#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Targeted Changes of the Cell Wall Proteome Influence Ability to Form Single- and Multi-strain Biofilms


Candida albicans is the most prevalent human fungal pathogen. Its ability to cause disease relies, in part, on the formation of biofilms, a protective structure of highly adherent cells tolerant to antifungal agents and the host immune response. The biofilm is considered as a persistent root of infection, disseminating infectious cells to other locations. In this study, we performed large-scale phenotypic analyses aimed at identifying genes whose overexpression affects biofilm development in C. albicans. Our screen relied on a collection of 531 C. albicans strains, each conditionally overexpressing one given gene and carrying one specific molecular tag allowing the quantification of strain abundance in mixed-population experiments. Our results strikingly revealed the enrichment of strains overproducing poorly-characterized surface proteins called Pgas (Putative GPI-Anchored proteins), within a 531-strain-containing biofilm model. We show that these PGA genes differentially contribute to single-strain and multi-strain biofilm formation and are involved in specific stages of the biofilm developmental process. Taken together, our results reveal the importance of C. albicans cell surface proteins during biofilm formation and reflect the powerful use of strain barcoding in combination with gene overexpression to identify genes and/or pathways involved in processes pertaining to virulence of pathogenic microbes.


Vyšlo v časopise: Targeted Changes of the Cell Wall Proteome Influence Ability to Form Single- and Multi-strain Biofilms. PLoS Pathog 10(12): e32767. doi:10.1371/journal.ppat.1004542
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.ppat.1004542

Souhrn

Candida albicans is the most prevalent human fungal pathogen. Its ability to cause disease relies, in part, on the formation of biofilms, a protective structure of highly adherent cells tolerant to antifungal agents and the host immune response. The biofilm is considered as a persistent root of infection, disseminating infectious cells to other locations. In this study, we performed large-scale phenotypic analyses aimed at identifying genes whose overexpression affects biofilm development in C. albicans. Our screen relied on a collection of 531 C. albicans strains, each conditionally overexpressing one given gene and carrying one specific molecular tag allowing the quantification of strain abundance in mixed-population experiments. Our results strikingly revealed the enrichment of strains overproducing poorly-characterized surface proteins called Pgas (Putative GPI-Anchored proteins), within a 531-strain-containing biofilm model. We show that these PGA genes differentially contribute to single-strain and multi-strain biofilm formation and are involved in specific stages of the biofilm developmental process. Taken together, our results reveal the importance of C. albicans cell surface proteins during biofilm formation and reflect the powerful use of strain barcoding in combination with gene overexpression to identify genes and/or pathways involved in processes pertaining to virulence of pathogenic microbes.


Zdroje

1. CalderoneR, FonziW (2001) Virulence factors of Candida albicans. Trends Microbiol 9: 327–335.

2. Cuellar-CruzM, Lopez-RomeroE, Villagomez-CastroJC, Ruiz-BacaE (2012) Candida species: new insights into biofilm formation. Future Microbiol 7: 755–771.

3. FinkelJ, MitchellA (2011) Genetic control of Candida albicans biofilm development. Nature Rev Microbiol 9: 109–118.

4. HarriottM, NoverrM (2011) Importance of Candida-bacterial polymicrobial biofilms in disease. Trends Microbiol 19: 557–563.

5. MayerFL, WilsonD, HubeB (2013) Candida albicans pathogenicity mechanisms. Virulence 4: 119–128.

6. RamageG, RajendranR, SherryL, WilliamsC (2012) Fungal biofilm resistance. Int J Microbiol 2012: 528521.

7. MatheL, Van DijckP (2013) Recent insights into Candida albicans biofilm resistance mechanisms. Current Genet 59: 251–264.

8. BaillieG, DouglasL (1999) Role of dimorphism in the development of Candida albicans biofilms. J Med Microbiol 48: 671–679.

9. RamageG, VandeWalleK, López-RibotJ, WickesB (2002) The filamentation pathway controlled by the Efg1 regulator protein is required for normal biofilm formation and development in Candida albicans. FEMS Microbiol Lett 214: 95–100.

10. RichardM, NobileC, BrunoV, MitchellAP (2005) Candida albicans biofilm-defective mutants. Eukaryot Cell 4: 1493–1502.

11. BonhommeJ, d'EnfertC (2013) Candida albicans biofilms: building a heterogeneous, drug-tolerant environment. Curr Op Microbiol 16: 398–403.

12. NobileC, MitchellA (2005) Regulation of cell-surface genes and biofilm formation by the C. albicans transcription factor Bcr1p. Current Biol 15: 1150–1155.

13. NobileC, AndesD, NettJ, SmithF, YueF, et al. (2006) Critical role of Bcr1-dependent adhesins in C. albicans biofilm formation in vitro and in vivo. PLoS Path 2: e63.

14. NobileC, NettJ, AndesD, MitchellA (2006) Function of Candida albicans adhesin Hwp1 in biofilm formation. Eukaryot Cell 5: 1604–1610.

15. NobileC, SchneiderH, NettJ, SheppardD, FillerS, et al. (2008) Complementary adhesin function in C. albicans biofilm formation. Current Biol 18: 1017–1024.

16. PérezA, PedrósB, MurguiA, CasanovaM, López-RibotJ, et al. (2006) Biofilm formation by Candida albicans mutants for genes coding fungal proteins exhibiting the eight-cysteine-containing CFEM domain. FEMS Yeast Res 6: 1074–1084.

17. LiF, PalecekS (2003) EAP1, a Candida albicans gene involved in binding human epithelial cells. Eukaryot Cell 2: 1266–1273.

18. HashashR, YounesS, BahnanW, El KoussaJ, MaaloufK, et al. (2011) Characterisation of Pga1, a putative Candida albicans cell wall protein necessary for proper adhesion and biofilm formation. Mycoses 54: 491–500.

19. KapteynJ, HoyerL, HechtJ, MüllerW, AndelA, et al. (2000) The cell wall architecture of Candida albicans wild-type cells and cell wall-defective mutants. Mol Microbiol 35: 601–611.

20. GrangerB, FlennikenM, DavisD, MitchellA, CutlerJ (2005) Yeast wall protein 1 of Candida albicans. Microbiology 151: 1631–1644.

21. LaforetL, MorenoI, Sánchez-FresnedaR, Martínez-EsparzaM, MartínezJ, et al. (2011) Pga26 mediates filamentation and biofilm formation and is required for virulence in Candida albicans. FEMS Yeast Res 11: 389–397.

22. BonhommeJ, ChauvelM, GoyardS, RouxP, RossignolT, et al. (2011) Contribution of the glycolytic flux and hypoxia adaptation to efficient biofilm formation by Candida albicans. Mol Microbiol 80: 995–1013.

23. NobileC, NettJ, HerndayA, HomannO, DeneaultJ-S, et al. (2009) Biofilm matrix regulation by Candida albicans Zap1. PLoS Biol 7: e1000133.

24. TaffH, NettJ, ZarnowskiR, RossK, SanchezH, et al. (2012) A Candida biofilm-induced pathway for matrix glucan delivery: implications for drug resistance. PLoS Path 8: e1002848.

25. FinkelJ, XuW, HuangD, HillE, DesaiJ, et al. (2012) Portrait of Candida albicans adherence regulators. PLoS Path 8: e1002525.

26. PrelichG (2012) Gene overexpression: uses, mechanisms, and interpretation. Genetics 190: 841–854.

27. SopkoR, HuangD, PrestonN, ChuaG, PappB, et al. (2006) Mapping pathways and phenotypes by systematic gene overexpression. Mol Cell 21: 319–330.

28. ChuaG, MorrisQ, SopkoR, RobinsonM, RyanO, et al. (2006) Identifying transcription factor functions and targets by phenotypic activation. Proc Natl Acad Sci USA 103: 12045–12050.

29. FuY, LuoG, SpellbergB, EdwardsJ, IbrahimA (2008) Gene overexpression/suppression analysis of candidate virulence factors of Candida albicans. Eukaryot Cell 7: 483–492.

30. ChauvelM, NesseirA, CabralV, ZnaidiS, GoyardS, et al. (2012) A versatile overexpression strategy in the pathogenic yeast Candida albicans: Identification of regulators of morphogenesis and fitness. PloS One 7: e45912.

31. SahniN, YiS, DanielsKJ, HuangG, SrikanthaT, et al. (2010) Tec1 mediates the pheromone response of the white phenotype of Candida albicans: insights into the evolution of new signal transduction pathways. PLoS Biol 8: e1000363.

32. DuH, GuanG, XieJ, SunY, TongY, et al. (2012) Roles of Candida albicans Gat2, a GATA-type zinc finger transcription factor, in biofilm formation, filamentous growth and virulence. PloS One 7: e29707.

33. Ramirez-ZavalaB, WeylerM, GildorT, SchmauchC, KornitzerD, et al. (2013) Activation of the Cph1-Dependent MAP Kinase Signaling Pathway Induces White-Opaque Switching in Candida albicans. PLoS Path 9: e1003696.

34. NobileC, FoxE, NettJ, SorrellsT, MitrovichQ, et al. (2012) A recently evolved transcriptional network controls biofilm development in Candida albicans. Cell 148: 126–138.

35. SpieringMJ, MoranGP, ChauvelM, MaccallumDM, HigginsJ, et al. (2010) Comparative transcript profiling of Candida albicans and Candida dubliniensis identifies SFL2, a C. albicans gene required for virulence in a reconstituted epithelial infection model. Eukaryot Cell 9: 251–265.

36. ZnaidiS, NesseirA, ChauvelM, RossignolT, d'EnfertC (2013) A comprehensive functional portrait of two heat shock factor-type transcriptional regulators involved in Candida albicans morphogenesis and virulence. PLoS Path 9: e1003519.

37. SongW, WangH, ChenJ (2011) Candida albicans Sfl2, a temperature-induced transcriptional regulator, is required for virulence in a murine gastrointestinal infection model. FEMS Yeast Res 11: 209–222.

38. ArnaudMB, CostanzoMC, ShahP, SkrzypekMS, SherlockG (2009) Gene Ontology and the annotation of pathogen genomes: the case of Candida albicans. Trends Microbiol 17: 295–303.

39. InglisDO, SkrzypekMS, ArnaudMB, BinkleyJ, ShahP, et al. (2013) Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans. Eukaryot Cell 12: 101–108.

40. BoyleEI, WengS, GollubJ, JinH, BotsteinD, et al. (2004) GO: TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20: 3710–3715.

41. KlisFM, SosinskaGJ, de GrootPW, BrulS (2009) Covalently linked cell wall proteins of Candida albicans and their role in fitness and virulence. FEMS Yeast Res 9: 1013–1028.

42. Munro CA, Richard ML (2012) The cell wall: glycoproteins, remodeling, and regulation. In: Calderone RA, Clancy CJ, editors. Candida and candidiasis, 2nd edition. Washington DC: ASM Press. pp.197–223.

43. ZupancicML, FriemanM, SmithD, AlvarezRA, CummingsRD, et al. (2008) Glycan microarray analysis of Candida glabrata adhesin ligand specificity. Mol Microbiol 68: 547–559.

44. RichardML, PlaineA (2007) Comprehensive analysis of glycosylphosphatidylinositol-anchored proteins in Candida albicans. Eukaryot Cell 6: 119–133.

45. ButlerG, RasmussenMD, LinMF, SantosMA, SakthikumarS, et al. (2009) Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459: 657–662.

46. RomanE, CottierF, ErnstJF, PlaJ (2009) Msb2 signaling mucin controls activation of Cek1 mitogen-activated protein kinase in Candida albicans. Eukaryot Cell 8: 1235–1249.

47. PuriS, KumarR, ChadhaS, TatiS, ContiHR, et al. (2012) Secreted aspartic protease cleavage of Candida albicans Msb2 activates Cek1 MAPK signaling affecting biofilm formation and oropharyngeal candidiasis. PloS One 7: e46020.

48. MuhlschlegelFA, FonziWA (1997) PHR2 of Candida albicans encodes a functional homolog of the pH-regulated gene PHR1 with an inverted pattern of pH-dependent expression. Mol Cell Biol 17: 5960–5967.

49. Moreno-RuizE, OrtuG, de GrootP, CottierF, LoussertC, et al. (2009) The GPI-modified proteins Pga59 and Pga62 of Candida albicans are required for cell wall integrity. Microbiology 155: 2004–2020.

50. García-SánchezS, AubertS, IraquiI, JanbonG, GhigoJ-M, et al. (2004) Candida albicans biofilms: a developmental state associated with specific and stable gene expression patterns. Eukaryot Cell 3: 536–545.

51. NettJE, LepakAJ, MarchilloK, AndesDR (2009) Time course global gene expression analysis of an in vivo Candida biofilm. J Infect Dis 200: 307–313.

52. YeaterKM, ChandraJ, ChengG, MukherjeePK, ZhaoX, et al. (2007) Temporal analysis of Candida albicans gene expression during biofilm development. Microbiology 153: 2373–2385.

53. FukudaT, MatsumuraT, AtoM, HamasakiM, NishiuchiY, et al. (2013) Critical roles for lipomannan and lipoarabinomannan in cell wall integrity of mycobacteria and pathogenesis of tuberculosis. mBio 4: e00472–00412.

54. LiY, SuC, MaoX, CaoF, ChenJ (2007) Roles of Candida albicans Sfl1 in hyphal development. Eukaryot Cell 6: 2112–2121.

55. UppuluriP, ChaturvediAK, SrinivasanA, BanerjeeM, RamasubramaniamAK, et al. (2010) Dispersion as an important step in the Candida albicans biofilm developmental cycle. PLoS Path 6: e1000828.

56. UppuluriP, PierceC, ThomasD, BubeckS, SavilleS, et al. (2010) The transcriptional regulator Nrg1p controls Candida albicans biofilm formation and dispersion. Eukaryot Cell 9: 1531–1537.

57. ClearyIA, LazzellAL, MonteagudoC, ThomasDP, SavilleSP (2012) BRG1 and NRG1 form a novel feedback circuit regulating Candida albicans hypha formation and virulence. Mol Microbiol 85: 557–573.

58. BassilanaM, BlythJ, ArkowitzRA (2003) Cdc24, the GDP-GTP exchange factor for Cdc42, is required for invasive hyphal growth of Candida albicans. Eukaryot Cell 2: 9–18.

59. DouglasAC, SmithAM, SharifpoorS, YanZ, DurbicT, et al. (2012) Functional analysis with a barcoder yeast gene overexpression system. G3 2: 1279–1289.

60. Legrand M, Munro CA, d'Enfert C (2011) Cool Tools 5: The Candida albicans ORFeome project. In: Calderone RA, Clancy CJ, editors. Candida and candidiasis, 2nd edition. Washington DC: ASM Press. pp.505–510.

61. CabralV, ChauvelM, FironA, LegrandM, NesseirA, et al. (2012) Modular gene over-expression strategies for Candida albicans. Methods Mol Biol 845: 227–244.

62. ParkY-N, MorschhäuserJ (2005) Tetracycline-inducible gene expression and gene deletion in Candida albicans. Eukaryot Cell 4: 1328–1342.

63. NobleS (2005) Strains and strategies for large-scale gene deletion studies of the diploid human fungal pathogen Candida albicans. Eukaryot Cell 4: 298–309.

64. FonziWA, IrwinMY (1993) Isogenic strain construction and gene mapping in Candida albicans. Genetics 134: 717–728.

65. WilsonRB, DavisD, MitchellAP (1999) Rapid hypothesis testing with Candida albicans through gene disruption with short homology regions. J Bacteriol 181: 1868–1874.

66. GolaS, MartinR, WaltherA, DunklerA, WendlandJ (2003) New modules for PCR-based gene targeting in Candida albicans: rapid and efficient gene targeting using 100 bp of flanking homology region. Yeast 20: 1339–1347.

67. MuradAM, LeePR, BroadbentID, BarelleCJ, BrownAJ (2000) CIp10, an efficient and convenient integrating vector for Candida albicans. Yeast 16: 325–327.

68. Rose MD, Winston F, Hieter P (1990) Methods in Yeast Genetics: A Laboratory Course Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.

69. HokampK, RocheFM, AcabM, RousseauME, KuoB, et al. (2004) ArrayPipe: a flexible processing pipeline for microarray data. Nucl Acids Res 32: W457–459.

70. EricsonE, HoonS, St OngeRP, GiaeverG, NislowC (2010) Exploring gene function and drug action using chemogenomic dosage assays. Methods Enzymol 470: 233–255.

71. St OngeRP, ManiR, OhJ, ProctorM, FungE, et al. (2007) Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions. Nature Genet 39: 199–206.

72. DagueE, JauvertE, LaplatineL, VialletB, ThibaultC, et al. (2011) Assembly of live micro-organisms on microstructured PDMS stamps by convective/capillary deposition for AFM bio-experiments. Nanotechnology 22: 395102.

73. HokampK, RocheFM, AcabM, RousseauME, KuoB, et al. (2004) ArrayPipe: a flexible processing pipeline for microarray data. Nucl Acids Res 32: W457–459.

74. MonniotC, BoisrameA, Da CostaG, ChauvelM, SautourM, et al. (2013) Rbt1 protein domains analysis in Candida albicans brings insights into hyphal surface modifications and Rbt1 potential role during adhesion and biofilm formation. PLoS One 8: e82395.

Štítky
Hygiena a epidemiológia Infekčné lekárstvo Laboratórium

Článok vyšiel v časopise

PLOS Pathogens


2014 Číslo 12
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Získaná hemofilie - Povědomí o nemoci a její diagnostika
nový kurz

Eozinofilní granulomatóza s polyangiitidou
Autori: doc. MUDr. Martina Doubková, Ph.D.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#