-
Články
- Časopisy
- Kurzy
- Témy
- Kongresy
- Videa
- Podcasty
Fuzzy Tandem Repeats Containing p53 Response Elements May Define Species-Specific p53 Target Genes
Evolutionary forces that shape regulatory networks remain poorly understood. In mammals, the Rb pathway is a classic example of species-specific gene regulation, as a germline mutation in one Rb allele promotes retinoblastoma in humans, but not in mice. Here we show that p53 transactivates the Retinoblastoma-like 2 (Rbl2) gene to produce p130 in murine, but not human, cells. We found intronic fuzzy tandem repeats containing perfect p53 response elements to be important for this regulation. We next identified two other murine genes regulated by p53 via fuzzy tandem repeats: Ncoa1 and Klhl26. The repeats are poorly conserved in evolution, and the p53-dependent regulation of the murine genes is lost in humans. Our results indicate a role for the rapid evolution of tandem repeats in shaping differences in p53 regulatory networks between mammalian species.
Vyšlo v časopise: Fuzzy Tandem Repeats Containing p53 Response Elements May Define Species-Specific p53 Target Genes. PLoS Genet 8(6): e32767. doi:10.1371/journal.pgen.1002731
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002731Souhrn
Evolutionary forces that shape regulatory networks remain poorly understood. In mammals, the Rb pathway is a classic example of species-specific gene regulation, as a germline mutation in one Rb allele promotes retinoblastoma in humans, but not in mice. Here we show that p53 transactivates the Retinoblastoma-like 2 (Rbl2) gene to produce p130 in murine, but not human, cells. We found intronic fuzzy tandem repeats containing perfect p53 response elements to be important for this regulation. We next identified two other murine genes regulated by p53 via fuzzy tandem repeats: Ncoa1 and Klhl26. The repeats are poorly conserved in evolution, and the p53-dependent regulation of the murine genes is lost in humans. Our results indicate a role for the rapid evolution of tandem repeats in shaping differences in p53 regulatory networks between mammalian species.
Zdroje
1. KnudsonAGJr 1985 Hereditary cancer, oncogenes, and antioncogenes. Cancer Res 45 1437 1443
2. ClarkeARMaandagERvan RoonMvan der LugtNMvan der ValkM 1992 Requirement for a functional Rb-1 gene in murine development. Nature 359 328 330
3. JacksTFazeliASchmittEMBronsonRTGoodellMA 1992 Effects of an Rb mutation in the mouse. Nature 359 295 300
4. HuNGutsmannAHerbertDCBradleyALeeWH 1994 Heterozygous Rb-1 delta 20/+mice are predisposed to tumors of the pituitary gland with a nearly complete penetrance. Oncogene 9 1021 1027
5. Robanus-MaandagEDekkerMvan der ValkMCarrozzaMLJeannyJC 1998 p107 is a suppressor of retinoblastoma development in pRb-deficient mice. Genes Dev 12 1599 1609
6. ChenDLivne-barIVanderluitJLSlackRSAgochiyaM 2004 Cell-specific effects of RB or RB/p107 loss on retinal development implicate an intrinsically death-resistant cell-of-origin in retinoblastoma. Cancer Cell 5 539 551
7. MacPhersonDSageJKimTHoDMcLaughlinME 2004 Cell type-specific effects of Rb deletion in the murine retina. Genes Dev 18 1681 1694
8. ZhangJSchweersBDyerMA 2004 The first knockout mouse model of retinoblastoma. Cell Cycle 3 952 959
9. SageJMillerALPerez-ManceraPAWysockiJMJacksT 2003 Acute mutation of retinoblastoma gene function is sufficient for cell cycle re-entry. Nature 424 223 228
10. SpencerCPajovicSDevlinHDinhQDCorsonTW 2005 Distinct patterns of expression of the RB gene family in mouse and human retina. Gene Expr Patterns 5 687 694
11. DonovanSLSchweersBMartinsRJohnsonDDyerMA 2006 Compensation by tumor suppressor genes during retinal development in mice and humans. BMC Biol 4 14
12. AjiokaIMartinsRABayazitovITDonovanSJohnsonDA 2007 Differentiated horizontal interneurons clonally expand to form metastatic retinoblastoma in mice. Cell 131 378 390
13. DyerMARodriguez-GalindoCWilsonMW 2005 Use of preclinical models to improve treatment of retinoblastoma. PLoS Med 2 e332 doi:10.1371/journal.pmed.0020332
14. LaurieNADonovanSLShihCSZhangJMillsN 2006 Inactivation of the p53 pathway in retinoblastoma. Nature 444 61 66
15. VassilevLTVuBTGravesBCarvajalDPodlaskiF 2004 In vivo activation of the p53 pathway by small-molecule antagonists of MDM2. Science 303 844 848
16. el-DeiryWSKernSEPietenpolJAKinzlerKWVogelsteinB 1992 Definition of a consensus binding site for p53. Nat Genet 1 45 49
17. RileyTSontagEChenPLevineA 2008 Transcriptional control of human p53-regulated genes. Nat Rev Mol Cell Biol 9 402 412
18. MenendezDIngaAResnickMA 2009 The expanding universe of p53 targets. Nat Rev Cancer 9 724 737
19. SmeenkLvan HeeringenSJKoeppelMvan DrielMABartelsSJ 2008 Characterization of genome-wide p53-binding sites upon stress response. Nucleic Acids Res 36 3639 3654
20. BourdonJCDeguin-ChambonVLelongJCDessenPMayP 1997 Further characterisation of the p53 responsive element–identification of new candidate genes for trans-activation by p53. Oncogene 14 85 94
21. WangTZengJLoweCBSellersRGSalamaSR 2007 Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. Proc Natl Acad Sci U S A 104 18613 18618
22. BourqueGLeongBVegaVBChenXLeeYL 2008 Evolution of the mammalian transcription factor binding repertoire via transposable elements. Genome Res 18 1752 1762
23. ContenteADittmerAKochMCRothJDobbelsteinM 2002 A polymorphic microsatellite that mediates induction of PIG3 by p53. Nat Genet 30 315 320
24. KolpakovRBanaGKucherovG 2003 mreps: Efficient and flexible detection of tandem repeats in DNA. Nucleic Acids Res 31 3672 3678
25. KapicAHelmboldHReimerRKlotzscheODeppertW 2006 Cooperation between p53 and p130(Rb2) in induction of cellular senescence. Cell Death Differ 13 324 334
26. HelmboldHKommNDeppertWBohnW 2009 Rb2/p130 is the dominating pocket protein in the p53-p21 DNA damage response pathway leading to senescence. Oncogene 28 3456 3467
27. KunarsoGChiaNYJeyakaniJHwangCLuX 2010 Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet 42 631 634
28. MenendezDShatzMAzzamKGarantziotisSFesslerMB 2011 The Toll-like receptor gene family is integrated into human DNA damage and p53 networks. PLoS Genet 7 e1001360 doi:10.1371/journal.pgen.1001360
29. LeeKHLiMMichalowskiAMZhangXLiaoH 2010 A genomewide study identifies the Wnt signaling pathway as a major target of p53 in murine embryonic stem cells. Proc Natl Acad Sci U S A 107 69 74
30. HoVMSchafferBEKarnezisANParkKSSageJ 2009 The retinoblastoma gene Rb and its family member p130 suppress lung adenocarcinoma induced by oncogenic K-Ras. Oncogene 28 1393 1399
31. SchafferBEParkKSYiuGConklinJFLinC 2010 Loss of p130 accelerates tumor development in a mouse model for human small-cell lung carcinoma. Cancer Res 70 3877 3883
32. PellegriniMRendaMEVecchioA 2010 TRStalker: an efficient heuristic for finding fuzzy tandem repeats. Bioinformatics 26 i358 366
33. XuJWuRCO'MalleyBW 2009 Normal and cancer-related functions of the p160 steroid receptor co-activator (SRC) family. Nat Rev Cancer 9 615 630
34. StranskyNEgloffAMTwardADKosticADCibulskisK 2011 The mutational landscape of head and neck squamous cell carcinoma. Science 333 1157 1160
35. The Cancer Genome Atlas Research Network 2011 Integrated genomic analyses of ovarian carcinoma. Nature 474 609 615
36. LeMTShyh-ChangSLingKawSChinLTehC 2011 Conserved regulation of p53 network dosage by MicroRNA-125b occurs through evolving miRNA-target gene pairs. PLoS Genet 7 e1002242 doi:10.1371/journal.pgen.1002242
37. VincesMDLegendreMCaldaraMHagiharaMVerstrepenKJ 2009 Unstable tandem repeats in promoters confer transcriptional evolvability. Science 324 1213 1216
38. GemayelRVincesMDLegendreMVerstrepenKJ 2010 Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu Rev Genet 44 445 477
39. PostSMQuintas-CardamaAPantVIwakumaTHamirA 2010 A high-frequency regulatory polymorphism in the p53 pathway accelerates tumor development. Cancer Cell 18 220 230
40. HuWFengZTereskyAKLevineAJ 2007 p53 regulates maternal reproduction through LIF. Nature 450 721 724
41. RileyTYuXSontagELevineA 2009 The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes. BMC Bioinformatics 10 111
42. JaiswalASNarayanS 2001 p53-dependent transcriptional regulation of the APC promoter in colon cancer cells treated with DNA alkylating agents. J Biol Chem 276 18193 18199
Štítky
Genetika Reprodukčná medicína
Článek Uracil-Containing DNA in : Stability, Stage-Specific Accumulation, and Developmental InvolvementČlánek Preferential Genome Targeting of the CBP Co-Activator by Rel and Smad Proteins in Early EmbryosČlánek Protective Coupling of Mitochondrial Function and Protein Synthesis via the eIF2α Kinase GCN-2Článek Cohesin Proteins Promote Ribosomal RNA Production and Protein Translation in Yeast and Human CellsČlánek TERRA Promotes Telomere Shortening through Exonuclease 1–Mediated Resection of Chromosome EndsČlánek Attenuation of Notch and Hedgehog Signaling Is Required for Fate Specification in the Spinal CordČlánek Genome-Wide Functional Profiling Identifies Genes and Processes Important for Zinc-Limited Growth ofČlánek MicroRNA93 Regulates Proliferation and Differentiation of Normal and Malignant Breast Stem Cells
Článok vyšiel v časopisePLOS Genetics
Najčítanejšie tento týždeň
2012 Číslo 6- Gynekologové a odborníci na reprodukční medicínu se sejdou na prvním virtuálním summitu
- Je „freeze-all“ pro všechny? Odborníci na fertilitu diskutovali na virtuálním summitu
-
Všetky články tohto čísla
- Rumors of Its Disassembly Have Been Greatly Exaggerated: The Secret Life of the Synaptonemal Complex at the Centromeres
- Mimetic Butterflies Introgress to Impress
- Tipping the Balance in the Powerhouse of the Cell to “Protect” Colorectal Cancer
- Selection-Driven Gene Loss in Bacteria
- Decreased Mitochondrial DNA Mutagenesis in Human Colorectal Cancer
- Parallel Evolution of Auditory Genes for Echolocation in Bats and Toothed Whales
- Diverse CRISPRs Evolving in Human Microbiomes
- The Rad4 ATR-Activation Domain Functions in G1/S Phase in a Chromatin-Dependent Manner
- Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains
- Uracil-Containing DNA in : Stability, Stage-Specific Accumulation, and Developmental Involvement
- Fuzzy Tandem Repeats Containing p53 Response Elements May Define Species-Specific p53 Target Genes
- Adaptive Introgression across Species Boundaries in Butterflies
- G Protein Activation without a GEF in the Plant Kingdom
- Synaptonemal Complex Components Persist at Centromeres and Are Required for Homologous Centromere Pairing in Mouse Spermatocytes
- An Engineering Approach to Extending Lifespan in
- Incompatibility and Competitive Exclusion of Genomic Segments between Sibling Species
- Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in
- Patterns of Evolutionary Conservation of Essential Genes Correlate with Their Compensability
- Interplay between Synaptonemal Complex, Homologous Recombination, and Centromeres during Mammalian Meiosis
- Preferential Genome Targeting of the CBP Co-Activator by Rel and Smad Proteins in Early Embryos
- A Mouse Model of Acrodermatitis Enteropathica: Loss of Intestine Zinc Transporter ZIP4 (Slc39a4) Disrupts the Stem Cell Niche and Intestine Integrity
- Protective Coupling of Mitochondrial Function and Protein Synthesis via the eIF2α Kinase GCN-2
- Geographic Differences in Genetic Susceptibility to IgA Nephropathy: GWAS Replication Study and Geospatial Risk Analysis
- Cohesin Proteins Promote Ribosomal RNA Production and Protein Translation in Yeast and Human Cells
- TERRA Promotes Telomere Shortening through Exonuclease 1–Mediated Resection of Chromosome Ends
- Stimulation of Host Immune Defenses by a Small Molecule Protects from Bacterial Infection
- A Broad Requirement for TLS Polymerases η and κ, and Interacting Sumoylation and Nuclear Pore Proteins, in Lesion Bypass during Embryogenesis
- Genome-Wide Identification of Ampicillin Resistance Determinants in
- The CCR4-NOT Complex Is Implicated in the Viability of Aneuploid Yeasts
- Gustatory Perception and Fat Body Energy Metabolism Are Jointly Affected by Vitellogenin and Juvenile Hormone in Honey Bees
- Genetic Variants on Chromosome 1q41 Influence Ocular Axial Length and High Myopia
- Is a Key Regulator of Pancreaticobiliary Ductal System Development
- The NSL Complex Regulates Housekeeping Genes in
- Attenuation of Notch and Hedgehog Signaling Is Required for Fate Specification in the Spinal Cord
- Dual-Level Regulation of ACC Synthase Activity by MPK3/MPK6 Cascade and Its Downstream WRKY Transcription Factor during Ethylene Induction in Arabidopsis
- Genome-Wide Functional Profiling Identifies Genes and Processes Important for Zinc-Limited Growth of
- Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia
- MicroRNA93 Regulates Proliferation and Differentiation of Normal and Malignant Breast Stem Cells
- Phylogenomic Analysis Reveals Dynamic Evolutionary History of the Drosophila Heterochromatin Protein 1 (HP1) Gene Family
- Found: The Elusive ANTAR Transcription Antiterminator
- The Mutation in Chickens Constitutes a Structural Rearrangement Causing Both Altered Comb Morphology and Defective Sperm Motility
- Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases
- Polymorphisms in the Mitochondrial Ribosome Recycling Factor Compromise Cell Respiratory Function and Increase Atorvastatin Toxicity
- Gene Expression Profiles in Parkinson Disease Prefrontal Cortex Implicate and Genes under Its Transcriptional Regulation
- Global Regulatory Functions of the Endoribonuclease III in Gene Expression
- Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection
- The Regulatory Network of Natural Competence and Transformation of
- Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants
- Quantifying the Adaptive Potential of an Antibiotic Resistance Enzyme
- Divergence of the Yeast Transcription Factor Affects Sulfite Resistance
- The Histone Demethylase Jhdm1a Regulates Hepatic Gluconeogenesis
- RNA Methylation by the MIS Complex Regulates a Cell Fate Decision in Yeast
- Rare Copy Number Variants Observed in Hereditary Breast Cancer Cases Disrupt Genes in Estrogen Signaling and Tumor Suppression Network
- Genome-Wide Location Analysis Reveals Distinct Transcriptional Circuitry by Paralogous Regulators Foxa1 and Foxa2
- A Mutation Links a Canine Progressive Early-Onset Cerebellar Ataxia to the Endoplasmic Reticulum–Associated Protein Degradation (ERAD) Machinery
- The Mechanism for RNA Recognition by ANTAR Regulators of Gene Expression
- Limits to the Rate of Adaptive Substitution in Sexual Populations
- PLOS Genetics
- Archív čísel
- Aktuálne číslo
- Informácie o časopise
Najčítanejšie v tomto čísle- Rumors of Its Disassembly Have Been Greatly Exaggerated: The Secret Life of the Synaptonemal Complex at the Centromeres
- The NSL Complex Regulates Housekeeping Genes in
- Tipping the Balance in the Powerhouse of the Cell to “Protect” Colorectal Cancer
- Interplay between Synaptonemal Complex, Homologous Recombination, and Centromeres during Mammalian Meiosis
Prihlásenie#ADS_BOTTOM_SCRIPTS#Zabudnuté hesloZadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.
- Časopisy