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Genome Instability and Transcription Elongation Impairment in Human Cells Depleted of THO/TREX


THO/TREX connects transcription with genome integrity in yeast, but a role of mammalian THO in these processes is uncertain, which suggests a differential implication of mRNP biogenesis factors in genome integrity in yeast and humans. We show that human THO depletion impairs transcription elongation and mRNA export and increases instability associated with DNA breaks, leading to hyper-recombination and γH2AX and 53BP1 foci accumulation. This is accompanied by replication alteration as determined by DNA combing. Genome instability is R-loop–dependent, as deduced from the ability of the AID enzyme to increase DNA damage and of RNaseH to reduce it, or from the enhancement of R-loop–dependent class-switching caused by THOC1-depletion in CH12 murine cells. Therefore, mammalian THO prevents R-loop formation and has a role in genome dynamics and function consistent with an evolutionary conservation of the functional connection between these mRNP biogenesis factors and genome integrity that had not been anticipated.


Vyšlo v časopise: Genome Instability and Transcription Elongation Impairment in Human Cells Depleted of THO/TREX. PLoS Genet 7(12): e32767. doi:10.1371/journal.pgen.1002386
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002386

Souhrn

THO/TREX connects transcription with genome integrity in yeast, but a role of mammalian THO in these processes is uncertain, which suggests a differential implication of mRNP biogenesis factors in genome integrity in yeast and humans. We show that human THO depletion impairs transcription elongation and mRNA export and increases instability associated with DNA breaks, leading to hyper-recombination and γH2AX and 53BP1 foci accumulation. This is accompanied by replication alteration as determined by DNA combing. Genome instability is R-loop–dependent, as deduced from the ability of the AID enzyme to increase DNA damage and of RNaseH to reduce it, or from the enhancement of R-loop–dependent class-switching caused by THOC1-depletion in CH12 murine cells. Therefore, mammalian THO prevents R-loop formation and has a role in genome dynamics and function consistent with an evolutionary conservation of the functional connection between these mRNP biogenesis factors and genome integrity that had not been anticipated.


Zdroje

1. BentleyDL 2005 Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors. Curr Opin Cell Biol 17 251 256

2. LunaRGaillardHGonzalez-AguileraCAguileraA 2008 Biogenesis of mRNPs: integrating different processes in the eukaryotic nucleus. Chromosoma 117 319 331

3. ChavezSBeilharzTRondonAGErdjument-BromageHTempstP 2000 A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae. EMBO J 19 5824 5834

4. StrasserKMasudaSMasonPPfannstielJOppizziM 2002 TREX is a conserved complex coupling transcription with messenger RNA export. Nature 417 304 308

5. VoynovVVerstrepenKJJansenARunnerVMBuratowskiS 2006 Genes with internal repeats require the THO complex for transcription. Proc Natl Acad Sci U S A 103 14423 14428

6. RondonAGJimenoSGarcia-RubioMAguileraA 2003 Molecular evidence that the eukaryotic THO/TREX complex is required for efficient transcription elongation. J Biol Chem 278 39037 39043

7. MasonPBStruhlK 2005 Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo. Mol Cell 17 831 840

8. HuertasPAguileraA 2003 Cotranscriptionally formed DNA∶RNA hybrids mediate transcription elongation impairment and transcription-associated recombination. Mol Cell 12 711 721

9. Gomez-GonzalezBAguileraA 2007 Activation-induced cytidine deaminase action is strongly stimulated by mutations of the THO complex. Proc Natl Acad Sci USA 104 8409 8414

10. RondonAGJimenoSAguilera 2010 A The interface between transcription and mRNP export: from THO to THSC/TREX-2. Biochim Biophys Acta 1799 533 538

11. RehwinkelJHeroldAGariKKocherTRodeM 2004 Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster. Nat Struct Mol Biol 11 558 566

12. MasudaSDasRChengHHurtEDormanN 2005 Recruitment of the human TREX complex to mRNA during splicing. Genes Dev 19 1512 1517

13. ChengHDufuKLeeCSHsuJLDiasA 2006 Human mRNA export machinery recruited to the 5′ end of mRNA. Cell 127 1389 1400

14. KopytovaDVOrlovaAVKrasnovANGurskiyDYNikolenkoJV 2010 Multifunctional factor ENY2 is associated with the THO complex and promotes its recruitment onto nascent mRNA. Genes Dev 24 86 96

15. KohlerAHurtE 2007 Exporting RNA from the nucleus to the cytoplasm. Nat Rev Mol Cell Biol 8 761 773

16. GatfieldDIzaurraldeE 2002 REF1/Aly and the additional exon junction complex proteins are dispensable for nuclear mRNA export. J Cell Biol 159 579 588

17. GatfieldDLe HirHSchmittCBraunICKocherT 2001 The DExH/D box protein HEL/UAP56 is essential for mRNA nuclear export in Drosophila. Curr Biol 11 1716 1721

18. HeroldAKlymenkoTIzaurraldeE 2001 NXF1/p15 heterodimers are essential for mRNA nuclear export in Drosophila. RNA 7 1768 1780

19. FarnyNGHurtJASilverPA 2008 Definition of global and transcript-specific mRNA export pathways in metazoans. Genes Dev 22 66 78

20. KatahiraJInoueHHurtEYonedaY 2009 Adaptor Aly and co-adaptor Thoc5 function in the Tap-p15-mediated nuclear export of HSP70 mRNA. EMBO J 28 556 567

21. GuoSHakimiMABaillatDChenXFarberMJ 2005 Linking transcriptional elongation and messenger RNA export to metastatic breast cancers. Cancer Res 65 3011 3016

22. WangXChangYLiYZhangXGoodrichDW 2006 Thoc1/Hpr1/p84 is essential for early embryonic development in the mouse. Mol Cell Biol 26 4362 4367

23. LunaRJimenoSMarinMHuertasPGarcia-RubioM 2005 Interdependence between Transcription and mRNP Processing and Export, and Its Impact on Genetic Stability. Mol Cell 18 711 722

24. Gonzalez-AguileraCTousCGomez-GonzalezBHuertasPLunaR 2008 The THP1-SAC3-SUS1-CDC31 Complex Works in Transcription Elongation-mRNA Export Preventing RNA-Mediated Genome Instability. Mol Biol Cell

25. LiXManleyJL 2005 Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability. Cell 122 365 378

26. PaulsenRDSoniDVWollmanRHahnATYeeMC 2009 A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability. Mol Cell 35 228 239

27. AguileraA 2002 The connection between transcription and genomic instability. EMBO J 21 195 201

28. BanerjeeASammarcoMCDitchSWangJGrabczykE 2009 A novel tandem reporter quantifies RNA polymerase II termination in mammalian cells. PLoS ONE 4 e6193 doi:10.1371/journal.pone.0006193

29. RogakouEPPilchDROrrAHIvanovaVSBonnerWM 1998 DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139. J Biol Chem 273 5858 5868

30. RappoldIIwabuchiKDateTChenJ 2001 Tumor suppressor p53 binding protein 1 (53BP1) is involved in DNA damage-signaling pathways. J Cell Biol 153 613 620

31. LiYWangXZhangXGoodrichDW 2005 Human hHpr1/p84/Thoc1 regulates transcriptional elongation and physically links RNA polymerase II and RNA processing factors. Mol Cell Biol 25 4023 4033

32. LinSCoutinho-MansfieldGWangDPanditSFuXD 2008 The splicing factor SC35 has an active role in transcriptional elongation. Nat Struct Mol Biol 15 819 826

33. YuKChedinFHsiehCLWilsonTELieberMR 2003 R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells. Nat Immunol 4 442 451

34. MuramatsuMKinoshitaKFagarasanSYamadaSShinkaiY 2000 Class Switch Recombination and Hypermutation Require Activation-Induced Cytidine Deaminase (AID), a Potential RNA Editing Enzyme. Cell 102 553 563

35. NakamuraMKondoSSugaiMNazareaMImamuraS 1996 High frequency class switching of an lgM+ B lymphoma clone CH12F3 to lgA+ cells. Int Immunol 8 193 201

36. ReedRChengH 2005 TREX, SR proteins and export of mRNA. Curr Opin Cell Biol 17 269 273

37. DufuKLivingstoneMJSeebacherJGygiSPWilsonSA 2010 ATP is required for interactions between UAP56 and two conserved mRNA export proteins, Aly and CIP29, to assemble the TREX complex. Genes Dev 24 2043 2053

38. YohSMChoHPickleLEvansRMJonesKA 2007 The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export. Genes Dev 21 160 174

39. YohSMLucasJSJonesKA 2008 The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation. Genes Dev 22 3422 3434

40. BlobelG 1985 Gene gating: a hypothesis. Proc Natl Acad Sci U S A 82 8527 8529

41. CabalGGGenovesioARodriguez-NavarroSZimmerCGadalO 2006 SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope. Nature 441 770 773

42. AkhtarAGasserSM 2007 The nuclear envelope and transcriptional control. Nat Rev Genet 8 507 517

43. BrownCRSilverPA 2007 Transcriptional regulation at the nuclear pore complex. Curr Opin Genet Dev 17 100 106

44. LiXManleyJL 2006 Cotranscriptional processes and their influence on genome stability. Genes Dev 20 1838 1847

45. LiXNiuTManleyJL 2007 The RNA binding protein RNPS1 alleviates ASF/SF2 depletion-induced genomic instability. RNA 13 2108 2115

46. PavriRGazumyanAJankovicMDi VirgilioMKleinI 2010 Activation Induced Cytidine Deaminase Targets DNA at Sites of RNA Polymerase II Stalling by Interaction with Spt5. Cell 143 122 133

47. PradoFAguileraA 2005 Impairment of replication fork progression mediates RNA polII transcription-associated recombination. EMBO J 24 1267 1276

48. WellingerREPradoFAguileraA 2006 Replication fork progression is impaired by transcription in hyperrecombinant yeast cells lacking a functional THO complex. Mol Cell Biol 26 3327 3334

49. GottipatiPCasselTNSavolainenLHelledayT 2008 Transcription-associated recombination is dependent on replication in Mammalian cells. Mol Cell Biol 28 154 164

50. AzvolinskyAGiresiPGLiebJDZakianVA 2009 Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae. Mol Cell 34 722 734

51. AguileraAGomez-GonzalezB 2008 Genome instability: a mechanistic view of its causes and consequences. Nat Rev Genet 9 204 217

52. TuduriSCrabbeLContiCTourriereHHoltgreve-GrezH 2009 Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription. Nat Cell Biol 11 1315 1324

53. Gomez-GonzalezBFelipe-AbrioIAguileraA 2009 The S-phase checkpoint is required to respond to R-loops accumulated in THO mutants. Mol Cell Biol 29 5203 5213

54. VersiniGCometIWuMHoopesLSchwobE 2003 The yeast Sgs1 helicase is differentially required for genomic and ribosomal DNA replication. EMBO J 22 1939 1949

55. van de WeteringMOvingIMuncanVPon FongMTBrantjesH 2003 Specific inhibition of gene expression using a stably integrated, inducible small-interfering-RNA vector. EMBO Rep 4 609 615

56. ten AsbroekALvan GroenigenMNooijMBaasF 2002 The involvement of human ribonucleases H1 and H2 in the variation of response of cells to antisense phosphorothioate oligonucleotides. Eur J Biochem 269 583 592

57. BachlJCarlsonCGray-SchopferVDessingMOlssonC 2001 Increased transcription levels induce higher mutation rates in a hypermutating cell line. J Immunol 166 5051 5057

58. GongJTraganosFDarzynkiewiczZ 1994 A selective procedure for DNA extraction from apoptotic cells applicable for gel electrophoresis and flow cytometry. Anal Biochem 218 314 319

59. MichaletXEkongRFougerousseFRousseauxSSchurraC 1997 Dynamic molecular combing: stretching the whole human genome for high-resolution studies. Science 277 1518 1523

60. PaseroPBensimonASchwobE 2002 Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus. Genes Dev 16 2479 2484

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