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Genome-Wide Meta-Analysis Identifies Regions on 7p21 () and 15q24 () As Determinants of Habitual Caffeine Consumption
We report the first genome-wide association study of habitual caffeine intake. We included 47,341 individuals of European descent based on five population-based studies within the United States. In a meta-analysis adjusted for age, sex, smoking, and eigenvectors of population variation, two loci achieved genome-wide significance: 7p21 (P = 2.4×10−19), near AHR, and 15q24 (P = 5.2×10−14), between CYP1A1 and CYP1A2. Both the AHR and CYP1A2 genes are biologically plausible candidates as CYP1A2 metabolizes caffeine and AHR regulates CYP1A2.
Vyšlo v časopise: Genome-Wide Meta-Analysis Identifies Regions on 7p21 () and 15q24 () As Determinants of Habitual Caffeine Consumption. PLoS Genet 7(4): e32767. doi:10.1371/journal.pgen.1002033
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002033Souhrn
We report the first genome-wide association study of habitual caffeine intake. We included 47,341 individuals of European descent based on five population-based studies within the United States. In a meta-analysis adjusted for age, sex, smoking, and eigenvectors of population variation, two loci achieved genome-wide significance: 7p21 (P = 2.4×10−19), near AHR, and 15q24 (P = 5.2×10−14), between CYP1A1 and CYP1A2. Both the AHR and CYP1A2 genes are biologically plausible candidates as CYP1A2 metabolizes caffeine and AHR regulates CYP1A2.
Zdroje
1. FraryCDJohnsonRKWangMQ 2005 Food sources and intakes of caffeine in the diets of persons in the United States. J Am Diet Assoc 105 110 113
2. FredholmBBBattigKHolmenJNehligAZvartauEE 1999 Actions of caffeine in the brain with special reference to factors that contribute to its widespread use. Pharmacol Rev 51 83 133
3. YangAPalmerAAde WitH 2010 Genetics of caffeine consumption and responses to caffeine. Psychopharmacology (Berl)
4. FerreS 2008 An update on the mechanisms of the psychostimulant effects of caffeine. J Neurochem 105 1067 1079
5. Tobacco and Genetics Consortium 2010 Genome-wide meta-analyses identify multiple loci associated with smoking behavior. Nat Genet 42 441 447
6. Jorge-NebertLFJiangZChakrabortyRWatsonJJinL 2010 Analysis of human CYP1A1 and CYP1A2 genes and their shared bidirectional promoter in eight world populations. Hum Mutat 31 27 40
7. UedaRIketakiHNagataKKimuraSGonzalezFJ 2006 A common regulatory region functions bidirectionally in transcriptional activation of the human CYP1A1 and CYP1A2 genes. Mol Pharmacol 69 1924 1930
8. DenisonMSNagySR 2003 Activation of the aryl hydrocarbon receptor by structurally diverse exogenous and endogenous chemicals. Annu Rev Pharmacol Toxicol 43 309 334
9. ZhouSFWangBYangLPLiuJP 2010 Structure, function, regulation and polymorphism and the clinical significance of human cytochrome P450 1A2. Drug Metab Rev 42 268 354
10. KotMDanielWA 2008 The relative contribution of human cytochrome P450 isoforms to the four caffeine oxidation pathways: an in vitro comparative study with cDNA-expressed P450s including CYP2C isoforms. Biochem Pharmacol 76 543 551
11. GunesADahlML 2008 Variation in CYP1A2 activity and its clinical implications: influence of environmental factors and genetic polymorphisms. Pharmacogenomics 9 625 637
12. CorcheroJPimpraleSKimuraSGonzalezFJ 2001 Organization of the CYP1A cluster on human chromosome 15: implications for gene regulation. Pharmacogenetics 11 1 6
13. HarperPAWongJYLamMSOkeyAB 2002 Polymorphisms in the human AH receptor. Chem Biol Interact 141 161 187
14. HuangZLQuWMEguchiNChenJFSchwarzschildMA 2005 Adenosine A2A, but not A1, receptors mediate the arousal effect of caffeine. Nat Neurosci 8 858 859
15. LedentCVaugeoisJMSchiffmannSNPedrazziniTEl YacoubiM 1997 Aggressiveness, hypoalgesia and high blood pressure in mice lacking the adenosine A2a receptor. Nature 388 674 678
16. RogersPJHohoffCHeatherleySVMullingsELMaxfieldPJ 2010 Association of the anxiogenic and alerting effects of caffeine with ADORA2A and ADORA1 polymorphisms and habitual level of caffeine consumption. Neuropsychopharmacology 35 1973 1983
17. CornelisMCEl-SohemyACamposH 2007 Genetic polymorphism of the adenosine A2A receptor is associated with habitual caffeine consumption. Am J Clin Nutr 86 240 244
18. LucianoMKirkKMHeathACMartinNG 2005 The genetics of tea and coffee drinking and preference for source of caffeine in a large community sample of Australian twins. Addiction 100 1510 1517
19. WillettWCSampsonLStampferMJRosnerBBainC 1985 Reproducibility and validity of a semiquantitative food frequency questionnaire. Am J Epidemiol 122 51 65
20. StevensJMetcalfPDennisBTellGShimakawaT 1996 Reliability of a food frequency questionnaire by ethnicity, gender, age and education. Nutrition Research 16 735 745
21. FeskanichDRimmEBGiovannucciELColditzGAStampferMJ 1993 Reproducibility and validity of food intake measurements from a semiquantitative food frequency questionnaire. J Am Diet Assoc 93 790 796
22. ParkJHWacholderSGailMHPetersUJacobsKB 2010 Estimation of effect size distribution from genome-wide association studies and implications for future discoveries. Nat Genet 42 570 575
23. HigdonJVFreiB 2006 Coffee and health: a review of recent human research. Crit Rev Food Sci Nutr 46 101 123
24. WillettWC 1998 Nutritional Epidemiology. New York Oxford University Press
25. RidkerPMChasmanDIZeeRYParkerARoseL 2008 Rationale, design, and methodology of the Women's Genome Health Study: a genome-wide association study of more than 25,000 initially healthy american women. Clin Chem 54 249 255
26. SubarAFThompsonFEKipnisVMidthuneDHurwitzP 2001 Comparative validation of the Block, Willett, and National Cancer Institute food frequency questionnaires: the Eating at America's Table Study. Am J Epidemiol 154 1089 1099
27. TippettKCypelY 1997 Design and Operation: The Continuing Survey of Food Intakes by Individuals and the Diet and Health Knowledge Survey, 1994-96. U.S. Department of Agriculture, Agricultural Research Service
28. SubarAFMidthuneDKulldorffMBrownCCThompsonFE 2000 Evaluation of alternative approaches to assign nutrient values to food groups in food frequency questionnaires. Am J Epidemiol 152 279 286
29. LiYAbecasisGR 2006 Mach 1.0: Rapid haplotype reconstruction and missing genotype inference. Am J Hum Genet S79 2290
30. MarchiniJHowieBMyersSMcVeanGDonnellyP 2007 A new multipoint method for genome-wide association studies by imputation of genotypes. Nat Genet 39 906 913
31. AulchenkoYSStruchalinMVvan DuijnCM 2010 ProbABEL package for genome-wide association analysis of imputed data. BMC Bioinformatics 11 134
32. PereiraTVPatsopoulosNASalantiGIoannidisJP 2009 Discovery properties of genome-wide association signals from cumulatively combined data sets. Am J Epidemiol 170 1197 1206
33. IoannidisJPPatsopoulosNAEvangelouE 2007 Heterogeneity in meta-analyses of genome-wide association investigations. PLoS ONE 2 e841 doi:10.1371/journal.pone.0000841
34. Pe'erIYelenskyRAltshulerDDalyMJ 2008 Estimation of the multiple testing burden for genomewide association studies of nearly all common variants. Genet Epidemiol 32 381 385
35. KanehisaMGotoS 2000 KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28 27 30
36. MeyerhofWBatramCKuhnCBrockhoffAChudobaE 2010 The molecular receptive ranges of human TAS2R bitter taste receptors. Chem Senses 35 157 170
37. LiuJZMcRaeAFNyholtDRMedlandSEWrayNR 2010 A versatile gene-based test for genome-wide association studies. Am J Hum Genet 87 139 145
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