#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Ontogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10


4E10 is an antibody that neutralizes a broad variety of HIV strains. However, 4E10 is uncommon in infected patients and has not been successfully elicited by any vaccine approach attempted. Hurdles to re-eliciting 4E10 include the accumulation of many mutations during development, demonstrated reactivity against host proteins and significant structural flexibility. Lacking a confirmed sequence for precursors of 4E10, we studied the recognition and biophysical properties of an ensemble of eight of the likeliest candidates. Surprisingly, 4E10 gained host reactivity and structural flexibility, but lost stability during development when compared to candidate precursors. However, recognition of HIV was remarkably conserved, despite a considerable improvement in binding. Since these results run counter to those expected from conventional vaccination protocols, 4E10 is unlikely to serve as the basis of a useful HIV vaccine.


Vyšlo v časopise: Ontogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10. PLoS Pathog 10(9): e32767. doi:10.1371/journal.ppat.1004403
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.ppat.1004403

Souhrn

4E10 is an antibody that neutralizes a broad variety of HIV strains. However, 4E10 is uncommon in infected patients and has not been successfully elicited by any vaccine approach attempted. Hurdles to re-eliciting 4E10 include the accumulation of many mutations during development, demonstrated reactivity against host proteins and significant structural flexibility. Lacking a confirmed sequence for precursors of 4E10, we studied the recognition and biophysical properties of an ensemble of eight of the likeliest candidates. Surprisingly, 4E10 gained host reactivity and structural flexibility, but lost stability during development when compared to candidate precursors. However, recognition of HIV was remarkably conserved, despite a considerable improvement in binding. Since these results run counter to those expected from conventional vaccination protocols, 4E10 is unlikely to serve as the basis of a useful HIV vaccine.


Zdroje

1. StephensonKE, BarouchDH (2013) A global approach to HIV-1 vaccine development. Immunol Rev 254: 295–304.

2. HaynesBF, McElrathMJ (2013) Progress in HIV-1 vaccine development. Curr Opin HIV AIDS 8: 326–332.

3. BonsignoriM, AlamSM, LiaoHX, VerkoczyL, TomarasGD, et al. (2012) HIV-1 antibodies from infection and vaccination: insights for guiding vaccine design. Trends Microbiol 20: 532–539.

4. KleinF, MouquetH, DosenovicP, ScheidJF, ScharfL, et al. (2013) Antibodies in HIV-1 vaccine development and therapy. Science 341: 1199–1204.

5. StamatatosL (2012) HIV vaccine design: the neutralizing antibody conundrum. Curr Opin Immunol 24: 316–323.

6. BurtonDR (2002) Antibodies, viruses and vaccines. Nat Rev Immunol 2: 706–713.

7. LangJ, JacksonM, TeytonL, BrunmarkA, KaneK, et al. (1996) B cells are exquisitely sensitive to central tolerance and receptor editing induced by ultralow affinity, membrane-bound antigen. J Exp Med 184: 1685–1697.

8. QiH, EgenJG, HuangAY, GermainRN (2006) Extrafollicular activation of lymph node B cells by antigen-bearing dendritic cells. Science 312: 1672–1676.

9. BatistaFD, NeubergerMS (1998) Affinity dependence of the B cell response to antigen: a threshold, a ceiling, and the importance of off-rate. Immunity 8: 751–759.

10. KimM, SunZY, RandKD, ShiX, SongL, et al. (2011) Antibody mechanics on a membrane-bound HIV segment essential for GP41-targeted viral neutralization. Nat Struct Mol Biol 18: 1235–1243.

11. JulienJP, HuarteN, MaesoR, TanevaSG, CunninghamA, et al. (2010) Ablation of the complementarity-determining region H3 apex of the anti-HIV-1 broadly neutralizing antibody 2F5 abrogates neutralizing capacity without affecting core epitope binding. J Virol 84: 4136–4147.

12. CardosoRM, ZwickMB, StanfieldRL, KunertR, BinleyJM, et al. (2005) Broadly neutralizing anti-HIV antibody 4E10 recognizes a helical conformation of a highly conserved fusion-associated motif in gp41. Immunity 22: 163–173.

13. ZwickMB, LabrijnAF, WangM, SpenlehauerC, SaphireEO, et al. (2001) Broadly neutralizing antibodies targeted to the membrane-proximal external region of human immunodeficiency virus type 1 glycoprotein gp41. J Virol 75: 10892–10905.

14. BinleyJM, WrinT, KorberB, ZwickMB, WangM, et al. (2004) Comprehensive cross-clade neutralization analysis of a panel of anti-human immunodeficiency virus type 1 monoclonal antibodies. J Virol 78: 13232–13252.

15. CorreiaBE, BanYE, HolmesMA, XuH, EllingsonK, et al. (2010) Computational design of epitope-scaffolds allows induction of antibodies specific for a poorly immunogenic HIV vaccine epitope. Structure 18: 1116–1126.

16. LarimoreK, McCormickMW, RobinsHS, GreenbergPD (2012) Shaping of Human Germline IgH Repertoires Revealed by Deep Sequencing. J Immunol 189 (6) 3221–30..

17. FintonKA, LarimoreK, LarmanHB, FriendD, CorrentiC, et al. (2013) Autoreactivity and exceptional CDR plasticity (but not unusual polyspecificity) hinder elicitation of the anti-HIV antibody 4E10. PLoS Pathog 9: e1003639.

18. XuH, SongL, KimM, HolmesMA, KraftZ, et al. (2010) Interactions between lipids and human anti-HIV antibody 4E10 can be reduced without ablating neutralizing activity. J Virol 84: 1076–1088.

19. Doyle-CooperC, HudsonKE, CooperAB, OtaT, SkogP, et al. (2013) Immune tolerance negatively regulates B cells in knock-in mice expressing broadly neutralizing HIV antibody 4E10. J Immunol 191: 3186–3191.

20. ChenY, ZhangJ, HwangKK, Bouton-VervilleH, XiaSM, et al. (2013) Common tolerance mechanisms, but distinct cross-reactivities associated with gp41 and lipids, limit production of HIV-1 broad neutralizing antibodies 2F5 and 4E10. J Immunol 191: 1260–1275.

21. RuprechtCR, KrarupA, ReynellL, MannAM, BrandenbergOF, et al. (2011) MPER-specific antibodies induce gp120 shedding and irreversibly neutralize HIV-1. J Exp Med 208: 439–454.

22. AlamSM, MorelliM, DennisonSM, LiaoHX, ZhangR, et al. (2009) Role of HIV membrane in neutralization by two broadly neutralizing antibodies. Proc Natl Acad Sci U S A 106: 20234–20239.

23. AmzelLM, PoljakRJ (1979) Three-dimensional structure of immunoglobulins. Ann Rev Biochem 48: 961–997.

24. WuTT, KabatEA (1970) An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity. J Exp Med 132: 211–250.

25. BredenF, LepikC, LongoNS, MonteroM, LipskyPE, et al. (2011) Comparison of antibody repertoires produced by HIV-1 infection, other chronic and acute infections, and systemic autoimmune disease. PLoS One 6: e16857.

26. XiaoX, ChenW, FengY, ZhuZ, PrabakaranP, et al. (2009) Germline-like predecessors of broadly neutralizing antibodies lack measurable binding to HIV-1 envelope glycoproteins: implications for evasion of immune responses and design of vaccine immunogens. Biochem Biophys Res Commun 390: 404–409.

27. ScheidJF, MouquetH, UeberheideB, DiskinR, KleinF, et al. (2011) Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding. Science 333: 1633–1637.

28. ZhouT, GeorgievI, WuX, YangZY, DaiK, et al. (2010) Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01. Science 329: 811–817.

29. McGuireAT, HootS, DreyerAM, LippyA, StuartA, et al. (2013) Engineering HIV envelope protein to activate germline B cell receptors of broadly neutralizing anti-CD4 binding site antibodies. J Exp Med 210: 655–663.

30. BatesJT, KeeferCJ, UtleyTJ, CorreiaBE, SchiefWR, et al. (2013) Reversion of somatic mutations of the respiratory syncytial virus-specific human monoclonal antibody Fab19 reveal a direct relationship between association rate and neutralizing potency. J Immunol 190: 3732–3739.

31. WuX, ZhouT, ZhuJ, ZhangB, GeorgievI, et al. (2011) Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing. Science 333: 1593–1602.

32. JohnsonG, WuTT (2000) Kabat database and its applications: 30 years after the first variability plot. Nucleic Acids Res 28: 214–218.

33. JohnsonG, WuTT (1998) Preferred CDRH3 lengths for antibodies with defined specificities. Int Immunol 10: 1801–1805.

34. MaBJ, AlamSM, GoEP, LuX, DesaireH, et al. (2011) Envelope deglycosylation enhances antigenicity of HIV-1 gp41 epitopes for both broad neutralizing antibodies and their unmutated ancestor antibodies. PLoS Pathog 7: e1002200.

35. FooteJ, EisenHN (1995) Kinetic and affinity limits on antibodies produced during immune responses. Proc Natl Acad Sci U S A 92: 1254–1256.

36. ThomsonCA, BrysonS, McLeanGR, CreaghAL, PaiEF, et al. (2008) Germline V-genes sculpt the binding site of a family of antibodies neutralizing human cytomegalovirus. EMBO J 27: 2592–2602.

37. ScharfL, WestAPJr, GaoH, LeeT, ScheidJF, et al. (2013) Structural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody. Proc Natl Acad Sci U S A 110: 6049–6054.

38. WangF, SenS, ZhangY, AhmadI, ZhuX, et al. (2013) Somatic hypermutation maintains antibody thermodynamic stability during affinity maturation. Proc Natl Acad Sci U S A 110: 4261–4266.

39. LingwoodD, McTamneyPM, YassineHM, WhittleJR, GuoX, et al. (2012) Structural and genetic basis for development of broadly neutralizing influenza antibodies. Nature 489: 566–570.

40. SchmidtAG, XuH, KhanAR, O'DonnellT, KhuranaS, et al. (2013) Preconfiguration of the antigen-binding site during affinity maturation of a broadly neutralizing influenza virus antibody. Proc Natl Acad Sci U S A 110: 264–269.

41. WedemayerGJ, PattenPA, WangLH, SchultzPG, StevensRC (1997) Structural insights into the evolution of an antibody combining site. Science 276: 1665–1669.

42. ManivelV, SahooNC, SalunkeDM, RaoKV (2000) Maturation of an antibody response is governed by modulations in flexibility of the antigen-combining site. Immunity 13: 611–620.

43. BaborM, KortemmeT (2009) Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility. Proteins 75: 846–858.

44. SethiDK, AgarwalA, ManivelV, RaoKV, SalunkeDM (2006) Differential epitope positioning within the germline antibody paratope enhances promiscuity in the primary immune response. Immunity 24: 429–438.

45. YinJ, BeuscherAEt, AndryskiSE, StevensRC, SchultzPG (2003) Structural plasticity and the evolution of antibody affinity and specificity. J Mol Biol 330: 651–656.

46. YinJ, MundorffEC, YangPL, WendtKU, HanwayD, et al. (2001) A comparative analysis of the immunological evolution of antibody 28B4. Biochemistry 40: 10764–10773.

47. NguyenHP, SetoNO, MacKenzieCR, BradeL, KosmaP, et al. (2003) Germline antibody recognition of distinct carbohydrate epitopes. Nat Struct Biol 10: 1019–1025.

48. PaulingL (1940) Theory of the Structure and Process of Formation of Antibodies. J Am Chem Soc 62: 2643–2657.

49. ChangeuxJP, EdelsteinS (2011) Conformational selection or induced fit? 50 years of debate resolved. F1000 Biol Rep 3: 19.

50. LarmanHB, ZhaoZ, LasersonU, LiMZ, CicciaA, et al. (2011) Autoantigen discovery with a synthetic human peptidome. Nat Biotechnol 29: 535–541.

51. BlishCA, NedellecR, MandaliyaK, MosierDE, OverbaughJ (2007) HIV-1 subtype A envelope variants from early in infection have variable sensitivity to neutralization and to inhibitors of viral entry. AIDS 21: 693–702.

52. Cheng-MayerC, LevyJA (1988) Distinct biological and serological properties of human immunodeficiency viruses from the brain. Ann Neurol 23 Suppl: S58–61.

53. DerbyNR, KraftZ, KanE, CrooksET, BarnettSW, et al. (2006) Antibody responses elicited in macaques immunized with human immunodeficiency virus type 1 (HIV-1) SF162-derived gp140 envelope immunogens: comparison with those elicited during homologous simian/human immunodeficiency virus SHIVSF162P4 and heterologous HIV-1 infection. J Virol 80: 8745–8762.

54. DavenportTM, FriendD, EllingsonK, XuH, CaldwellZ, et al. (2011) Binding interactions between soluble HIV envelope glycoproteins and quaternary-structure-specific MAbs PG9 and PG16. J Virol 85: 7095–7107.

55. CorreiaBE, BanYE, FriendDJ, EllingsonK, XuH, et al. (2011) Computational protein design using flexible backbone remodeling and resurfacing: case studies in structure-based antigen design. J Mol Biol 405: 284–297.

56. LawrenceM, ColmanPM (1993) Shape complementarity at protein/protein interfaces. J Mol Biol 234: 946–950.

57. BurtonDR (2010) Scaffolding to build a rational vaccine design strategy. Proc Natl Acad Sci U S A 107: 17859–17860.

58. GravesSS, StoneDM, LoretzC, PetersonLJ, LesnikovaM, et al. (2011) Antagonistic and agonistic anti-canine CD28 monoclonal antibodies: tools for allogeneic transplantation. Transplantation 91: 833–840.

59. GornyMK, ConleyAJ, KarwowskaS, BuchbinderA, XuJY, et al. (1992) Neutralization of diverse human immunodeficiency virus type 1 variants by an anti-V3 human monoclonal antibody. J Virol 66: 7538–7542.

60. RobenP, MooreJP, ThaliM, SodroskiJ, BarbasCF3rd, et al. (1994) Recognition properties of a panel of human recombinant Fab fragments to the CD4 binding site of gp120 that show differing abilities to neutralize human immunodeficiency virus type 1. J Virol 68: 4821–4828.

61. KleinF, DiskinR, ScheidJF, GaeblerC, MouquetH, et al. (2013) Somatic mutations of the immunoglobulin framework are generally required for broad and potent HIV-1 neutralization. Cell 153: 126–138.

62. LavoieTB, MohanS, LipschultzCA, GrivelJC, LiY, et al. (1999) Structural differences among monoclonal antibodies with distinct fine specificities and kinetic properties. Mol Immunol 36: 1189–1205.

63. Souto-CarneiroMM, LongoNS, RussDE, SunHW, LipskyPE (2004) Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER. J Immunol 172: 6790–6802.

64. BrochetX, LefrancMP, GiudicelliV (2008) IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis. Nucleic Acids Res 36: W503–508.

65. GiudicelliV, ChaumeD, LefrancMP (2004) IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis. Nucleic Acids Res 32: W435–440.

66. WangX, WuD, ZhengS, SunJ, TaoL, et al. (2008) Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies. BMC Bioinformatics 9 Suppl 12: S20.

67. VolpeJM, CowellLG, KeplerTB (2006) SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations. Bioinformatics 22: 438–444.

68. GaetaBA, MalmingHR, JacksonKJ, BainME, WilsonP, et al. (2007) iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences. Bioinformatics 23: 1580–1587.

69. MyszkaDG (1999) Improving biosensor analysis. J Mol Recognit 12: 279–284.

70. Otwinowski Z, Minor W (1997) Processing of X-ray Diffraction Data Collected in Oscillation Mode. In: Jr CWC, Sweet RM, editors. Meth Enzymol. NY: Academic Press. pp. 307–326.

71. PflugrathJW (1999) The finer things in X-ray diffraction data collection. Acta Crystallogr D Biol Crystallogr 55: 1718–1725.

72. McCoyAJ, Grosse-KunstleveRW, AdamsPD, WinnMD, StoroniLC, et al. (2007) Phaser crystallographic software. Journal of Applied Crystallography 40: 658–674.

73. Collaborative Computational Project N (1994) The CCP4 Suite: Programs for Protein Crystallography. Acta Cryst D50: 760–763.

74. PottertonE, BriggsP, TurkenburgM, DodsonE (2003) A graphical user interface to the CCP4 program suite. Acta Crystallogr D Biol Crystallogr 59: 1131–1137.

75. EmsleyP, CowtanK (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60: 2126–2132.

76. MurshudovGN, VaginAA, DodsonEJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 53: 240–255.

77. LaskowskiRA, MacArthurMW, MossDS, ThorntonJM (1993) PROCHECK: a program to check the stereochemical quality of protein structures. Journal of Applied Crystallography 26: 283–291.

78. DavisIW, Leaver-FayA, ChenVB, BlockJN, KapralGJ, et al. (2007) MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res 35: W375–383.

79. BermanHM, WestbrookJ, FengZ, GillilandG, BhatTN, et al. (2000) The Protein Data Bank. Nucleic Acids Research 28: 235–242.

80. PettitFK, BareE, TsaiA, BowieJU (2007) HotPatch: a statistical approach to finding biologically relevant features on protein surfaces. J Mol Biol 369: 863–879.

Štítky
Hygiena a epidemiológia Infekčné lekárstvo Laboratórium

Článok vyšiel v časopise

PLOS Pathogens


2014 Číslo 9
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Získaná hemofilie - Povědomí o nemoci a její diagnostika
nový kurz

Eozinofilní granulomatóza s polyangiitidou
Autori: doc. MUDr. Martina Doubková, Ph.D.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#