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A Sexual Ornament in Chickens Is Affected by Pleiotropic Alleles at and , Selected during Domestication


Domestication is one of the strongest forms of short-term, directional selection. Although selection is typically only exerted on one or a few target traits, domestication can lead to numerous changes in many seemingly unrelated phenotypes. It is unknown whether such correlated responses are due to pleiotropy or linkage between separate genetic architectures. Using three separate intercrosses between wild and domestic chickens, a locus affecting comb mass (a sexual ornament in the chicken) and several fitness traits (primarily medullary bone allocation and fecundity) was identified. This locus contains two tightly-linked genes, BMP2 and HAO1, which together produce the range of pleiotropic effects seen. This study demonstrates the importance of pleiotropy (or extremely close linkage) in domestication. The nature of this pleiotropy also provides insights into how this sexual ornament could be maintained in wild populations.


Vyšlo v časopise: A Sexual Ornament in Chickens Is Affected by Pleiotropic Alleles at and , Selected during Domestication. PLoS Genet 8(8): e32767. doi:10.1371/journal.pgen.1002914
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002914

Souhrn

Domestication is one of the strongest forms of short-term, directional selection. Although selection is typically only exerted on one or a few target traits, domestication can lead to numerous changes in many seemingly unrelated phenotypes. It is unknown whether such correlated responses are due to pleiotropy or linkage between separate genetic architectures. Using three separate intercrosses between wild and domestic chickens, a locus affecting comb mass (a sexual ornament in the chicken) and several fitness traits (primarily medullary bone allocation and fecundity) was identified. This locus contains two tightly-linked genes, BMP2 and HAO1, which together produce the range of pleiotropic effects seen. This study demonstrates the importance of pleiotropy (or extremely close linkage) in domestication. The nature of this pleiotropy also provides insights into how this sexual ornament could be maintained in wild populations.


Zdroje

1. Darwin C (1868) The Variation of Animals and Plants under Domestication. London: John Murray.

2. AnderssonL, GeorgesM (2004) Domestic anmial genomics: deciphering the genetics of complex traits. Nature Reviews Genetics 5: 202–212.

3. JensenP, AnderssonL (2005) Genomics Meets Ethology: A New Route to Understanding Domestication, Behavior, and Sustainability in Animal Breeding. AMBIO: A Journal of the Human Environment 34: 320–324.

4. Price EO (2002) Animal domestication and behaviour. Wallingford: CABI Publishing. 297 p.

5. BelyaevDK (1979) Destabilizing selection as a factor of domestication. Journal of Heredity 70: 301–308.

6. BelyaevDK, RuvinskyAO, TrutLN (1981) Inherited activation-inactivation of the star gene in foxes: its bearing on the problem of domestication. Journal of Heredity 72: 267–274.

7. AlbertFW, CarlborgO, PlyusninaIZ, BesnierF, HedwigD, et al. (2009) Genetic Architecture of Tameness in a Rat Model of Animal Domestication. Genetics genetics.109.102186.

8. WrightD, KerjeS, BrändströmH, SchützK, KindmarkA, et al. (2008) The genetic architecture of a female sexual ornament. Evolution 62: 86–98.

9. Consortium ICGS (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695–716.

10. GroenenMAM, WahlbergP, FoglioM, ChengHH, MegensH-J, et al. (2009) A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Research 19: 510–519.

11. PizzariT, BirkheadTR (2000) Female feral fowl eject sperm of subordinate males. Nature 405: 787.

12. PizzariT, CornwallisCK, LovlieH, JakobssonS, BirkheadTR (2003) Sophisticated sperm allocation in male fowl. Nature 426: 70–73.

13. ParkerT, LigonJ (2003) Female mating preferences in red junglefowl: a meta-analysis. Ethology Ecology and Evolution 15: 63–72.

14. ZukM, ThornhillR, LigonJD, JohnsonK, AustadS, et al. (1990) The role of male ornaments and courtship behaviour in female mate choice of red junglefowl. American Naturalist 136: 459–473.

15. CornwallisCK, BirkheadTR (2007) Experimental evidence that female ornamentation increases the acquisition of sperm and signals fecundity. Proceedings of the Royal Society B: Biological Sciences 274: 583–590.

16. CransbergPH, ParkinsonGB, WilsonS, ThorpBH (2001) Sequential studies of skeletal calcium reserves and structural bone volumes in a commercial layer flock. Br Poultry Sci 260–265.

17. AmundsenT (2000) Why are female birds ornamented? Trends in Ecology and Evolution 15: 149–155.

18. RubinC-J, ZodyMC, ErikssonJ, MeadowsJRS, SherwoodE, et al. (2010) Whole-genome resequencing reveals loci under selection during chicken domestication. Nature 464: 587–591.

19. Van LaereAS, NguyenM, BraunschweigM, NezerC, ColletteC, et al. (2003) A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in pigs. Nature 425: 832–836.

20. PritchardJK, Di RienzoA (2010) Adaptation - not by sweeps alone. Nat Rev Genet 11: 665–667.

21. Le Bihan-DuvalE, NadafJ, BerriCc, PitelFdr, GrauletBÆ, et al. (2011) Detection of a Cis eQTL Controlling BMCO1 Gene Expression Leads to the Identification of a QTG for Chicken Breast Meat Color. PLoS ONE 6: e14825 doi:10.1371/journal.pone.0014825.

22. LeducMS, HagemanRS, VerdugoRA, TsaihS-W, WalshK, et al. (2011) Integration of QTL and bioinformatic tools to identify candidate genes for triglycerides in mice. Journal of Lipid Research 52: 1672–1682.

23. SchadtEE, LambJ, YangX, ZhuJ, EdwardsS, et al. (2005) An integrative genomics approach to infer causal associations between gene expression and disease. Nat Genet 37: 710–717.

24. LinkhartTA, MohanS, BaylinkDJ (1996) Growth factors for bone growth and repair: IGF, TGF[beta] and BMP. Bone 19: S1–S12.

25. de CrombruggheB, LefebvreV, NakashimaK (2001) Regulatory mechanisms in the pathways of cartilage and bone formation. Current Opinion in Cell Biology 13: 721–728.

26. RecalcatiS, TacchiniL, AlberghiniA, ConteD, CairoG (2003) Oxidative stress-mediated down-regulation of rat hydroxyacid oxidase 1, a liver-specific peroxisomal enzyme. Hepatology 38: 1159–1166.

27. HanS, LeeK-M, ParkSK, LeeJE, AhnHS, et al. (2010) Genome-wide association study of childhood acute lymphoblastic leukemia in Korea. Leukemia Research 34: 1271–1274.

28. WandersRJA, WaterhamHR (2006) Biochemistry of Mammalian Peroxisomes Revisited. Annual Review of Biochemistry 75: 295–332.

29. BehnamJT, WilliamsEL, BrinkS, RumsbyG, DanpureCJ (2006) Reconstruction of human hepatocyte glyoxylate metabolic pathways in stably transformed Chinese-hamster ovary cells. Biochem J 394: 409–416.

30. van KampenM (1971) Some aspects of thermoregulation in the white leghorn fowl. International Journal of Biometeorology 15: 244–246.

31. KoinangeEMK, SinghSP, GeptsP (1996) Genetic control of the domestication syndrome in common bean. Crop Science 36: 1282–1291.

32. Pérez-VegaE, PañedaA, Rodríguez-SuárezC, CampaA, GiraldezR, et al. (2010) Mapping of QTLs for morpho-agronomic and seed quality traits in a RIL population of common bean (Phaseolus vulgaris L.). TAG Theoretical and Applied Genetics 2010 online first.

33. WrightD, RubinCJ, Martinez BarrioA, SchützK, KerjeS, et al. (2010) The genetic architecture of domestication in the chicken: effects of pleiotropy and linkage. Molecular Ecology 19: 5140–5156.

34. BurkeJM, TangS, KnappSJ, RiesebergLH (2002) Genetic Analysis of Sunflower Domestication. Genetics 161: 1257–1267.

35. CaiHW, MorishimaH (2002) QTL clusters reflect character associations in wild and cultivated rice. TAG Theoretical and Applied Genetics 104: 1217–1228.

36. Andersson M (1994) Sexual Selection: Princeton University Press.

37. ChenowethS, McGuiganK (2010) The genetic basis of sexually selected variation. Annual Review of Ecology, Evolution, and Systematics 41: 81–101.

38. LandeR (1979) Quantitative genetic analysis of multivariate evolution, applied to brain-body size allometry. Evolution 33: 402–416.

39. WalshB, BlowsM (2009) Abundant genetic variation+strong selection = multivariate genetic constraints: a geometric view of adaptation. Annual Reviews in Ecology and Evolution Systems 40: 41–59.

40. RoweL, HouleD (1996) The Lek Paradox and the Capture of Genetic Variance by Condition Dependent Traits. Proceedings of the Royal Society of London Series B: Biological Sciences 263: 1415–1421.

41. FoleyB, ChenowethS, NuzhdinS, BlowsM (2007) Natural genetic variation in cuticular hydrocarbon expression in male and female Drosophila melanogaster. Genetics 175: 1465–1477.

42. EtgesWJ, De OliveiraCC, GraggE, Ortíz-BarrientosD, NoorMAF, et al. (2007) Evolution 61: 1106–1119.

43. EtgesWJ, De OliveiraCC, RitchieMG, NoorMAF (2009) Genetics of Incipient Speciation in Drosophilia mojavensis: II. Host Plants and Mating Status Influence Cuticular Hydro-Carbon QTL Expression and GxE Interactions. Evolution 63: 1712–1730.

44. KokkoH, JennionsMD, BrooksR (2006) Unifying and Testing Models of Sexual Selection. Annual Review of Ecology, Evolution, and Systematics 37: 43–66.

45. RanzJM, Castillo-DavisCI, MeiklejohnCD, HartlDL (2003) Sex-Dependent Gene Expression and Evolution of the Drosophila Transcriptome. Science 300: 1742–1745.

46. LaiZ, KaneNC, ZouY, RiesebergLH (2008) Natural Variation in Gene Expression Between Wild and Weedy Populations of Helianthus annuus. Genetics 179: 1881–1890.

47. RubinC-J, LindbergJ, FitzsimmonsC, SavolainenP, JensenP, et al. (2007) Differential gene expression in femoral bone from red junglefowl and domestic chicken, differing for bone phenotypic traits. BMC Genomics 8: 208.

48. NattD, RubinC-J, WrightD, JohnssonM, BeltekyJ, et al. (2012) Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens. BMC Genomics 13: 59.

49. LitvinO, CaustonHC, ChenB-J, Pe'erD (2009) Modularity and interactions in the genetics of gene expression. Proceedings of the National Academy of Sciences 106: 6441–6446.

50. CheslerEJ, LuL, ShouS, QuY, GuJ, et al. (2005) Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function. Nat Genet 37: 233–242.

51. McGrawEA, YeYH, FoleyB, ChenowethSF, HiggieM, et al. (2011) High-Dimensional Variance Partitioning Reveals the Modular Genetic Basis of Adaptive Divergence in Gene Expression during Reproductive Character Displacement. Evolution 65: 3126–3137.

52. AyrolesJF, CarboneMA, StoneEA, JordanKW, LymanRF, et al. (2009) Systems genetics of complex traits in Drosophila melanogaster. Nat Genet 41: 299–307.

53. RubinC-J, BrändströmH, WrightD, KerjeS, GunnarssonU, et al. (2007) Quantitative trait loci for BMD and bone strength in an intercross between domestic and wildtype chickens. Journal of Bone and Mineral Research 22: 375–384.

54. Green P, Falls K, Crooks S (1990) Cri-Map. 2.4 ed. St Louis: Washington University School of Medicine.

55. Perez-EncisoM, MisztalI (2004) Qxpak: a versatile mixed model application for genetical genomics and QTL analyses. Bioinformatics 20: 2792–2798.

56. BromanKW, WuH, SenS, ChurchillGA (2003) R/qtl: QTL maping in experimental crosses. Bioinformatics 19: 889–890.

57. ChurchillGA, DoergeRW (1994) Empirical Threshold values for Quantitative Trait Mapping. Genetics 138: 964–971.

58. DoergeRW, ChurchillGA (1996) Permutation Tests for Multiple Loci Affecting a Quantitative Character. Genetics 142: 285–294.

59. LanderES, KruglyakL (1995) Genetic Dissection of Complex Traits: Guidelines for Interpreting and Reporting Linkage Results. Nature Genetics 11: 241–247.

60. ManichaikulA, DupuisJ, SenS, BromanKW (2006) Poor Performance of Bootstrap Confidence Intervals for the Location of a Quantitative Trait Locus. Genetics 174: 481–489.

61. PeirceJL, BromanKW, LuL, CheslerEJ, ZhouG, et al. (2008) Genome Reshuffling for Advanced Intercross Permutation (GRAIP): Simulation and Permutation for Advanced Intercross Population Analysis. PLoS ONE 3: e1977 doi:10.1371/journal.pone.0001977.

62. LivakJ, SchmittgenT (2001) Analysis of relative gene expression data using real-time quantitativ PCR and the 2−ΔΔCT Method. Methods 25: 402–408.

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