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Synthesizing and Salvaging NAD: Lessons Learned from


The essential coenzyme nicotinamide adenine dinucleotide (NAD+) plays important roles in metabolic reactions and cell regulation in all organisms. Bacteria, fungi, plants, and animals use different pathways to synthesize NAD+. Our molecular and genetic data demonstrate that in the unicellular green alga Chlamydomonas NAD+ is synthesized from aspartate (de novo synthesis), as in plants, or nicotinamide, as in mammals (salvage synthesis). The de novo pathway requires five different enzymes: L-aspartate oxidase (ASO), quinolinate synthetase (QS), quinolate phosphoribosyltransferase (QPT), nicotinate/nicotinamide mononucleotide adenylyltransferase (NMNAT), and NAD+ synthetase (NS). Sequence similarity searches, gene isolation and sequencing of mutant loci indicate that mutations in each enzyme result in a nicotinamide-requiring mutant phenotype in the previously isolated nic mutants. We rescued the mutant phenotype by the introduction of BAC DNA (nic2-1 and nic13-1) or plasmids with cloned genes (nic1-1 and nic15-1) into the mutants. NMNAT, which is also in the de novo pathway, and nicotinamide phosphoribosyltransferase (NAMPT) constitute the nicotinamide-dependent salvage pathway. A mutation in NAMPT (npt1-1) has no obvious growth defect and is not nicotinamide-dependent. However, double mutant strains with the npt1-1 mutation and any of the nic mutations are inviable. When the de novo pathway is inactive, the salvage pathway is essential to Chlamydomonas for the synthesis of NAD+. A homolog of the human SIRT6-like gene, SRT2, is upregulated in the NS mutant, which shows a longer vegetative life span than wild-type cells. Our results suggest that Chlamydomonas is an excellent model system to study NAD+ metabolism and cell longevity.


Vyšlo v časopise: Synthesizing and Salvaging NAD: Lessons Learned from. PLoS Genet 6(9): e32767. doi:10.1371/journal.pgen.1001105
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1001105

Souhrn

The essential coenzyme nicotinamide adenine dinucleotide (NAD+) plays important roles in metabolic reactions and cell regulation in all organisms. Bacteria, fungi, plants, and animals use different pathways to synthesize NAD+. Our molecular and genetic data demonstrate that in the unicellular green alga Chlamydomonas NAD+ is synthesized from aspartate (de novo synthesis), as in plants, or nicotinamide, as in mammals (salvage synthesis). The de novo pathway requires five different enzymes: L-aspartate oxidase (ASO), quinolinate synthetase (QS), quinolate phosphoribosyltransferase (QPT), nicotinate/nicotinamide mononucleotide adenylyltransferase (NMNAT), and NAD+ synthetase (NS). Sequence similarity searches, gene isolation and sequencing of mutant loci indicate that mutations in each enzyme result in a nicotinamide-requiring mutant phenotype in the previously isolated nic mutants. We rescued the mutant phenotype by the introduction of BAC DNA (nic2-1 and nic13-1) or plasmids with cloned genes (nic1-1 and nic15-1) into the mutants. NMNAT, which is also in the de novo pathway, and nicotinamide phosphoribosyltransferase (NAMPT) constitute the nicotinamide-dependent salvage pathway. A mutation in NAMPT (npt1-1) has no obvious growth defect and is not nicotinamide-dependent. However, double mutant strains with the npt1-1 mutation and any of the nic mutations are inviable. When the de novo pathway is inactive, the salvage pathway is essential to Chlamydomonas for the synthesis of NAD+. A homolog of the human SIRT6-like gene, SRT2, is upregulated in the NS mutant, which shows a longer vegetative life span than wild-type cells. Our results suggest that Chlamydomonas is an excellent model system to study NAD+ metabolism and cell longevity.


Zdroje

1. BakkerBM

OverkampKM

MarisAJA

KotterP

LuttikMAH

2001 Stoichiometry and compartmentation of NADH metabolism in Saccharomyces cerevisiae. FEMS Microbiol Rev 25 15 37

2. BelenkyP

BoganKL

BrennerC

2007 NAD+ metabolism in health and disease. Trends Biochem Sci 32 12 19

3. VrablikTL

HuangL

LangeSE

Hanna-RoseW

2009 Nicotinamidase modulation of NAD+ biosynthesis and nicotinamide levels separately affect reproductive development and cell survival in C. elegans. Development 136 3637 3746

4. TannyJC

DowdGJ

HuangJ

HilzH

MoazedD

1999 An enzymatic activity in the yeast Sir2 protein that is essential for gene silencing. Cell 99 735 745

5. OberdoerfferP

MichanS

McVayM

MostoslavskyR

VannJ

2008 SIRT1 redistribution on chromatin promotes genomic stability but alters gene expression during aging. Cell 135 907 918

6. InoueT

HiratsukaM

OsakiM

OshimuraM

2007 The molecular biology of mammalian SIRT proteins: SIRT2 in cell cycle regulation. Cell Cycle 6 1011 1018

7. MostoslavskyR

ChuaKF

LombardDB

PangWW

FischerMR

2006 Genomic instability and aging-like phenotype in the absence of mammalian SIRT6. Cell 124 315 329

8. ZhongL

D'UrsoA

ToiberD

SebastianC

HenryRE

2010 The histone deacetylase Sirt6 regulates glucose homeostasis via Hif1 [alpha]. Cell 140 280 293

9. LuoJ

NikolaevAY

ImaiS

ChenD

SuF

2001 Negative control of p53 by Sir2a promotes cell survival under stress. Cell 107 137 148

10. FryeRA

2000 Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins. Biochem Biophys Res Commun 273 793 798

11. GreissS

GartnerA

2009 Sirtuin/Sir2 phylogeny, evolutionary considerations and structural conservation. Mol Cells 28 407 415

12. MichishitaE

McCordRA

BerberE

KioiM

Padilla-NashH

2008 SIRT6 is a histone H3 lysine 9 deacetylase that modulates telomeric chromatin. Nature 452 492 496

13. FordE

VoitR

LisztG

MaginC

GrummtI

2006 Mammalian Sir2 homolog SIRT7 is an activator of RNA polymerase I transcription. Genes Dev 20 1075 1080

14. GrobA

RousselP

WrightJ

McStayB

Hernandez-VerdunD

2009 Involvement of SIRT7 in resumption of rDNA transcription at the exit from mitosis. J Cell Sci 122 489

15. MerchantSS

ProchnikSE

VallonO

HarrisEH

KarpowiczSJ

2007 The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318 245 250

16. ArchibaldJM

2009 GENOMICS: Green Evolution, Green Revolution. Science 324 191 192

17. KatohA

HashimotoT

2004 Molecular biology of pyridine nucleotide and nicotine biosynthesis. Front Biosci 9 1577 1586

18. EversoleRA

1956 Biochemical mutants of Chlamydomonas reinhardi. Am J Botany 43 404 407

19. HarrisEH

1989 The Chlamydomonas Sourcebook: a comprehensive guide to biology and laboratory use San Diego Academic Press xiv, 780

20. FerrisPJ

1995 Localization of the nic-7, ac-29 and thi-10 genes within the mating-type locus of Chlamydomonas reinhardtii. Genetics 141 543 549

21. FerrisPJ

ArmbrustEV

GoodenoughUW

2002 Genetic structure of the mating-type locus of Chlamydomonas reinhardtii. Genetics 160 181 200

22. DutcherSK

PowerJ

GallowayRE

PorterME

1991 Reappraisal of the genetic map of Chlamydomonas reinhardtii. J Hered 82 295 301

23. EbersoldWT

LevineRP

1959 A genetic analysis of linkage group I of Chlamydomonas reinhardi. Z Vererbungsl 90 74 82

24. EbersoldWT

LevineRP

LevineEE

OlmstedMA

1962 Linkage maps in Chlamydomonas reinhardi. Genetics 47 531 543

25. SmythRD

MartinekGW

EbersoldWT

1975 Linkage of six genes in Chlamydomonas reinhardtii and the construction of linkage test strains. J Bacteriol 124 1615 1617

26. WoolleyD

1945 Production of nicotinic acid deficiency with 3-acetylpyridine, the ketone analogue of nicotinic acid. J Biol Chem 157 455

27. WoolleyD

1946 Reversal by tryptophane of the biological effects of 3-acetylpyridine. J Biol Chem 162 179

28. KatohA

UenoharaK

AkitaM

HashimotoT

2006 Early steps in the biosynthesis of NAD in Arabidopsis start with aspartate and occur in the plastid. Plant Physiol 141 851 857

29. SchippersJHM

Nunes-NesiA

ApetreiR

HilleJ

FernieAR

2008 The Arabidopsis onset of leaf death5 mutation of quinolinate synthase affects nicotinamide adenine dinucleotide biosynthesis and causes early ageing. Plant Cell 20 2909 2925

30. PazourGJ

KoutoulisA

BenashskiSE

DickertBL

ShengH

1999 LC2, the Chlamydomonas homologue of the t complex-encoded protein Tctex2, is essential for outer dynein arm assembly. Mol Biol Cell 10 3507 3520

31. KathirP

LaVoieM

BrazeltonWJ

HaasNA

LefebvrePA

2003 Molecular map of the Chlamydomonas reinhardtii nuclear genome. Eukaryot Cell 2 362 379

32. LiuH

WoznicaK

CattonG

CrawfordA

BottingN

2007 Structural and kinetic characterization of quinolinate phosphoribosyltransferase (hQPRTase) from Homo sapiens. J Mol Biol 373 755 763

33. KwanAL

LiL

KulpDC

DutcherSK

StormoGD

2009 Improving gene-finding in Chlamydomonas reinhardtii: GreenGenie 2. BMC Genomics 10 e210

34. PerroneCA

MysterSH

BowerR

O'TooleET

PorterME

2000 Insights into the structural organization of the I1 inner arm dynein from a domain analysis of the 1-b dynein heavy chain. Mol Biol Cell 11 2297 2313

35. SizovaI

FuhrmannM

HegemannP

2001 A Streptomyces rimosus aphVIII gene coding for a new type phosphotransferase provides stable antibiotic resistance to Chlamydomonas reinhardtii. Gene 277 221 229

36. HarrisE

2009 The Chlamydomonas Sourcebook; Second Edition Academic Press

37. RaffaelliN

LorenziT

MarianiPL

EmanuelliM

AmiciA

1999 The Escherichia coli NadR regulator is endowed with nicotinamide mononucleotide adenylyltransferase activity. J Bacteriol 181 5509 5511

38. GroseJH

BergthorssonU

RothJR

2005 Regulation of NAD synthesis by the trifunctional NadR protein of Salmonella enterica. J Bacteriol 187 2774 2782

39. NakahataY

SaharS

AstaritaG

KaluzovaM

Sassone-CorsiP

2009 Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1. Science 324 654 657

40. TissenbaumH

GuarenteL

2001 Increased dosage of a sir-2 gene extends lifespan in Caenorhabditis elegans. Nature 410 227 230

41. LinS

DefossezP

GuarenteL

2000 Requirement of NAD and SIR2 for life-span extension by calorie restriction in Saccharomyces cerevisiae. Science 289 2126

42. HuangL

SunQ

QinF

LiC

ZhaoY

2007 Down-regulation of a SILENT INFORMATION REGULATOR2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice. Plant Physiol 144 1508

43. DutcherSK

TrabucoEC

1998 The UNI3 gene is required for assembly of basal bodies of Chlamydomonas and encodes delta-tubulin, a new member of the tubulin superfamily. Mol Biol Cell 9 1293 1308

44. ZhangQ

WangS-Y

FleurielC

LeprinceD

RocheleauJV

2007 Metabolic regulation of SIRT1 transcription via a HIC1:CtBP corepressor complex. Proc Natl Acad Sci U S A 104 829 833

45. FragaMF

EstellerM

2007 Epigenetics and aging: the targets and the marks. Trends Genet 23 413 418

46. YangH

YangT

BaurJA

PerezE

MatsuiT

2007 Nutrient-sensitive mitochondrial NAD+ levels dictate cell survival. Cell 130 1095 1107

47. ZhaiRG

ZhangF

HiesingerPR

CaoY

HaueterCM

2008 NAD synthase NMNAT acts as a chaperone to protect against neurodegeneration. Nature 452 887 891

48. RutterJ

ReickM

WuLC

McKnightSL

2001 Regulation of clock and NPAS2 DNA binding by the redox state of NAD cofactors. Science 293 510 514

49. VanderauweraS

De BlockM

Van de SteeneN

van de CotteB

MetzlaffM

2007 Silencing of poly(ADP-ribose) polymerase in plants alters abiotic stress signal transduction. Proc Natl Acad Sci U S A 104 15150 15155

50. van der VeerE

HoC

O'NeilC

BarbosaN

ScottR

2007 Extension of human cell lifespan by nicotinamide phosphoribosyltransferase. J Biol Chem 282 10841 10845

51. VaqueroA

SternglanzR

ReinbergD

2007 NAD+-dependent deacetylation of H4 lysine 16 by class III HDACs. Oncogene 26 5505 5520

52. KohanskiMA

DwyerDJ

HayeteB

LawrenceCA

CollinsJJ

2007 A common mechanism of cellular death induced by bactericidal antibiotics. Cell 130 797 810

53. RongvauxA

AndrisF

Van GoolF

LeoO

2003 Reconstructing eukaryotic NAD metabolism. Bioessays 25 683 690

54. KurnasovO

GoralV

ColabroyK

GerdesS

AnanthaS

2003 NAD biosynthesis identification of the tryptophan to quinolinate pathway in bacteria. Chem Biol 10 1195 1204

55. KobayashiK

EhrlichS

AlbertiniA

AmatiG

AndersenK

2003 Essential Bacillus subtilis genes. Proc Natl Acad Sci U S A 100 4678 4683

56. ImaiS

2009 Nicotinamide phosphoribosyltransferase (Nampt): a link between NAD biology, metabolism, and diseases. Current Pharmaceutical Design 15 20 28

57. HashidaSN

TakahashiH

Kawai-YamadaM

UchimiyaH

2007 Arabidopsis thaliana nicotinate/nicotinamide mononucleotide adenyltransferase (AtNMNAT) is required for pollen tube growth. Plant J 49 694 703

58. RevolloJR

KörnerA

MillsKF

SatohA

WangT

2007 Nampt/PBEF/Visfatin regulates insulin secretion in [beta] cells as a systemic NAD biosynthetic enzyme. Cell Metab 6 363 375

59. ShinDH

OganesyaN

JancarikJ

YokotaH

KimR

KimSH

2005 Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum. J Biol Chem 280 18326 18335

60. ChappieJS

CànavesJM

HanGW

RifeCL

XuQ

2005 The Structure of a Eukaryotic Nicotinic Acid Phosphoribosyltransferase Reveals Structural Heterogeneity among Type II PRTases. Structure 13 1385 1396

61. KirkDL

1998 Volvox: A Search for the Molecular and Genetic Origins of Multicellularity and Cellular Differentiation Cambridge University Press 399

62. PalenikB

GrimwoodJ

AertsA

RouzeP

SalamovA

2007 The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A 104 7705 7710

63. DerelleE

FerrazC

RombautsS

RouzeP

WordenAZ

2006 Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci U S A 103 11647 11652

64. PeersG

NiyogiKK

2008 Pond scum genomics: the genomes of Chlamydomonas and Ostreococcus. Plant Cell 20 502 507

65. KingN

WestbrookMJ

YoungSL

KuoA

AbedinM

2008 The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature 451 783 788

66. SmallI

PeetersN

LegeaiF

LurinC

2004 Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics 4 1581 1590

67. EmanuelssonO

NielsenH

BrunakS

von HeijneG

2000 Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300 1005 1016

68. GaravagliaS

D'AngeloI

EmanuelliM

CarnevaliF

PierellaF

2002 Structure of human NMN adenylytransferase. A key nuclear enzyme for NAD homeostasis. J. Biol Chem 8 8524 8530

69. ZhaiRG

CaoY

HiesingerPR

ZhouY

MehtaSQ

2006 Drosophila NMNAT maintains neural integrity independent of its NAD synthesis activity. PLoS Biol 4 e416

70. NakamuraK

GowansCS

1965 Genetic control of nicotinic acid metabolism in Chlamydomonas eugametos. Genetics 51 931 935

71. BieganowskiP

BrennerC

2004 Discoveries of nicotinamide riboside as a nutrient and conserved NRK genes establish a Preiss-Handler independent route to NAD+ in fungi and humans. Cell 117 495 502

72. BelenkyP

RacetteFG

BoganKL

McClureJM

SmithJS

2007 Nicotinamide riboside promotes Sir2 silencing and extends lifespan via Nrk and Urh1/Pnp1/Meu1 pathways to NAD+. Cell 129 473 484

73. BelenkyP

ChristensenKC

GazzanigaF

PletnevAA

BrennerC

2009 Nicotinamide riboside and nicotinic acid riboside salvage in fungi and mammals: Quantitative basis for Urh1 and purine nucleoside phosphorylase function in NAD+ metabolism. J Biol Chem 284 158 164

74. KaeberleinM

McVeyM

GuarenteL

1999 The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms. Genes Dev 13 2570

75. RoginaB

HelfandSL

2004 Sir2 mediates longevity in the fly through a pathway related to calorie restriction. Proc Natl Acad Sci USA 101 15998 16003

76. CohenH

MillerC

BittermanK

WallN

HekkingB

2004 Calorie restriction promotes mammalian cell survival by inducing the SIRT1 deacetylase. Science 305 390

77. SchulzTJ

ZarseK

VoigtA

UrbanN

BirringerM

2007 Glucose restriction extends Caenorhabditis elegans life span by inducing mitochondrial respiration and increasing oxidative stress. Cell Metab 6 280 293

78. ChengJ

TürkelN

HematiN

FullerMT

HuntAJ

2008 Centrosome misorientation reduces stem cell division during ageing. Nature 456 599 604

79. WangX

TsaiJW

ImaiJH

LianWN

ValleeRB

2009 Asymmetric centrosome inheritance maintains neural progenitors in the neocortex. Nature 461 947 955

80. AsherG

GatfieldD

StratmannM

ReinkeH

DibnerC

2008 SIRT1 regulates circadian clock gene expression through PER2 deacetylation. Cell 134 317 328

81. MatsuoT

OkamotoK

OnaiK

NiwaY

ShimogawaraK

2008 A systematic forward genetic analysis identified components of the Chlamydomonas circadian system. Genes Dev 22 918 930

82. LuxFG

DutcherSK

1991 Genetic interactions at the FLA10 locus: suppressors and synthetic phenotypes that affect the cell cycle and flagellar function in Chlamydomonas reinhardtii. Genetics 128 549 561

83. LarkinMA

BlackshieldsG

BrownNP

ChennaR

McGettiganPA

2007 Clustal W and Clustal X version 2.0. Bioinformatics 23 2947 2948

84. LinH

GoodenoughUW

2007 Gametogenesis in the Chlamydomonas reinhardtii minus mating type is controlled by two genes, MID and MTD1. Genetics 176 913 925

85. BarnesWM

1994 PCR amplification of up to 35 kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proc Natl Acad Sci 91 2216 2220

86. NewmanSM

BoyntonJE

GillhamNW

Randolph-AndersonBL

JohnsonAM

1990 Transformation of chloroplast ribosomal RNA genes in Chlamydomonas: molecular and genetic characterization of integration events. Genetics 126 875 888

87. IominiC

LiL

EsparzaJM

DutcherSK

2009 Retrograde IFT mutants identify complex A proteins with multiple genetic interactions in Chlamydomonas reinhardtii. Genetics 183 885 896

88. FangSC

De Los ReyesC

UmenJG

2006 Cell size checkpoint control by the retinoblastoma tumor suppressor pathway. PLoS Genet 2 e167

89. EngelkeDR

KrikosA

BruckME

GinsburgD

1990 Purification of Thermus aquaticus DNA polymerase expressed in Escherichia coli. Analytical Biochemistry 191 396 400

90. NelsonJA

SavereidePB

LefebvrePA

1994 The CRY1 gene in Chlamydomonas reinhardtii: structure and use as a dominant selectable marker for nuclear transformation. Mol Cell Biol 14 4011 4019

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