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The RNA Export Factor, Nxt1, Is Required for Tissue Specific Transcriptional Regulation
The highly conserved, Nxf/Nxt (TAP/p15) RNA nuclear export pathway is important for export of most mRNAs from the nucleus, by interacting with mRNAs and promoting their passage through nuclear pores. Nxt1 is essential for viability; using a partial loss of function allele, we reveal a role for this gene in tissue specific transcription. We show that many Drosophila melanogaster testis-specific mRNAs require Nxt1 for their accumulation. The transcripts that require Nxt1 also depend on a testis-specific transcription complex, tMAC. We show that loss of Nxt1 leads to reduced transcription of tMAC targets. A reporter transcript from a tMAC-dependent promoter is under-expressed in Nxt1 mutants, however the same transcript accumulates in mutants if driven by a tMAC-independent promoter. Thus, in Drosophila primary spermatocytes, the transcription factor used to activate expression of a transcript, rather than the RNA sequence itself or the core transcription machinery, determines whether this expression requires Nxt1. We additionally find that transcripts from intron-less genes are more sensitive to loss of Nxt1 function than those from intron-containing genes and propose a mechanism in which transcript processing feeds back to increase activity of a tissue specific transcription complex.
Vyšlo v časopise: The RNA Export Factor, Nxt1, Is Required for Tissue Specific Transcriptional Regulation. PLoS Genet 9(6): e32767. doi:10.1371/journal.pgen.1003526
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1003526Souhrn
The highly conserved, Nxf/Nxt (TAP/p15) RNA nuclear export pathway is important for export of most mRNAs from the nucleus, by interacting with mRNAs and promoting their passage through nuclear pores. Nxt1 is essential for viability; using a partial loss of function allele, we reveal a role for this gene in tissue specific transcription. We show that many Drosophila melanogaster testis-specific mRNAs require Nxt1 for their accumulation. The transcripts that require Nxt1 also depend on a testis-specific transcription complex, tMAC. We show that loss of Nxt1 leads to reduced transcription of tMAC targets. A reporter transcript from a tMAC-dependent promoter is under-expressed in Nxt1 mutants, however the same transcript accumulates in mutants if driven by a tMAC-independent promoter. Thus, in Drosophila primary spermatocytes, the transcription factor used to activate expression of a transcript, rather than the RNA sequence itself or the core transcription machinery, determines whether this expression requires Nxt1. We additionally find that transcripts from intron-less genes are more sensitive to loss of Nxt1 function than those from intron-containing genes and propose a mechanism in which transcript processing feeds back to increase activity of a tissue specific transcription complex.
Zdroje
1. CarmodySR, WenteSR (2009) mRNA nuclear export at a glance. J Cell Sci 122 : 1933–1937.
2. ErkmannJA, KutayU (2004) Nuclear export of mRNA: from the site of transcription to the cytoplasm. Exp Cell Res 296 : 12–20.
3. JimenoW, RondónA, LunaR, AfuileraA (2002) The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability. EMBO J 21 : 3526–3535.
4. SträsserK, MasudaS, MasonP, PfannstielJ, OppizziM, et al. (2002) TREX is a conserved complex coupling transcription with messenger RNA export. Nature 417 : 304–308.
5. Le HirH, GatfieldD, IzaurraldeE, MooreM (2001) The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. EMBO J 20 : 4987–4997.
6. ZhouZ, LuoM, StraesserK, KatahiraJ, HurtE, et al. (2000) The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans. Nature 407 : 401–405.
7. SträsserK, HurtE (2000) Yra1p, a conserved nuclear RNA-binding protein, interacts directly with Mex67p and is required for mRNA export. EMBO J 19 : 410–420.
8. AbruzziK, LacadieS, RosbashM (2004) Biochemical analysis of TREX complex recruitment to intronless and intron-containing yeast genes. EMBO J 23 : 2620–2631.
9. WatanabeM, FukudaM, YoshidaM, YanagidaM, NishidaE (1999) Involvement of CRM1, a nuclear export receptor, in mRNA export in mammalian cells and fission yeast. Genes Cells 4 : 291–297.
10. AndrewsJ, BouffardGG, CheadleC, LuJN, BeckerKG, et al. (2000) Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis. Genome Research 10 : 2030–2043.
11. ChintapalliV, WangJ, DowJ (2007) Using FlyAtlas to identify better Drosophila models of human disease. Nat Genet 39 : 715–720.
12. OlivieriG, OlivieriA (1965) Autoradiographic study of nucleic acid synthesis during spermatogenesis in Drosophila melanogaster. Mutat Res 2 : 366–380.
13. ZhaoJ, KlyneG, BensonE, GudmannsdottirE, White-CooperH, et al. (2010) FlyTED: the Drosophila testis gene expression database. Nucleic Acids Research 38: D710–715.
14. SchäferM, NayerniaK, EngelW, SchäferU (1995) Translational control in spermatogenesis. Developmental Biology 172 : 344–352.
15. White-CooperH (2010) Molecular mechanisms of gene regulation during Drosophila spermatogenesis. Reproduction 139 : 11–21.
16. DoggettK, JiangJ, AletiG, White-CooperH (2011) Wake-up-call, a lin-52 paralogue, and Always early, a lin-9 homologue physically interact, but have opposing functions in regulating testis-specific gene expression. Dev Biol 355 : 381–393.
17. White-CooperH, SchaferMA, AlpheyLS, FullerMT (1998) Transcriptional and post-transcriptional control mechanisms coordinate the onset of spermatid differentiation with meiosis I in Drosophila. Development 125 : 125–134.
18. BeallEL, LewisPW, BellM, RochaM, JonesDL, et al. (2007) Discovery of tMAC: a Drosophila testis-specific meiotic arrest complex paralogous to Myb-MuvB. Genes & Development 21 : 904–919.
19. WangZ, MannRS (2003) Requirement for two nearly identical TGIF-related homeobox genes in Drosophila spermatogensis. Development 130 : 2853–2865.
20. AyyarS, JiangJ, ColluA, White-CooperH, WhiteR (2003) Drosophila TGIF is essential for developmentally regulated transcription in spermatogenesis. Development 130 : 2841–2852.
21. JiangJ, BensonE, BausekN, DoggettK, White-CooperH (2007) Tombola, a tesmin/TSO1 family protein, regulates transcriptional activation in the Drosophila male germline and physically interacts with Always early. Development 134 : 1549–1559.
22. JiangJ, White-CooperH (2003) Transcriptional activation in Drosophila spermatogenesis involves the mutually dependent function of aly and a novel meiotic arrest gene cookie monster. Development 130 : 563–573.
23. PerezgazgaL, JiangJ, BolivalB, HillerMA, BensonE, et al. (2004) Regulation of transcription of meiotic cell cycle and terminal differentiation genes by the testis-specific Zn finger protein matotopetli. Development 131 : 1691–1702.
24. White-CooperH, LeroyD, MacQueenA, FullerMT (2000) Transcription of meiotic cell cycle and terminal differentiation genes depends on a conserved chromatin associated protein, whose nuclear localisation is regulated. Development 127 : 5463–5473.
25. ChenX, HillerMA, SancakY, FullerMT (2005) Tissue-specific TAFs counteract Polycomb to turn on terminal differentiation. Science 310 : 869–872.
26. HillerMA, ChenX, PringleMJ, SuchorolskiM, SancakY, et al. (2004) Testis-specific TAF homologs collaborate to control a tissue-specific transcription program. Development 131 : 5297–5308.
27. HillerMA, LinT-Y, WoodC, FullerMT (2001) Developmental regulation of transcription by a tissue-specific TAF homolog. Genes and Development 15 : 1021–1030.
28. MoonS, ChoB, MinS-H, LeeD, ChungYD (2011) The THO complex is required for nucleolar integrity in Drosophila spermatocytes. Development 138 : 3835–3845.
29. KoundakjianE, CowanD, HardyR, BeckerA (2004) The Zuker collection: a resource for the analysis of autosomal gene function in Drosophila melanogaster. Genetics 167 : 203–206.
30. HeroldA, KlymenkoT, IzaurraldeE (2001) NXF1/p15 heterodimers are essential for mRNA nuclear export in Drosophila. RNA 7 : 1768–1780.
31. FribourgS, BraunIC, IzaurraldeE, ContiE (2001) Structural basis for the recognition of a nucleoporin FG repeat by the NTF2-like domain of the TAP/p15 mRNA nuclear export factor. Molecular Cell 8 : 645–656.
32. HempelL, RathkeC, RajaS, Renkawitz-PohlR (2006) In Drosophila, don juan and don juan like encode proteins of the spermatid nucleus and the flagellum and both are regulated at the transriptional level by the TAFII80 cannonball while translational repressio is achieved by distinct elements. Developmental Dynamics 235 : 1053–1064.
33. KwonS, XiaoH, WuC, BadenhorstP (2009) Alternative splicing of NURF301 generates distinct NURF chromatin remodelling complexes with altered modified histone binding specificities. PLoS Genet 5: e1000574.
34. AtsapkinaA, GolubkovaE, KasatkinaV, AvanesyanE, IvankovaN, et al. (2010) Peculiarities of spermatogenesis in Drosophila melanogaster: role of main transport receptor of mRNA (Dm NXF1). Cell and Tissue Research 4 : 1–7.
35. HeroldA, TeixeiraL, IzaurraldeE (2003) Genome-wide analysis of nuclear mRNA export pathways in Drosophila. EMBO J 22 : 2472–2483.
36. WilkieGS, ZimyaninV, KirbyR, KoreyC, Francis-LangH, et al. (2001) Small bristles, the Drosophila ortholog of NXF1, is essential for mRNA export throughout development. RNA 7 : 1781–1792.
37. KatahiraJ (2012) mRNA export and the TREX complex. Biochimica et Biophysica Acta (BBA) 18119 : 507–513.
38. ManleyJ (2002) Nuclear coupling: RNA processing reaches back to transcription. Nature Structural Biology 9 : 790–791.
39. BregmanA, Avraham-KelbertM, BarkaiO, DuekL, GutermanA, et al. (2011) Promoter elements regulate cytoplasmic mRNA decay. Cell 147 : 1473–1483.
40. TrcekT, LarsonD, MoldónA, QueryC, SingerR (2011) Single-molecule mRNA decay measurements reveal promoter-regulated mRNA stability in yeast. Cell 147 : 1484–1497.
41. HeroldA, KlymenkoT, IzaurraldeE (2001) NXF1/p15 heterodimers are essential for mRNA nuclear export in Drosophila. RNA 7 : 1768–1780.
42. CullenB (2003) Nuclear mRNA export: insights from virology. Trends Biochem Sci 28 : 419–424.
43. GrüterP, TaberneroC, von KobbeC, SchmittC, SaavedraC, et al. (1998) TAP, the human homolog of Mex67p, mediates CTE-dependent RNA export from the nucleus. Mol Cel 1 : 649–659.
44. LeiH, DiasA, ReedR (2011) Export and stability of naturally intronless mRNAs require specific coding region sequences and the TREX mRNA export complex. Proc Natl Acad Sci U S A 108 : 17985–17990.
45. Le HirH, NottA, MooreM (2003) How introns influence and enhance eukaryotic gene expression. Trends Biochem Sci 28 : 215–220.
46. DaiH, YoshimatsuT, LongM (2006) Retrogene movement within - and between-chromosomes in the evolution of Drosophila genomes. Gene 385 : 96–102.
47. SorourianM, BetranE (2010) Turnover and lineage-specific broadening of the transcription start site in a testis-specific retrogene. Fly 4 : 3–11.
48. BaiY, CasolaC, BetranE (2008) Evolutionary origin of regulatory regions of retrogenes in Drosophila. BMC Genomics 9 : 241.
49. FletcherJ, BurtisK, HognessD, ThummelC (1995) The Drosophila E74 gene is required for metamorphosis and plays a role in the polytene chromosome puffing response to ecdysone. Development 121 : 1455–1465.
50. White-Cooper H (2004) Spermatogenesis: analysis of meiosis and morphogenesis. In: Henderson D, editor. Drosophila Cytogenetics Protocols. Totowa, New Jersey: Humana Press. pp. 45–75.
51. MorrisC, BensonE, White-CooperH (2009) Determination of gene expression patterns using in situ hybridization to Drosophila testes. Nature Protocols 4 : 1807–1819.
52. ThummelC, BouletA, LipshitzHD (1988) Vectors for Drosophila P-element-mediated transformation and tissue culture transfection. Gene 74 : 445–456.
53. ParkerL, GrossS, AlpheyL (2001) Vectors for the expression of tagged proteins in Drosophila. Biotechniques 31 : 1280–1286.
54. DietzlG, ChenD, SchnorrerF, SuK, BarinovaY, et al. (2007) A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 448 : 151–156.
55. TweedieS, AshburnerM, FallsK, LeylandP, McQuiltonP, et al. (2009) FlyBase: enhancing Drosophila Gene Ontology annotations. Nucleic Acids Research 37: D555–D559.
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