Locus-Specific Mutations Induced with TALENs in the Zebrafish Genome
- S Phase–Coupled E2f1 Destruction Ensures Homeostasis in Proliferating Tissues
- Cell-Nonautonomous Signaling of FOXO/DAF-16 to the Stem Cells of
- The Mi-2 Chromatin-Remodeling Factor Regulates Higher-Order Chromatin Structure and Cohesin Dynamics
- Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus
- Role of Mex67-Mtr2 in the Nuclear Export of 40S Pre-Ribosomes
- Genetic Modulation of Lipid Profiles following Lifestyle Modification or Metformin Treatment: The Diabetes Prevention Program
- HAL-2 Promotes Homologous Pairing during Meiosis by Antagonizing Inhibitory Effects of Synaptonemal Complex Precursors
- SLX-1 Is Required for Maintaining Genomic Integrity and Promoting Meiotic Noncrossovers in the Germline
- Phylogenetic and Transcriptomic Analysis of Chemosensory Receptors in a Pair of Divergent Ant Species Reveals Sex-Specific Signatures of Odor Coding
- Reduced Prostasin (CAP1/PRSS8) Activity Eliminates HAI-1 and HAI-2 Deficiency–Associated Developmental Defects by Preventing Matriptase Activation
- Dissecting the Gene Network of Dietary Restriction to Identify Evolutionarily Conserved Pathways and New Functional Genes
- Identification of Human Proteins That Modify Misfolding and Proteotoxicity of Pathogenic Ataxin-1
- and Link Transcription of Phospholipid Biosynthetic Genes to ER Stress and the UPR
- CDK9 and H2B Monoubiquitination: A Well-Choreographed Dance
- Rare Copy Number Variations in Adults with Tetralogy of Fallot Implicate Novel Risk Gene Pathways
- Ccdc94 Protects Cells from Ionizing Radiation by Inhibiting the Expression of
- NOL11, Implicated in the Pathogenesis of North American Indian Childhood Cirrhosis, Is Required for Pre-rRNA Transcription and Processing
- Human Developmental Enhancers Conserved between Deuterostomes and Protostomes
- A Luminal Glycoprotein Drives Dose-Dependent Diameter Expansion of the Hindgut Tube
- Melanophore Migration and Survival during Zebrafish Adult Pigment Stripe Development Require the Immunoglobulin Superfamily Adhesion Molecule Igsf11
- Dynamic Distribution of Linker Histone H1.5 in Cellular Differentiation
- Combining Comparative Proteomics and Molecular Genetics Uncovers Regulators of Synaptic and Axonal Stability and Degeneration
- Chemical Genetics Reveals a Specific Requirement for Cdk2 Activity in the DNA Damage Response and Identifies Nbs1 as a Cdk2 Substrate in Human Cells
- Experimental Relocation of the Mitochondrial Gene to the Nucleus Reveals Forces Underlying Mitochondrial Genome Evolution
- Rates of Gyrase Supercoiling and Transcription Elongation Control Supercoil Density in a Bacterial Chromosome
- Mutations in a P-Type ATPase Gene Cause Axonal Degeneration
- A General G1/S-Phase Cell-Cycle Control Module in the Flowering Plant
- Multiple Roles and Interactions of and in Development of the Respiratory System
- UNC-40/DCC, SAX-3/Robo, and VAB-1/Eph Polarize F-Actin during Embryonic Morphogenesis by Regulating the WAVE/SCAR Actin Nucleation Complex
- Epigenetic Remodeling of Meiotic Crossover Frequency in DNA Methyltransferase Mutants
- Modulating the Strength and Threshold of NOTCH Oncogenic Signals by
- Loss of Axonal Mitochondria Promotes Tau-Mediated Neurodegeneration and Alzheimer's Disease–Related Tau Phosphorylation Via PAR-1
- Acetyl-CoA-Carboxylase Sustains a Fatty Acid–Dependent Remote Signal to Waterproof the Respiratory System
- ATXN2-CAG42 Sequesters PABPC1 into Insolubility and Induces FBXW8 in Cerebellum of Old Ataxic Knock-In Mice
- Cohesin Rings Devoid of Scc3 and Pds5 Maintain Their Stable Association with the DNA
- The MicroRNA Inhibits Calcium Signaling by Targeting the TIR-1/Sarm1 Adaptor Protein to Control Stochastic L/R Neuronal Asymmetry in
- Rapid-Throughput Skeletal Phenotyping of 100 Knockout Mice Identifies 9 New Genes That Determine Bone Strength
- The Genes Define Unique Classes of Two-Partner Secretion and Contact Dependent Growth Inhibition Systems
- PLOS Genetics
- Archív čísel
- Aktuálne číslo
- Informácie o časopise
Najčítanejšie v tomto čísle- Dissecting the Gene Network of Dietary Restriction to Identify Evolutionarily Conserved Pathways and New Functional Genes
- It's All in the Timing: Too Much E2F Is a Bad Thing
- Variation of Contributes to Dog Breed Skull Diversity
- The PARN Deadenylase Targets a Discrete Set of mRNAs for Decay and Regulates Cell Motility in Mouse Myoblasts
Prihlásenie#ADS_BOTTOM_SCRIPTS#Zabudnuté hesloZadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.
- Časopisy