-
Články
- Časopisy
- Kurzy
- Témy
- Kongresy
- Videa
- Podcasty
A Complex Genomic Rearrangement Involving the Locus Causes Dermal Hyperpigmentation in the Chicken
Dermal hyperpigmentation or Fibromelanosis (FM) is one of the few examples of skin pigmentation phenotypes in the chicken, where most other pigmentation variants influence feather color and patterning. The Silkie chicken is the most widespread and well-studied breed displaying this phenotype. The presence of the dominant FM allele results in extensive pigmentation of the dermal layer of skin and the majority of internal connective tissue. Here we identify the causal mutation of FM as an inverted duplication and junction of two genomic regions separated by more than 400 kb in wild-type individuals. One of these duplicated regions contains endothelin 3 (EDN3), a gene with a known role in promoting melanoblast proliferation. We show that EDN3 expression is increased in the developing Silkie embryo during the time in which melanoblasts are migrating, and elevated levels of expression are maintained in the adult skin tissue. We have examined four different chicken breeds from both Asia and Europe displaying dermal hyperpigmentation and conclude that the same structural variant underlies this phenotype in all chicken breeds. This complex genomic rearrangement causing a specific monogenic trait in the chicken illustrates how novel mutations with major phenotypic effects have been reused during breed formation in domestic animals.
Vyšlo v časopise: A Complex Genomic Rearrangement Involving the Locus Causes Dermal Hyperpigmentation in the Chicken. PLoS Genet 7(12): e32767. doi:10.1371/journal.pgen.1002412
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002412Souhrn
Dermal hyperpigmentation or Fibromelanosis (FM) is one of the few examples of skin pigmentation phenotypes in the chicken, where most other pigmentation variants influence feather color and patterning. The Silkie chicken is the most widespread and well-studied breed displaying this phenotype. The presence of the dominant FM allele results in extensive pigmentation of the dermal layer of skin and the majority of internal connective tissue. Here we identify the causal mutation of FM as an inverted duplication and junction of two genomic regions separated by more than 400 kb in wild-type individuals. One of these duplicated regions contains endothelin 3 (EDN3), a gene with a known role in promoting melanoblast proliferation. We show that EDN3 expression is increased in the developing Silkie embryo during the time in which melanoblasts are migrating, and elevated levels of expression are maintained in the adult skin tissue. We have examined four different chicken breeds from both Asia and Europe displaying dermal hyperpigmentation and conclude that the same structural variant underlies this phenotype in all chicken breeds. This complex genomic rearrangement causing a specific monogenic trait in the chicken illustrates how novel mutations with major phenotypic effects have been reused during breed formation in domestic animals.
Zdroje
1. HuttFB 1949 Genetics of the fowl New York McGraw-Hill xi 590
2. FaracoCDVazSAPastorMVEricksonCA 2001 Hyperpigmentation in the Silkie fowl correlates with abnormal migration of fate-restricted melanoblasts and loss of environmental barrier molecules. Dev Dyn 220 212 225
3. KuklenskiJ 1915 Uber das Vorkommen und die Verteilung des Pigmentes in den Organen und Geweben bei japanischen seiden Huhnern. Arch Micro Anat Entwickl 87 1 37
4. SmythJRJr 1990 Genetics of plumage, skin and eye pigmentation in chickens; CrawfordRD Amsterdam; New York Elsevier 109 167
5. MuroyaSTanabeRNakajimaIChikuniK 2000 Molecular characteristics and site specific distribution of the pigment of the silky fowl. J Vet Med Sci 62 391 395
6. DorshorstBOkimotoRAshwellC 2010 Genomic Regions Associated with Dermal Hyperpigmentation, Polydactyly and Other Morphological Traits in the Silkie Chicken. Journal of Heredity 101 339 350
7. LiSLuoX 2003 Compendium of materia medica: bencao gangmu Beijing Foreign Languages Press
8. AldrovandiULindLR 1963 Aldrovandi on chickens. The ornithology of Ulisse Aldrovandi, 1600, volume II, book xiv Norman Univ. of Oklahoma Press
9. HawSG 2006 Marco Polo's China : a Venetian in the realm of Khubilai Khan London; New York Routledge 214
10. BatesonWPunnettR 1911 The inheritance of the peculiar pigmentation of the silky fowl. Journal of Genetics 1 185 203
11. DunnLJullM 1927 On the inheritance of some characters of the silky fowl. Journal of Genetics 19 27 63
12. Le DouarinNMDupinE 2003 Multipotentiality of the neural crest. Curr Opin Genet Dev 13 529 536
13. HalletMMFerrandR 1984 Quail melanoblast migration in two breeds of fowl and in their hybrids: evidence for a dominant genic control of the mesodermal pigment cell pattern through the tissue environment. J Exp Zool 230 229 238
14. ConsortiumICGS 2004 Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432 695 716
15. ReichMLiefeldTGouldJLernerJTamayoP 2006 GenePattern 2.0. Nat Genet 38 500 501
16. OlshenABVenkatramanESLucitoRWiglerM 2004 Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5 557 572
17. DupinEGlavieuxCVaigotPLe DouarinNM 2000 Endothelin 3 induces the reversion of melanocytes to glia through a neural crest-derived glial-melanocytic progenitor. Proc Natl Acad Sci U S A 97 7882 7887
18. LahavRDupinELecoinLGlavieuxCChampevalD 1998 Endothelin 3 selectively promotes survival and proliferation of neural crest-derived glial and melanocytic precursors in vitro. Proc Natl Acad Sci U S A 95 14214 14219
19. LahavRZillerCDupinELe DouarinNM 1996 Endothelin 3 promotes neural crest cell proliferation and mediates a vast increase in melanocyte number in culture. Proc Natl Acad Sci U S A 93 3892 3897
20. SiepelABejeranoGPedersenJSHinrichsASHouM 2005 Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 15 1034 1050
21. NatafVLecoinLEichmannALe DouarinNM 1996 Endothelin-B receptor is expressed by neural crest cells in the avian embryo. Proc Natl Acad Sci U S A 93 9645 9650
22. LecoinLSakuraiTNgoMTAbeYYanagisawaM 1998 Cloning and characterization of a novel endothelin receptor subtype in the avian class. Proc Natl Acad Sci U S A 95 3024 3029
23. PlaPAlbertiCSolov'evaOPasdarMKunisadaT 2005 Ednrb2 orients cell migration towards the dorsolateral neural crest pathway and promotes melanocyte differentiation. Pigment Cell Res 18 181 187
24. OlivaresCSolanoF 2009 New insights into the active site structure and catalytic mechanism of tyrosinase and its related proteins. Pigment Cell Melanoma Res 22 750 760
25. ZhangFCarvalhoCMLupskiJR 2009 Complex human chromosomal and genomic rearrangements. Trends Genet 25 298 307
26. HastingsPJLupskiJRRosenbergSMIraG 2009 Mechanisms of change in gene copy number. Nat Rev Genet 10 551 564
27. ZhangFKhajaviMConnollyAMTowneCFBatishSD 2009 The DNA replication FoSTeS/MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans. Nat Genet 41 849 853
28. HastingsPJIraGLupskiJR 2009 A microhomology-mediated break-induced replication model for the origin of human copy number variation. PLoS Genet 5 e1000327 doi:10.1371/journal.pgen.1000327
29. BaileyJAYavorAMMassaHFTraskBJEichlerEE 2001 Segmental duplications: organization and impact within the current human genome project assembly. Genome Res 11 1005 1017
30. PielbergGOlssonCSyvanenACAnderssonL 2002 Unexpectedly high allelic diversity at the KIT locus causing dominant white color in the domestic pig. Genetics 160 305 311
31. LecoinLMercierPLe DouarinNM 1994 Growth of neural crest cells in vitro is enhanced by extracts from Silky Fowl embryonic tissues. Pigment Cell Res 7 210 216
32. AokiHYamadaYHaraAKunisadaT 2009 Two distinct types of mouse melanocyte: differential signaling requirement for the maintenance of non-cutaneous and dermal versus epidermal melanocytes. Development 136 2511 2521
33. GarciaRJIttahAMirabalSFigueroaJLopezL 2008 Endothelin 3 induces skin pigmentation in a keratin-driven inducible mouse model. J Invest Dermatol 128 131 142
34. ReedyMVFaracoCDEricksonCA 1998 Specification and migration of melanoblasts at the vagal level and in hyperpigmented Silkie chickens. Dev Dyn 213 476 485
35. HofstraRMOsingaJTan-SindhunataGWuYKamsteegEJ 1996 A homozygous mutation in the endothelin-3 gene associated with a combined Waardenburg type 2 and Hirschsprung phenotype (Shah-Waardenburg syndrome). Nat Genet 12 445 447
36. BaynashAGHosodaKGiaidARichardsonJAEmotoN 1994 Interaction of endothelin-3 with endothelin-B receptor is essential for development of epidermal melanocytes and enteric neurons. Cell 79 1277 1285
37. EricksonCAGoinsTL 1995 Avian neural crest cells can migrate in the dorsolateral path only if they are specified as melanocytes. Development 121 915 924
38. AdameykoILallemendFAquinoJBPereiraJATopilkoP 2009 Schwann cell precursors from nerve innervation are a cellular origin of melanocytes in skin. Cell 139 366 379
39. DupinERealCGlavieux-PardanaudCVaigotPLe DouarinNM 2003 Reversal of developmental restrictions in neural crest lineages: transition from Schwann cells to glial-melanocytic precursors in vitro. Proc Natl Acad Sci U S A 100 5229 5233
40. AokiHHaraAMotohashiTOsawaMKunisadaT 2011 Functionally distinct melanocyte populations revealed by reconstitution of hair follicles in mice. Pigment Cell Melanoma Res 24 125 135
41. GunnarssonUKerjeSBed'homBSahlqvistASEkwallO 2011 The Dark brown plumage color in chickens is caused by an 8.3-kb deletion upstream of SOX10. Pigment Cell Melanoma Res 24 268 274
42. WrightDBoijeHMeadowsJRSBed'homBGourichonD 2009 Copy Number Variation in Intron 1 of SOX5 Causes the Pea-comb Phenotype in Chickens. PLoS Genet 5 e1000512 doi:10.1371/journal.pgen.1000512
43. KerstensHHCrooijmansRPDibbitsBWVereijkenAOkimotoR 2011 Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries. BMC Genomics 12 94
44. RubinCJZodyMCErikssonJMeadowsJRSherwoodE 2010 Whole-genome resequencing reveals loci under selection during chicken domestication. Nature 464 587 591
45. NeelyRKDeenJHofkensJ 2011 Optical mapping of DNA: Single-molecule-based methods for mapping genomes. Biopolymers
46. GroenenMAMegensHJZareYWarrenWCHillierLW 2011 The development and characterization of a 60K SNP chip for chicken. BMC Genomics 12 274
47. PeifferDALeJMSteemersFJChangWJennigesT 2006 High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping. Genome Res 16 1136 1148
48. UntergasserANijveenHRaoXBisselingTGeurtsR 2007 Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res 35 W71 74
49. IshiiTSootomeHShanLYamashitaK 2007 Validation of universal conditions for duplex quantitative reverse transcription polymerase chain reaction assays. Anal Biochem 362 201 212
50. HamburgerVHamiltonHL 1992 A series of normal stages in the development of the chick embryo. 1951. Dev Dyn 195 231 272
Štítky
Genetika Reprodukčná medicína
Článek Genome Instability and Transcription Elongation Impairment in Human Cells Depleted of THO/TREXČlánek A Population Genetics-Phylogenetics Approach to Inferring Natural Selection in Coding SequencesČlánek Interspecific Sex in Grass Smuts and the Genetic Diversity of Their Pheromone-Receptor SystemČlánek Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types
Článok vyšiel v časopisePLOS Genetics
Najčítanejšie tento týždeň
2011 Číslo 12- Gynekologové a odborníci na reprodukční medicínu se sejdou na prvním virtuálním summitu
- Je „freeze-all“ pro všechny? Odborníci na fertilitu diskutovali na virtuálním summitu
-
Všetky články tohto čísla
- The Connection between Space and Thinking: An Interview with Rafael Viñoly
- An Assessment of the Individual and Collective Effects of Variants on Height Using Twins and a Developmentally Informative Study Design
- Widespread Cotranslational Formation of Protein Complexes
- Genomes Reveal Transition of Bacteria from Aquatic to Terrestrial Environments
- A Complex Genomic Rearrangement Involving the Locus Causes Dermal Hyperpigmentation in the Chicken
- Plasticity of BRCA2 Function in Homologous Recombination: Genetic Interactions of the PALB2 and DNA Binding Domains
- Transcription Is Required to Establish Maternal Imprinting at the Prader-Willi Syndrome and Angelman Syndrome Locus
- Substitutions in the Amino-Terminal Tail of Neurospora Histone H3 Have Varied Effects on DNA Methylation
- MAPK/ERK Signaling Regulates Insulin Sensitivity to Control Glucose Metabolism in
- A Comprehensive Analysis of Shared Loci between Systemic Lupus Erythematosus (SLE) and Sixteen Autoimmune Diseases Reveals Limited Genetic Overlap
- Genome Instability and Transcription Elongation Impairment in Human Cells Depleted of THO/TREX
- Genome-Wide Meta-Analysis of Five Asian Cohorts Identifies as a Susceptibility Locus for Corneal Astigmatism
- A Population Genetics-Phylogenetics Approach to Inferring Natural Selection in Coding Sequences
- HIF-1 Regulates Iron Homeostasis in by Activation and Inhibition of Genes Involved in Iron Uptake and Storage
- Ror2 Enhances Polarity and Directional Migration of Primordial Germ Cells
- DNA Methylation of the Gonadal Aromatase () Promoter Is Involved in Temperature-Dependent Sex Ratio Shifts in the European Sea Bass
- A Genetic Screening Strategy Identifies Novel Regulators of the Proteostasis Network
- Interspecific Sex in Grass Smuts and the Genetic Diversity of Their Pheromone-Receptor System
- The Synthetic Multivulva Genes Prevent Ras Pathway Activation by Tightly Repressing Global Ectopic Expression of EGF
- Mining the Allelic Spectrum Reveals the Contribution of Rare and Common Regulatory Variants to HDL Cholesterol
- Identification of a Genomic Reservoir for New Genes in Primate Genomes
- Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types
- Identification of Evolutionarily Conserved Exons as Regulated Targets for the Splicing Activator Tra2β in Development
- Acute Multiple Organ Failure in Adult Mice Deleted for the Developmental Regulator Wt1
- Age-Related Neuronal Degeneration: Complementary Roles of Nucleotide Excision Repair and Transcription-Coupled Repair in Preventing Neuropathology
- Target Site Recognition by a Diversity-Generating Retroelement
- Ancestral Components of Admixed Genomes in a Mexican Cohort
- Targeted Proteolysis of Plectin Isoform 1a Accounts for Hemidesmosome Dysfunction in Mice Mimicking the Dominant Skin Blistering Disease EBS-Ogna
- Autosomal Recessive Dilated Cardiomyopathy due to Mutations Results from Abnormal Dystroglycan O-Mannosylation
- SREBP Coordinates Iron and Ergosterol Homeostasis to Mediate Triazole Drug and Hypoxia Responses in the Human Fungal Pathogen
- The RNA Silencing Enzyme RNA Polymerase V Is Required for Plant Immunity
- An Anti-Checkpoint Activity for Rif1
- The FGFR4-G388R Polymorphism Promotes Mitochondrial STAT3 Serine Phosphorylation to Facilitate Pituitary Growth Hormone Cell Tumorigenesis
- Common Variants Show Predicted Polygenic Effects on Height in the Tails of the Distribution, Except in Extremely Short Individuals
- The Fission Yeast Stress-Responsive MAPK Pathway Promotes Meiosis via the Phosphorylation of Pol II CTD in Response to Environmental and Feedback Cues
- Integrating Genome-Wide Genetic Variations and Monocyte Expression Data Reveals -Regulated Gene Modules in Humans
- Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
- A Novel Checkpoint and RPA Inhibitory Pathway Regulated by Rif1
- Hierarchical Generalized Linear Models for Multiple Groups of Rare and Common Variants: Jointly Estimating Group and Individual-Variant Effects
- The Major Roles of DNA Polymerases Epsilon and Delta at the Eukaryotic Replication Fork Are Evolutionarily Conserved
- A High-Resolution Whole-Genome Map of Key Chromatin Modifications in the Adult
- A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures
- A Functional Phylogenomic View of the Seed Plants
- Histone H3K9 Trimethylase Eggless Controls Germline Stem Cell Maintenance and Differentiation
- Ribosomal Protein Mutants Control Tissue Growth Non-Autonomously via Effects on the Prothoracic Gland and Ecdysone
- , , and Are Required to Activate or Delimit the Spread of the Transcriptional Response to Epidermal Wounds in
- Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes
- Candidate Gene Screen in the Red Flour Beetle Reveals as Ancient Regulator of Anterior Median Head and Central Complex Development
- Charcot-Marie-Tooth–Linked Mutant GARS Is Toxic to Peripheral Neurons Independent of Wild-Type GARS Levels
- The RNA–Methyltransferase Misu (NSun2) Poises Epidermal Stem Cells to Differentiate
- PLOS Genetics
- Archív čísel
- Aktuálne číslo
- Informácie o časopise
Najčítanejšie v tomto čísle- Targeted Proteolysis of Plectin Isoform 1a Accounts for Hemidesmosome Dysfunction in Mice Mimicking the Dominant Skin Blistering Disease EBS-Ogna
- The RNA Silencing Enzyme RNA Polymerase V Is Required for Plant Immunity
- The FGFR4-G388R Polymorphism Promotes Mitochondrial STAT3 Serine Phosphorylation to Facilitate Pituitary Growth Hormone Cell Tumorigenesis
- Target Site Recognition by a Diversity-Generating Retroelement
Prihlásenie#ADS_BOTTOM_SCRIPTS#Zabudnuté hesloZadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.
- Časopisy