#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Variation of Contributes to Dog Breed Skull Diversity


Since the beginnings of domestication, the craniofacial architecture of the domestic dog has morphed and radiated to human whims. By beginning to define the genetic underpinnings of breed skull shapes, we can elucidate mechanisms of morphological diversification while presenting a framework for understanding human cephalic disorders. Using intrabreed association mapping with museum specimen measurements, we show that skull shape is regulated by at least five quantitative trait loci (QTLs). Our detailed analysis using whole-genome sequencing uncovers a missense mutation in BMP3. Validation studies in zebrafish show that Bmp3 function in cranial development is ancient. Our study reveals the causal variant for a canine QTL contributing to a major morphologic trait.


Vyšlo v časopise: Variation of Contributes to Dog Breed Skull Diversity. PLoS Genet 8(8): e32767. doi:10.1371/journal.pgen.1002849
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002849

Souhrn

Since the beginnings of domestication, the craniofacial architecture of the domestic dog has morphed and radiated to human whims. By beginning to define the genetic underpinnings of breed skull shapes, we can elucidate mechanisms of morphological diversification while presenting a framework for understanding human cephalic disorders. Using intrabreed association mapping with museum specimen measurements, we show that skull shape is regulated by at least five quantitative trait loci (QTLs). Our detailed analysis using whole-genome sequencing uncovers a missense mutation in BMP3. Validation studies in zebrafish show that Bmp3 function in cranial development is ancient. Our study reveals the causal variant for a canine QTL contributing to a major morphologic trait.


Zdroje

1. SablinMVKhlopachevGA 2002 The Earliest Ice Age Dogs: Evidence from Eliseevichi 1. Current Anthropology 43 795 799

2. GermonpréMSablinMVStevensREHedgesREHofreiterM 2009 Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes. Journal of Archaeological Science 36 473 490

3. BoykoARQuignonPLiLSchoenebeckJJDegenhardtJD 2010 A simple genetic architecture underlies morphological variation in dogs. PLoS Biol 8 e1000451 doi:10.1371/journal.pbio.1000451

4. FondonJWGarnerHR 2004 Molecular origins of rapid and continuous morphological evolution. Proc Natl Acad Sci USA 101 18058 18063

5. StockardCRAndersonODJamesWT Wistar Institute of Anatomy and Biology 1941 The Genetic and Endocrinic Basis for Differences in Form and Behavior Philadelphia The Wistar Institute of Anatomy and Biology

6. HaworthKEIslamIBreenMPuttWMakrinouE 2001 Canine TCOF1; cloning, chromosome assignment and genetic analysis in dogs with different head types. Mammalian Genome 12 622 629

7. HunemeierTSalzanoFMBortoliniMC 2009 TCOF1 T/Servariant and brachycephaly in dogs. Animal Genetics 40 357 358

8. HaworthKBreenMBinnsMHopkinsonDAEdwardsYH 2001 The canine homeobox gene MSX2: sequence, chromosome assignment and genetic analysis in dogs of different breeds. Animal Genetics 32 32 36

9. BannaschDYoungAMyersJTruvéKDickinsonP 2010 Localization of canine brachycephaly using an across breed mapping approach. PLoS ONE 5 e9632 doi:10.1371/journal.pone.0009632

10. QuilezJShortADMartínezVKennedyLJOllierW 2011 A selective sweep of >8 Mb on chromosome 26 in the Boxer genome. BMC Genomics 12 339

11. KlingenbergCP 2011 MorphoJ: an integrated software package for geometric morphometrics. Molecular Ecology Resources 11 353 357

12. The Complete Dog Book 1998 The Complete Dog Book. 19th ed New York John Wiley & Sons

13. VaysseARatnakumarADerrienTAxelssonEPielbergGR 2011 Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping. PLoS Genet 7 e1002316 doi:10.1371/journal.pgen.1002316

14. JonesPChaseKMartinADavernPOstranderEA 2008 Single-nucleotide-polymorphism-based association mapping of dog stereotypes. Genetics 179 1033 1044

15. PurcellSNealeBTodd-BrownKThomasLFerreiraMAR 2007 PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81 559 575

16. SutterNBBustamanteCDChaseKGrayMMZhaoK 2007 A Single IGF1 Allele Is a Major Determinant of Small Size in Dogs. Science 316 112 115

17. ZhouXStephensM 2012 Genome-wide Efficient Mixed Model Analysis for Association Studies. Nature Genetics doi:10.1038/ng.2310

18. ParkerHGKukekovaAVAkeyDTGoldsteinOKirknessEF 2007 Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds. Genome Research 17 1562 1571

19. ParkerHG 2004 Genetic Structure of the Purebred Domestic Dog. Science 304 1160 1164

20. AkeyJMZhangGZhangKJinLShriverMD 2002 Interrogating a high-density SNP map for signatures of natural selection. Genome Research 12 1805 1814

21. PollingerJPBustamanteCDFledel-AlonASchmutzSGrayMM 2005 Selective sweep mapping of genes with large phenotypic effects. Genome Research 15 1809 1819

22. ChikudaHKugimiyaFHoshiKIkedaTOgasawaraT 2004 Cyclic GMP-dependent protein kinase II is a molecular switch from proliferation to hypertrophic differentiation of chondrocytes. Genes & Development 18 2418 2429

23. DaluiskiAEngstrandTBahamondeMEGamerLWAgiusE 2001 Bone morphogenetic protein-3 is a negative regulator of bone density. Nature Genetics 27 84 88

24. PfeiferAAszódiASeidlerURuthPHofmannF 1996 Intestinal secretory defects and dwarfism in mice lacking cGMP-dependent protein kinase II. Science 274 2082 2086

25. SunYZhangQ-JZhongJWangY-Q 2010 Characterization and expression of AmphiBMP3/3b gene in amphioxus Branchiostoma japonicum. Development, Growth & Differentiation 52 157 167

26. TakaoMHinoJTakeshitaNKonnoYNishizawaT 1996 Identification of rat bone morphogenetic protein-3b (BMP-3b), a new member of BMP-3. Biochem Biophys Res Commun 219 656 662

27. KettunenPNieXKvinnslandIHLuukkoK 2006 Histological development and dynamic expression of Bmp2-6 mRNAs in the embryonic and postnatal mouse cranial base. Anat Rec 288 1250 1258

28. AdzhubeiIASchmidtSPeshkinLRamenskyVEGerasimovaA 2010 A method and server for predicting damaging missense mutations. Nat Methods 7 248 249

29. AllendorphGPIsaacsMJKawakamiYIzpisua BelmonteJCChoeS 2007 BMP-3 and BMP-6 structures illuminate the nature of binding specificity with receptors. Biochemistry 2007 12238 12247

30. GamerLWNoveJLevinMRosenV 2005 BMP-3 is a novel inhibitor of both activin and BMP-4 signaling in Xenopus embryos. Developmental Biology 285 156 168

31. KokabuSGamerLCoxKLoweryJTsujiK 2011 BMP3 Suppresses Osteoblast Differentiation of Bone Marrow Stromal Cells via Interaction with Acvr2b. Mol Endocrinol 26 87 94

32. MuellerRLHuangCHoRK 2010 Spatio-temporal regulation of Wnt and retinoic acid signaling by tbx16/spadetail during zebrafish mesoderm differentiation. BMC Genomics 11 492 492

33. BonnetCAndrieuxJBeri-DexheimerMLeheupBBouteO 2010 Microdeletion at chromosome 4q21 defines a new emerging syndrome with marked growth restriction, mental retardation and absent or severely delayed speech. Journal of Medical Genetics 47 377 384

34. WileyDAmentaNAlcantaraDGhoshDKilYJ 2005 Evolutionary morphing. 431 438 Visualization, 2005 VIS 05 IEEE

35. ScheetPStephensM 2006 A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase. The American Journal of Human Genetics 78 629 644

36. IhakaRGentlemanR 1996 R: A Language for Data Analysis and Graphics. Journal of Computational and Graphical Statistics 5 299 314

37. LiHHandsakerBWysokerAFennellTRuanJ 2009 The Sequence Alignment/Map format and SAMtools. Bioinformatics 25 2078 2079

38. WickhamH 2009 ggplot2: Elegant Graphics for Data Analysis (Use R). 2nd ed Springer

39. WickhamH 2007 Reshaping data with the reshape package. J Stat Softw 21 1 20

40. SiepelABejeranoGPedersenJSHinrichsASHouM 2005 Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Research 15 1034 1050

41. WallNACraigEJLaboskyPAKesslerDS 2000 Mesendoderm induction and reversal of left-right pattern by mouse Gdf1, a Vg1-related gene. Developmental Biology 227 495 509

42. NikaidoMTadaMSajiTUenoN 1997 Conservation of BMP signaling in zebrafish mesoderm patterning. Mechanisms of Development 61 75 88

43. VillefrancJAAmigoJLawsonND 2007 Gateway compatible vectors for analysis of gene function in the zebrafish. Dev Dyn 236 3077 3087

44. KwanKMFujimotoEGrabherCMangumBDHardyME 2007 The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs. Dev Dyn 236 3088 3099

45. ThisseCThisseB 2008 High-resolution in situ hybridization to whole-mount zebrafish embryos. Nat Protoc 3 59 69

46. SchillingTFPiotrowskiTGrandelHBrandMHeisenbergCP 1996 Jaw and branchial arch mutants in zebrafish I: branchial arches. Development 123 329 344

47. NeuwirthE 2007 RColorBrewer: ColorBrewer palettes. R package version

48. TurnerSBushW 2010 Getting Genetics Done. gettinggeneticsdone.blogspot.com/

Štítky
Genetika Reprodukčná medicína

Článok vyšiel v časopise

PLOS Genetics


2012 Číslo 8
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Získaná hemofilie - Povědomí o nemoci a její diagnostika
nový kurz

Eozinofilní granulomatóza s polyangiitidou
Autori: doc. MUDr. Martina Doubková, Ph.D.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#