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Disturbed Local Auxin Homeostasis Enhances Cellular Anisotropy and Reveals Alternative Wiring of Auxin-ethylene Crosstalk in Seminal Roots
Observations gained from model organisms are essential, yet it remains unclear to which degree they are applicable to distant relatives. For example, in the dicotyledon Arabidopsis thaliana (Arabidopsis), auxin biosynthesis via indole-3-pyruvic acid (IPA) is essential for root development and requires redundant TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1 (TAA1) and TAA1-RELATED (TAR) genes. A promoter T-DNA insertion in the monocotyledon Brachypodium distachyon (Brachypodium) TAR2-LIKE gene (BdTAR2L) severely down-regulates expression, suggesting reduced tryptophan aminotransferase activity in this mutant, which thus represents a hypomorphic Bdtar2l allele (Bdtar2lhypo). Counterintuitive however, Bdtar2lhypo mutants display dramatically elongated seminal roots because of enhanced cell elongation. This phenotype is also observed in another, stronger Bdtar2l allele and can be mimicked by treating wild type with L-kynerunine, a specific TAA1/TAR inhibitor. Surprisingly, L-kynerunine-treated as well as Bdtar2l roots display elevated rather than reduced auxin levels. This does not appear to result from compensation by alternative auxin biosynthesis pathways. Rather, expression of YUCCA genes, which are rate-limiting for conversion of IPA to auxin, is increased in Bdtar2l mutants. Consistent with suppression of Bdtar2lhypo root phenotypes upon application of the ethylene precursor 1-aminocyclopropane-1-carboxylic-acid (ACC), BdYUCCA genes are down-regulated upon ACC treatment. Moreover, they are up-regulated in a downstream ethylene-signaling component homolog mutant, Bd ethylene insensitive 2-like 1, which also displays a Bdtar2l root phenotype. In summary, Bdtar2l phenotypes contrast with gradually reduced root growth and auxin levels described for Arabidopsis taa1/tar mutants. This could be explained if in Brachypodium, ethylene inhibits the rate-limiting step of auxin biosynthesis in an IPA-dependent manner to confer auxin levels that are sub-optimal for root cell elongation, as suggested by our observations. Thus, our results reveal a delicate homeostasis of local auxin and ethylene activity to control cell elongation in Brachypodium roots and suggest alternative wiring of auxin-ethylene crosstalk as compared to Arabidopsis.
Vyšlo v časopise: Disturbed Local Auxin Homeostasis Enhances Cellular Anisotropy and Reveals Alternative Wiring of Auxin-ethylene Crosstalk in Seminal Roots. PLoS Genet 9(6): e32767. doi:10.1371/journal.pgen.1003564
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1003564Souhrn
Observations gained from model organisms are essential, yet it remains unclear to which degree they are applicable to distant relatives. For example, in the dicotyledon Arabidopsis thaliana (Arabidopsis), auxin biosynthesis via indole-3-pyruvic acid (IPA) is essential for root development and requires redundant TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1 (TAA1) and TAA1-RELATED (TAR) genes. A promoter T-DNA insertion in the monocotyledon Brachypodium distachyon (Brachypodium) TAR2-LIKE gene (BdTAR2L) severely down-regulates expression, suggesting reduced tryptophan aminotransferase activity in this mutant, which thus represents a hypomorphic Bdtar2l allele (Bdtar2lhypo). Counterintuitive however, Bdtar2lhypo mutants display dramatically elongated seminal roots because of enhanced cell elongation. This phenotype is also observed in another, stronger Bdtar2l allele and can be mimicked by treating wild type with L-kynerunine, a specific TAA1/TAR inhibitor. Surprisingly, L-kynerunine-treated as well as Bdtar2l roots display elevated rather than reduced auxin levels. This does not appear to result from compensation by alternative auxin biosynthesis pathways. Rather, expression of YUCCA genes, which are rate-limiting for conversion of IPA to auxin, is increased in Bdtar2l mutants. Consistent with suppression of Bdtar2lhypo root phenotypes upon application of the ethylene precursor 1-aminocyclopropane-1-carboxylic-acid (ACC), BdYUCCA genes are down-regulated upon ACC treatment. Moreover, they are up-regulated in a downstream ethylene-signaling component homolog mutant, Bd ethylene insensitive 2-like 1, which also displays a Bdtar2l root phenotype. In summary, Bdtar2l phenotypes contrast with gradually reduced root growth and auxin levels described for Arabidopsis taa1/tar mutants. This could be explained if in Brachypodium, ethylene inhibits the rate-limiting step of auxin biosynthesis in an IPA-dependent manner to confer auxin levels that are sub-optimal for root cell elongation, as suggested by our observations. Thus, our results reveal a delicate homeostasis of local auxin and ethylene activity to control cell elongation in Brachypodium roots and suggest alternative wiring of auxin-ethylene crosstalk as compared to Arabidopsis.
Zdroje
1. LynchJ (1995) Root Architecture and Plant Productivity. Plant Physiol 109 : 7–13.
2. OsmontKS, SiboutR, HardtkeCS (2007) Hidden branches: developments in root system architecture. Annu Rev Plant Biol 58 : 93–113.
3. FitterA, WilliamsonL, LinkohrB, LeyserO (2002) Root system architecture determines fitness in an Arabidopsis mutant in competition for immobile phosphate ions but not for nitrate ions. Proc Biol Sci 269 : 2017–2022.
4. LinkohrBI, WilliamsonLC, FitterAH, LeyserHM (2002) Nitrate and phosphate availability and distribution have different effects on root system architecture of Arabidopsis. Plant J 29 : 751–760.
5. AikenRM, SmuckerAJ (1996) Root system regulation of whole plant growth. Annu Rev Phytopathol 34 : 325–346.
6. de DorlodotS, ForsterB, PagesL, PriceA, TuberosaR, et al. (2007) Root system architecture: opportunities and constraints for genetic improvement of crops. Trends Plant Sci 12 : 474–481.
7. BenfeyPN, BennettM, SchiefelbeinJ (2010) Getting to the root of plant biology: impact of the Arabidopsis genome sequence on root research. Plant J 61 : 992–1000.
8. HochholdingerF, TuberosaR (2009) Genetic and genomic dissection of maize root development and architecture. Curr Opin Plant Biol 12 : 172–177.
9. HochholdingerF, ZimmermannR (2008) Conserved and diverse mechanisms in root development. Curr Opin Plant Biol 11 : 70–74.
10. InukaiY, SakamotoT, Ueguchi-TanakaM, ShibataY, GomiK, et al. (2005) Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. Plant Cell 17 : 1387–1396.
11. LiuH, WangS, YuX, YuJ, HeX, et al. (2005) ARL1, a LOB-domain protein required for adventitious root formation in rice. Plant J 43 : 47–56.
12. HardtkeCS, BerlethT (1998) The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development. Embo J 17 : 1405–1411.
13. HardtkeCS, CkurshumovaW, VidaurreDP, SinghSA, StamatiouG, et al. (2004) Overlapping and non-redundant functions of the Arabidopsis auxin response factors MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4. Development 131 : 1089–1100.
14. DharmasiriN, DharmasiriS, WeijersD, LechnerE, YamadaM, et al. (2005) Plant development is regulated by a family of auxin receptor F box proteins. Dev Cell 9 : 109–119.
15. WonC, ShenX, MashiguchiK, ZhengZ, DaiX, et al. (2011) Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc Natl Acad Sci U S A 108 : 18518–18523.
16. StepanovaAN, Robertson-HoytJ, YunJ, BenaventeLM, XieDY, et al. (2008) TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development. Cell 133 : 177–191.
17. StepanovaAN, YunJ, RoblesLM, NovakO, HeW, et al. (2011) The Arabidopsis YUCCA1 flavin monooxygenase functions in the indole-3-pyruvic acid branch of auxin biosynthesis. Plant Cell 23 : 3961–3973.
18. ZhaoY, HullAK, GuptaNR, GossKA, AlonsoJ, et al. (2002) Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3. Genes Dev 16 : 3100–3112.
19. ZhaoY, ChristensenSK, FankhauserC, CashmanJR, CohenJD, et al. (2001) A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science 291 : 306–309.
20. TaoY, FerrerJL, LjungK, PojerF, HongF, et al. (2008) Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. Cell 133 : 164–176.
21. YamadaM, GreenhamK, PriggeMJ, JensenPJ, EstelleM (2009) The TRANSPORT INHIBITOR RESPONSE2 gene is required for auxin synthesis and diverse aspects of plant development. Plant Physiol 151 : 168–179.
22. GarrettJJ, MeentsMJ, BlackshawMT, BlackshawLC, HouH, et al. (2012) A novel, semi-dominant allele of MONOPTEROS provides insight into leaf initiation and vein pattern formation. Planta 236 : 297–312.
23. KroganNT, CkurshumovaW, MarcosD, CarageaAE, BerlethT (2012) Deletion of MP/ARF5 domains III and IV reveals a requirement for Aux/IAA regulation in Arabidopsis leaf vascular patterning. New Phytol 194 : 391–401.
24. SiboutR, SukumarP, HettiarachchiC, HolmM, MudayGK, et al. (2006) Opposite root growth phenotypes of hy5 versus hy5 hyh mutants correlate with increased constitutive auxin signaling. PLoS Genet 2: e202.
25. YinC, WuQ, ZengH, XiaK, XuJ, et al. (2011) Endogenous Auxin is Required but Supraoptimal for Rapid Growth of Rice (Oryza sativa L.) Seminal Roots, and Auxin Inhibition of Rice Seminal Root Growth is Not Caused by Ethylene. Journal of Plant Growth Regulation 30 : 20–29.
26. PhillipsKA, SkirpanAL, LiuX, ChristensenA, SlewinskiTL, et al. (2011) vanishing tassel2 encodes a grass-specific tryptophan aminotransferase required for vegetative and reproductive development in maize. Plant Cell 23 : 550–566.
27. TholeV, AlvesSC, WorlandB, BevanMW, VainP (2009) A protocol for efficiently retrieving and characterizing flanking sequence tags (FSTs) in Brachypodium distachyon T-DNA insertional mutants. Nat Protoc 4 : 650–661.
28. BraggJN, WuJ, GordonSP, GuttmanME, ThilmonyR, et al. (2012) Generation and characterization of the Western Regional Research Center Brachypodium T-DNA insertional mutant collection. PLoS One 7: e41916.
29. HeW, BrumosJ, LiH, JiY, KeM, et al. (2011) A small-molecule screen identifies L-kynurenine as a competitive inhibitor of TAA1/TAR activity in ethylene-directed auxin biosynthesis and root growth in Arabidopsis. Plant Cell 23 : 3944–3960.
30. Pacheco-VillalobosD, HardtkeCS (2012) Natural genetic variation of root system architecture from Arabidopsis to Brachypodium: towards adaptive value. Philos Trans R Soc Lond B Biol Sci 367 : 1552–1558.
31. ManoY, NemotoK (2012) The pathway of auxin biosynthesis in plants. J Exp Bot 63 : 2853–2872.
32. TakehisaH, SatoY, IgarashiM, AbikoT, AntonioBA, et al. (2012) Genome-wide transcriptome dissection of the rice root system: implications for developmental and physiological functions. Plant J 69 : 126–140.
33. MashiguchiK, TanakaK, SakaiT, SugawaraS, KawaideH, et al. (2011) The main auxin biosynthesis pathway in Arabidopsis. Proc Natl Acad Sci U S A 108 : 18512–18517.
34. LiangX, WangH, MaoL, HuY, DongT, et al. (2012) Involvement of COP1 in ethylene - and light-regulated hypocotyl elongation. Planta 236 : 1791–1802.
35. AdamsDO, YangSF (1979) Ethylene biosynthesis: Identification of 1-aminocyclopropane-1-carboxylic acid as an intermediate in the conversion of methionine to ethylene. Proc Natl Acad Sci U S A 76 : 170–174.
36. ClausenT, HuberR, MesserschmidtA, PohlenzHD, LaberB (1997) Slow-binding inhibition of Escherichia coli cystathionine beta-lyase by L-aminoethoxyvinylglycine: a kinetic and X-ray study. Biochemistry 36 : 12633–12643.
37. KrupkaHI, HuberR, HoltSC, ClausenT (2000) Crystal structure of cystalysin from Treponema denticola: a pyridoxal 5′-phosphate-dependent protein acting as a haemolytic enzyme. Embo J 19 : 3168–3178.
38. AlonsoJM, HirayamaT, RomanG, NourizadehS, EckerJR (1999) EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis. Science 284 : 2148–2152.
39. JuC, YoonGM, ShemanskyJM, LinDY, YingZI, et al. (2012) CTR1 phosphorylates the central regulator EIN2 to control ethylene hormone signaling from the ER membrane to the nucleus in Arabidopsis. Proc Natl Acad Sci U S A 109 : 19486–19491.
40. QiaoH, ShenZ, HuangSS, SchmitzRJ, UrichMA, et al. (2012) Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas. Science 338 : 390–393.
41. HochholdingerF, ParkWJ, SauerM, WollK (2004) From weeds to crops: genetic analysis of root development in cereals. Trends Plant Sci 9 : 42–48.
42. YamamotoY, KamiyaN, MorinakaY, MatsuokaM, SazukaT (2007) Auxin biosynthesis by the YUCCA genes in rice. Plant Physiol 143 : 1362–1371.
43. WooYM, ParkHJ, Su'udiM, YangJI, ParkJJ, et al. (2007) Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio. Plant Mol Biol 65 : 125–136.
44. ZhengZ, GuoY, NovakO, DaiX, ZhaoY, et al. (2013) Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1. Nat Chem Biol 9 : 244–246.
45. ScacchiE, SalinasP, GujasB, SantuariL, KroganN, et al. (2010) Spatio-temporal sequence of cross-regulatory events in root meristem growth. Proc Natl Acad Sci U S A 107 : 22734–22739.
46. SiboutR, PlantegenetS, HardtkeCS (2008) Flowering as a condition for xylem expansion in Arabidopsis hypocotyl and root. Curr Biol 18 : 458–463.
47. VogelJ, HillT (2008) High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3. Plant Cell Rep 27 : 471–478.
48. AlvesSC, WorlandB, TholeV, SnapeJW, BevanMW, et al. (2009) A protocol for Agrobacterium-mediated transformation of Brachypodium distachyon community standard line Bd21. Nat Protoc 4 : 638–649.
49. LangmeadB, SalzbergSL (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9 : 357–359.
50. AndersenSU, BuechelS, ZhaoZ, LjungK, NovakO, et al. (2008) Requirement of B2-type cyclin-dependent kinases for meristem integrity in Arabidopsis thaliana. Plant Cell 20 : 88–100.
51. ZhaoS, FernaldRD (2005) Comprehensive algorithm for quantitative real-time polymerase chain reaction. J Comput Biol 12 : 1047–1064.
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