#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Re-replication of a Centromere Induces Chromosomal Instability and Aneuploidy


The stable inheritance of genetic information requires an elaborate mitotic machinery that acts on the centromeres of chromosomes to ensure their precise segregation. Errors in this segregation can lead to aneuploidy, an unbalanced chromosomal state in which some chromosomes have different copy number than others. Because aneuploidy is associated with developmental abnormalities and diseases such as cancer, there is considerable interest in understanding how these segregation errors arise. Much of this interest has focused on identifying defects in proteins that make up the mitotic machinery. Here, we show that defects in a completely separate process, the control of DNA replication initiation, can lead to chromosome segregation errors as a result of inappropriate re-replication of centromeres. Similar deregulation of replication initiation proteins has been observed in primary human tumors and shown to promote oncogenesis in mouse models. Together, these results raise the possibility that centromeric re-replication may be an additional source of aneuploidy in cancer. In combination with our previous work showing that re-replication is a potent inducer of gene amplification, these results also highlight the versatility of re-replication as a source of genomic instability.


Vyšlo v časopise: Re-replication of a Centromere Induces Chromosomal Instability and Aneuploidy. PLoS Genet 11(4): e32767. doi:10.1371/journal.pgen.1005039
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1005039

Souhrn

The stable inheritance of genetic information requires an elaborate mitotic machinery that acts on the centromeres of chromosomes to ensure their precise segregation. Errors in this segregation can lead to aneuploidy, an unbalanced chromosomal state in which some chromosomes have different copy number than others. Because aneuploidy is associated with developmental abnormalities and diseases such as cancer, there is considerable interest in understanding how these segregation errors arise. Much of this interest has focused on identifying defects in proteins that make up the mitotic machinery. Here, we show that defects in a completely separate process, the control of DNA replication initiation, can lead to chromosome segregation errors as a result of inappropriate re-replication of centromeres. Similar deregulation of replication initiation proteins has been observed in primary human tumors and shown to promote oncogenesis in mouse models. Together, these results raise the possibility that centromeric re-replication may be an additional source of aneuploidy in cancer. In combination with our previous work showing that re-replication is a potent inducer of gene amplification, these results also highlight the versatility of re-replication as a source of genomic instability.


Zdroje

1. Arias EE, Walter JC (2007) Strength in numbers: preventing rereplication via multiple mechanisms in eukaryotic cells. Genes Dev 21: 497–518. 17344412

2. Hook SS, Lin JJ, Dutta A (2007) Mechanisms to control rereplication and implications for cancer. Curr Opin Cell Biol 19: 663–671. 18053699

3. Siddiqui K, On KF, Diffley JFX (2013) Regulating DNA Replication in Eukarya. Cold Spring Harb Perspect Biol.

4. Green BM, Morreale RJ, Ozaydin B, Derisi JL, Li JJ (2006) Genome-wide mapping of DNA synthesis in Saccharomyces cerevisiae reveals that mechanisms preventing reinitiation of DNA replication are not redundant. Mol Biol Cell 17: 2401–2414. 16481397

5. Wilmes GM, Archambault V, Austin RJ, Jacobson MD, Bell SP, et al. (2004) Interaction of the S-phase cyclin Clb5 with an “RXL” docking sequence in the initiator protein Orc6 provides an origin-localized replication control switch. Genes Dev 18: 981–991. 15105375

6. Green BM, Finn KJ, Li JJ (2010) Loss of DNA replication control is a potent inducer of gene amplification. Science 329: 943–946. doi: 10.1126/science.1190966 20724634

7. Biggins S (2013) The composition, functions, and regulation of the budding yeast kinetochore. Genetics 194: 817–846. doi: 10.1534/genetics.112.145276 23908374

8. Tanaka TU (2010) Kinetochore-microtubule interactions: steps towards bi-orientation. EMBO J 29: 4070–4082. doi: 10.1038/emboj.2010.294 21102558

9. Oliveira RA, Nasmyth K (2010) Getting through anaphase: splitting the sisters and beyond. Biochem Soc Trans 38: 1639–1644. doi: 10.1042/BST0381639 21118140

10. Lara-Gonzalez P, Westhorpe FG, Taylor SS (2012) The spindle assembly checkpoint. Curr Biol 22: R966–980. doi: 10.1016/j.cub.2012.10.006 23174302

11. Koshland D, Kent JC, Hartwell LH (1985) Genetic analysis of the mitotic transmission of minichromosomes. Cell 40: 393–403. 3881185

12. Wood JS (1982) Genetic effects of methyl benzimidazole-2-yl-carbamate on Saccharomyces cerevisiae. Mol Cell Biol 2: 1064–1079. 6757720

13. Zimmermann FK, Mayer VW, Scheel I (1984) Induction of aneuploidy by oncodazole (nocodazole), an anti-tubulin agent, and acetone. Mutat Res 141: 15–18. 6384770

14. Richardson CD, Li JJ (2014) Regulatory mechanisms that prevent reinitiation of DNA replication can be locally modulated at origins by nearby sequence elements. PLoS Genet 10: e1004358. doi: 10.1371/journal.pgen.1004358 24945837

15. Hartwell LH, Smith D (1985) Altered fidelity of mitotic chromosome transmission in cell cycle mutants of S. cerevisiae. Genetics 110: 381–395. 3894160

16. Klein HL (2001) Spontaneous chromosome loss in Saccharomyces cerevisiae is suppressed by DNA damage checkpoint functions. Genetics 159: 1501–1509. 11779792

17. Covo S, Puccia CM, Argueso JL, Gordenin DA, Resnick MA (2014) The sister chromatid cohesion pathway suppresses multiple chromosome gain and chromosome amplification. Genetics 196: 373–384. doi: 10.1534/genetics.113.159202 24298060

18. Finn KJ, Li JJ (2013) Single-Stranded Annealing Induced by Re-Initiation of Replication Origins Provides a Novel and Efficient Mechanism for Generating Copy Number Expansion via Non-Allelic Homologous Recombination. PLoS Genet 9: e1003192. doi: 10.1371/journal.pgen.1003192 23300490

19. Kass EM, Jasin M (2010) Collaboration and competition between DNA double-strand break repair pathways. FEBS Lett 584: 3703–3708. doi: 10.1016/j.febslet.2010.07.057 20691183

20. Symington LS, Gautier J (2011) Double-strand break end resection and repair pathway choice. Annu Rev Genet 45: 247–271. doi: 10.1146/annurev-genet-110410-132435 21910633

21. Grabarz A, Barascu A, Guirouilh-Barbat J, Lopez BS (2012) Initiation of DNA double strand break repair: signaling and single-stranded resection dictate the choice between homologous recombination, non-homologous end-joining and alternative end-joining. Am J Cancer Res 2: 249–268. 22679557

22. Mortensen UH, Lisby M, Rothstein R (2009) Rad52. Curr Biol 19: R676–677. doi: 10.1016/j.cub.2009.06.001 19706272

23. San Filippo J, Sung P, Klein H (2008) Mechanism of eukaryotic homologous recombination. Annu Rev Biochem 77: 229–257. doi: 10.1146/annurev.biochem.77.061306.125255 18275380

24. Lieber MR (2010) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79: 181–211. doi: 10.1146/annurev.biochem.052308.093131 20192759

25. Archambault V, Ikui AE, Drapkin BJ, Cross FR (2005) Disruption of mechanisms that prevent rereplication triggers a DNA damage response. Mol Cell Biol 25: 6707–6721. 16024805

26. Green BM, Li JJ (2005) Loss of rereplication control in Saccharomyces cerevisiae results in extensive DNA damage. Mol Biol Cell 16: 421–432. 15537702

27. Melixetian M, Ballabeni A, Masiero L, Gasparini P, Zamponi R, et al. (2004) Loss of Geminin induces rereplication in the presence of functional p53. The Journal of Cell Biology 165: 473–482. 15159417

28. Zhu W, Dutta A (2006) An ATR- and BRCA1-mediated Fanconi anemia pathway is required for activating the G2/M checkpoint and DNA damage repair upon rereplication. Mol Cell Biol 26: 4601–4611. 16738325

29. Pearson CG, Maddox PS, Salmon ED, Bloom K (2001) Budding yeast chromosome structure and dynamics during mitosis. J Cell Biol 152: 1255–1266. 11257125

30. He X, Asthana S, Sorger PK (2000) Transient sister chromatid separation and elastic deformation of chromosomes during mitosis in budding yeast. Cell 101: 763–775. 10892747

31. Goshima G, Yanagida M (2001) Time course analysis of precocious separation of sister centromeres in budding yeast: continuously separated or frequently reassociated? Genes Cells 6: 765–773. 11554923

32. Goshima G, Yanagida M (2000) Establishing biorientation occurs with precocious separation of the sister kinetochores, but not the arms, in the early spindle of budding yeast. Cell 100: 619–633. 10761928

33. Ocampo-Hafalla MT, Katou Y, Shirahige K, Uhlmann F (2007) Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting. Chromosoma 116: 531–544. 17763979

34. Kitamura E, Tanaka K, Kitamura Y, Tanaka TU (2007) Kinetochore microtubule interaction during S phase in Saccharomyces cerevisiae. Genes Dev 21: 3319–3330. 18079178

35. Collins KA, Castillo AR, Tatsutani SY, Biggins S (2005) De novo kinetochore assembly requires the centromeric histone H3 variant. Mol Biol Cell 16: 5649–5660. 16207811

36. Gascoigne KE, Cheeseman IM (2013) Induced dicentric chromosome formation promotes genomic rearrangements and tumorigenesis. Chromosome Res 21: 407–418. doi: 10.1007/s10577-013-9368-6 23793898

37. Stimpson KM, Matheny JE, Sullivan BA (2012) Dicentric chromosomes: unique models to study centromere function and inactivation. Chromosome Res 20: 595–605. doi: 10.1007/s10577-012-9302-3 22801777

38. Hill A, Bloom K (1989) Acquisition and processing of a conditional dicentric chromosome in Saccharomyces cerevisiae. Mol Cell Biol 9: 1368–1370. 2657392

39. Paques F, Haber JE (1999) Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol Mol Biol Rev 63: 349–404. 10357855

40. Roschke AV, Rozenblum E (2013) Multi-layered cancer chromosomal instability phenotype. Front Oncol 3: 302. doi: 10.3389/fonc.2013.00302 24377086

41. Mitelman F, Johansson B, Mertens FE (2012) Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer. http://cgapncinihgov/Chromosomes/Mitelman.

42. Zasadil LM, Britigan EM, Weaver BA (2013) 2n or not 2n: Aneuploidy, polyploidy and chromosomal instability in primary and tumor cells. Semin Cell Dev Biol 24: 370–379. doi: 10.1016/j.semcdb.2013.02.001 23416057

43. Pfau SJ, Amon A (2012) Chromosomal instability and aneuploidy in cancer: from yeast to man. EMBO Rep 13: 515–527. doi: 10.1038/embor.2012.65 22614003

44. Sheltzer JM, Blank HM, Pfau SJ, Tange Y, George BM, et al. (2011) Aneuploidy drives genomic instability in yeast. Science 333: 1026–1030. doi: 10.1126/science.1206412 21852501

45. Orr B, Compton DA (2013) A double-edged sword: how oncogenes and tumor suppressor genes can contribute to chromosomal instability. Front Oncol 3: 164. doi: 10.3389/fonc.2013.00164 23825799

46. Ganem NJ, Godinho SA, Pellman D (2009) A mechanism linking extra centrosomes to chromosomal instability. Nature 460: 278–282. doi: 10.1038/nature08136 19506557

47. Chan JY (2011) A clinical overview of centrosome amplification in human cancers. Int J Biol Sci 7: 1122–1144. 22043171

48. Abbas T, Keaton MA, Dutta A (2013) Genomic instability in cancer. Cold Spring Harb Perspect Biol 5: a012914. doi: 10.1101/cshperspect.a012914 23335075

49. Blow JJ, Gillespie PJ (2008) Replication licensing and cancer—a fatal entanglement? Nat Rev Cancer 8: 799–806. doi: 10.1038/nrc2500 18756287

50. Vaziri C, Saxena S, Jeon Y, Lee C, Murata K, et al. (2003) A p53-dependent checkpoint pathway prevents rereplication. Mol Cell 11: 997–1008. 12718885

51. Zhu W, Chen Y, Dutta A (2004) Rereplication by depletion of geminin is seen regardless of p53 status and activates a G2/M checkpoint. Mol Cell Biol 24: 7140–7150. 15282313

52. Mihaylov IS, Kondo T, Jones L, Ryzhikov S, Tanaka J, et al. (2002) Control of DNA replication and chromosome ploidy by geminin and cyclin A. Mol Cell Biol 22: 1868–1880. 11865064

53. Kim J, Feng H, Kipreos ET (2007) C. elegans CUL-4 prevents rereplication by promoting the nuclear export of CDC-6 via a CKI-1-dependent pathway. Curr Biol 17: 966–972. 17509881

54. Nishitani H, Nurse P (1995) p65cdc18 plays a major role controlling the initiation of DNA replication in fission yeast. Cell 83: 397–405. 8521469

55. Thomer M, May NR, Aggarwal BD, Kwok G, Calvi BR (2004) Drosophila double-parked is sufficient to induce re-replication during development and is regulated by cyclin E/CDK2. Development 131: 4807–4818. 15342466

56. Bonds L, Baker P, Gup C, Shroyer KR (2002) Immunohistochemical localization of cdc6 in squamous and glandular neoplasia of the uterine cervix. Arch Pathol Lab Med 126: 1164–1168. 12296751

57. Karakaidos P, Taraviras S, Vassiliou LV, Zacharatos P, Kastrinakis NG, et al. (2004) Overexpression of the replication licensing regulators hCdt1 and hCdc6 characterizes a subset of non-small-cell lung carcinomas: synergistic effect with mutant p53 on tumor growth and chromosomal instability—evidence of E2F-1 transcriptional control over hCdt1. Am J Pathol 165: 1351–1365. 15466399

58. Liontos M, Koutsami M, Sideridou M, Evangelou K, Kletsas D, et al. (2007) Deregulated overexpression of hCdt1 and hCdc6 promotes malignant behavior. Cancer Res 67: 10899–10909. 18006835

59. Murphy N, Ring M, Heffron CCBB, Martin CM, McGuinness E, et al. (2005) Quantitation of CDC6 and MCM5 mRNA in cervical intraepithelial neoplasia and invasive squamous cell carcinoma of the cervix. Mod Pathol 18: 844–849. 15696126

60. Ren B, Yu G, Tseng GC, Cieply K, Gavel T, et al. (2006) MCM7 amplification and overexpression are associated with prostate cancer progression. Oncogene 25: 1090–1098. 16247466

61. Santarius T, Shipley J, Brewer D, Stratton MR, Cooper CS (2010) A census of amplified and overexpressed human cancer genes. Nat Rev Cancer 10: 59–64. doi: 10.1038/nrc2771 20029424

62. Arentson E, Faloon P, Seo J, Moon E, Studts JM, et al. (2002) Oncogenic potential of the DNA replication licensing protein CDT1. Oncogene 21: 1150–1158. 11850834

63. Seo J, Chung YS, Sharma GG, Moon E, Burack WR, et al. (2005) Cdt1 transgenic mice develop lymphoblastic lymphoma in the absence of p53. Oncogene 24: 8176–8186. 16261166

64. Lin JJ, Milhollen MA, Smith PG, Narayanan U, Dutta A (2010) NEDD8-targeting drug MLN4924 elicits DNA rereplication by stabilizing Cdt1 in S phase, triggering checkpoint activation, apoptosis, and senescence in cancer cells. Cancer Res 70: 10310–10320. doi: 10.1158/0008-5472.CAN-10-2062 21159650

65. Lovejoy CA, Lock K, Yenamandra A, Cortez D (2006) DDB1 maintains genome integrity through regulation of Cdt1. Mol Cell Biol 26: 7977–7990. 16940174

66. Jin J, Arias EE, Chen J, Harper JW, Walter JC (2006) A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1. Mol Cell 23: 709–721. 16949367

67. Dorn ES, Chastain PD 2nd, Hall JR, Cook JG (2009) Analysis of re-replication from deregulated origin licensing by DNA fiber spreading. Nucleic Acids Res 37: 60–69. doi: 10.1093/nar/gkn912 19010964

68. Ding Q, MacAlpine DM (2010) Preferential re-replication of Drosophila heterochromatin in the absence of geminin. PLoS Genet 6: e1001112. doi: 10.1371/journal.pgen.1001112 20838463

69. Kiang L, Heichinger C, Watt S, Bahler J, Nurse P (2010) Specific replication origins promote DNA amplification in fission yeast. J Cell Sci 123: 3047–3051. doi: 10.1242/jcs.067470 20736315

70. Tatsumi Y, Sugimoto N, Yugawa T, Narisawa-Saito M, Kiyono T, et al. (2006) Deregulation of Cdt1 induces chromosomal damage without rereplication and leads to chromosomal instability. J Cell Sci 119: 3128–3140. 16835273

71. Sikorski RS, Hieter P (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19–27. 2659436

72. Rohner S, Gasser SM, Meister P (2008) Modules for cloning-free chromatin tagging in Saccharomyces cerevisae. Yeast 25: 235–239. doi: 10.1002/yea.1580 18302313

73. Straight AF, Marshall WF, Sedat JW, Murray AW (1997) Mitosis in living budding yeast: anaphase A but no metaphase plate. Science 277: 574–578. 9228009

74. Nguyen VQ, Co C, Irie K, Li JJ (2000) Clb/Cdc28 kinases promote nuclear export of the replication initiator proteins Mcm2–7. Curr Biol 10: 195–205. 10704410

75. Nguyen VQ, Co C, Li JJ (2001) Cyclin-dependent kinases prevent DNA re-replication through multiple mechanisms. Nature 411: 1068–1073. 11429609

76. Berlin V, Brill JA, Trueheart J, Boeke JD, Fink GR (1991) Genetic screens and selections for cell and nuclear fusion mutants. Methods Enzymol 194: 774–792. 2005824

77. Goldstein AL, McCusker JH (1999) Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15: 1541–1553. 10514571

78. Sherman F (2002) Getting started with yeast. Methods Enzymol 350: 3–41. 12073320

79. Labib K, Diffley JF, Kearsey SE (1999) G1-phase and B-type cyclins exclude the DNA-replication factor Mcm4 from the nucleus. Nat Cell Biol 1: 415–422. 10559985

80. Tanaka S, Diffley JF (2002) Interdependent nuclear accumulation of budding yeast Cdt1 and Mcm2–7 during G1 phase. Nat Cell Biol 4: 198–207. 11836525

81. Piatti S, Lengauer C, Nasmyth K (1995) Cdc6 is an unstable protein whose de novo synthesis in G1 is important for the onset of S phase and for preventing a ‘reductional’ anaphase in the budding yeast Saccharomyces cerevisiae. EMBO J 14: 3788–3799. 7641697

82. Drury LS, Diffley JF (2009) Factors affecting the diversity of DNA replication licensing control in eukaryotes. Curr Biol 19: 530–535. doi: 10.1016/j.cub.2009.02.034 19285403

83. Drury LS, Perkins G, Diffley JF (2000) The cyclin-dependent kinase Cdc28p regulates distinct modes of Cdc6p proteolysis during the budding yeast cell cycle. Curr Biol 10: 231–240. 10712901

84. Perkins G, Drury LS, Diffley JF (2001) Separate SCF(CDC4) recognition elements target Cdc6 for proteolysis in S phase and mitosis. EMBO J 20: 4836–4845. 11532947

85. Mimura S, Seki T, Tanaka S, Diffley JF (2004) Phosphorylation-dependent binding of mitotic cyclins to Cdc6 contributes to DNA replication control. Nature 431: 1118–1123. 15496876

86. Edgar R, Domrachev M, Lash AE (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207–210. 11752295

87. Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, et al. (2012) Fiji: an open-source platform for biological-image analysis. Nat Methods 9: 676–682. doi: 10.1038/nmeth.2019 22743772

Štítky
Genetika Reprodukčná medicína

Článok vyšiel v časopise

PLOS Genetics


2015 Číslo 4
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Získaná hemofilie - Povědomí o nemoci a její diagnostika
nový kurz

Eozinofilní granulomatóza s polyangiitidou
Autori: doc. MUDr. Martina Doubková, Ph.D.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#