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Fuzzy Tandem Repeats Containing p53 Response Elements May Define Species-Specific p53 Target Genes


Evolutionary forces that shape regulatory networks remain poorly understood. In mammals, the Rb pathway is a classic example of species-specific gene regulation, as a germline mutation in one Rb allele promotes retinoblastoma in humans, but not in mice. Here we show that p53 transactivates the Retinoblastoma-like 2 (Rbl2) gene to produce p130 in murine, but not human, cells. We found intronic fuzzy tandem repeats containing perfect p53 response elements to be important for this regulation. We next identified two other murine genes regulated by p53 via fuzzy tandem repeats: Ncoa1 and Klhl26. The repeats are poorly conserved in evolution, and the p53-dependent regulation of the murine genes is lost in humans. Our results indicate a role for the rapid evolution of tandem repeats in shaping differences in p53 regulatory networks between mammalian species.


Vyšlo v časopise: Fuzzy Tandem Repeats Containing p53 Response Elements May Define Species-Specific p53 Target Genes. PLoS Genet 8(6): e32767. doi:10.1371/journal.pgen.1002731
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002731

Souhrn

Evolutionary forces that shape regulatory networks remain poorly understood. In mammals, the Rb pathway is a classic example of species-specific gene regulation, as a germline mutation in one Rb allele promotes retinoblastoma in humans, but not in mice. Here we show that p53 transactivates the Retinoblastoma-like 2 (Rbl2) gene to produce p130 in murine, but not human, cells. We found intronic fuzzy tandem repeats containing perfect p53 response elements to be important for this regulation. We next identified two other murine genes regulated by p53 via fuzzy tandem repeats: Ncoa1 and Klhl26. The repeats are poorly conserved in evolution, and the p53-dependent regulation of the murine genes is lost in humans. Our results indicate a role for the rapid evolution of tandem repeats in shaping differences in p53 regulatory networks between mammalian species.


Zdroje

1. KnudsonAGJr 1985 Hereditary cancer, oncogenes, and antioncogenes. Cancer Res 45 1437 1443

2. ClarkeARMaandagERvan RoonMvan der LugtNMvan der ValkM 1992 Requirement for a functional Rb-1 gene in murine development. Nature 359 328 330

3. JacksTFazeliASchmittEMBronsonRTGoodellMA 1992 Effects of an Rb mutation in the mouse. Nature 359 295 300

4. HuNGutsmannAHerbertDCBradleyALeeWH 1994 Heterozygous Rb-1 delta 20/+mice are predisposed to tumors of the pituitary gland with a nearly complete penetrance. Oncogene 9 1021 1027

5. Robanus-MaandagEDekkerMvan der ValkMCarrozzaMLJeannyJC 1998 p107 is a suppressor of retinoblastoma development in pRb-deficient mice. Genes Dev 12 1599 1609

6. ChenDLivne-barIVanderluitJLSlackRSAgochiyaM 2004 Cell-specific effects of RB or RB/p107 loss on retinal development implicate an intrinsically death-resistant cell-of-origin in retinoblastoma. Cancer Cell 5 539 551

7. MacPhersonDSageJKimTHoDMcLaughlinME 2004 Cell type-specific effects of Rb deletion in the murine retina. Genes Dev 18 1681 1694

8. ZhangJSchweersBDyerMA 2004 The first knockout mouse model of retinoblastoma. Cell Cycle 3 952 959

9. SageJMillerALPerez-ManceraPAWysockiJMJacksT 2003 Acute mutation of retinoblastoma gene function is sufficient for cell cycle re-entry. Nature 424 223 228

10. SpencerCPajovicSDevlinHDinhQDCorsonTW 2005 Distinct patterns of expression of the RB gene family in mouse and human retina. Gene Expr Patterns 5 687 694

11. DonovanSLSchweersBMartinsRJohnsonDDyerMA 2006 Compensation by tumor suppressor genes during retinal development in mice and humans. BMC Biol 4 14

12. AjiokaIMartinsRABayazitovITDonovanSJohnsonDA 2007 Differentiated horizontal interneurons clonally expand to form metastatic retinoblastoma in mice. Cell 131 378 390

13. DyerMARodriguez-GalindoCWilsonMW 2005 Use of preclinical models to improve treatment of retinoblastoma. PLoS Med 2 e332 doi:10.1371/journal.pmed.0020332

14. LaurieNADonovanSLShihCSZhangJMillsN 2006 Inactivation of the p53 pathway in retinoblastoma. Nature 444 61 66

15. VassilevLTVuBTGravesBCarvajalDPodlaskiF 2004 In vivo activation of the p53 pathway by small-molecule antagonists of MDM2. Science 303 844 848

16. el-DeiryWSKernSEPietenpolJAKinzlerKWVogelsteinB 1992 Definition of a consensus binding site for p53. Nat Genet 1 45 49

17. RileyTSontagEChenPLevineA 2008 Transcriptional control of human p53-regulated genes. Nat Rev Mol Cell Biol 9 402 412

18. MenendezDIngaAResnickMA 2009 The expanding universe of p53 targets. Nat Rev Cancer 9 724 737

19. SmeenkLvan HeeringenSJKoeppelMvan DrielMABartelsSJ 2008 Characterization of genome-wide p53-binding sites upon stress response. Nucleic Acids Res 36 3639 3654

20. BourdonJCDeguin-ChambonVLelongJCDessenPMayP 1997 Further characterisation of the p53 responsive element–identification of new candidate genes for trans-activation by p53. Oncogene 14 85 94

21. WangTZengJLoweCBSellersRGSalamaSR 2007 Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. Proc Natl Acad Sci U S A 104 18613 18618

22. BourqueGLeongBVegaVBChenXLeeYL 2008 Evolution of the mammalian transcription factor binding repertoire via transposable elements. Genome Res 18 1752 1762

23. ContenteADittmerAKochMCRothJDobbelsteinM 2002 A polymorphic microsatellite that mediates induction of PIG3 by p53. Nat Genet 30 315 320

24. KolpakovRBanaGKucherovG 2003 mreps: Efficient and flexible detection of tandem repeats in DNA. Nucleic Acids Res 31 3672 3678

25. KapicAHelmboldHReimerRKlotzscheODeppertW 2006 Cooperation between p53 and p130(Rb2) in induction of cellular senescence. Cell Death Differ 13 324 334

26. HelmboldHKommNDeppertWBohnW 2009 Rb2/p130 is the dominating pocket protein in the p53-p21 DNA damage response pathway leading to senescence. Oncogene 28 3456 3467

27. KunarsoGChiaNYJeyakaniJHwangCLuX 2010 Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet 42 631 634

28. MenendezDShatzMAzzamKGarantziotisSFesslerMB 2011 The Toll-like receptor gene family is integrated into human DNA damage and p53 networks. PLoS Genet 7 e1001360 doi:10.1371/journal.pgen.1001360

29. LeeKHLiMMichalowskiAMZhangXLiaoH 2010 A genomewide study identifies the Wnt signaling pathway as a major target of p53 in murine embryonic stem cells. Proc Natl Acad Sci U S A 107 69 74

30. HoVMSchafferBEKarnezisANParkKSSageJ 2009 The retinoblastoma gene Rb and its family member p130 suppress lung adenocarcinoma induced by oncogenic K-Ras. Oncogene 28 1393 1399

31. SchafferBEParkKSYiuGConklinJFLinC 2010 Loss of p130 accelerates tumor development in a mouse model for human small-cell lung carcinoma. Cancer Res 70 3877 3883

32. PellegriniMRendaMEVecchioA 2010 TRStalker: an efficient heuristic for finding fuzzy tandem repeats. Bioinformatics 26 i358 366

33. XuJWuRCO'MalleyBW 2009 Normal and cancer-related functions of the p160 steroid receptor co-activator (SRC) family. Nat Rev Cancer 9 615 630

34. StranskyNEgloffAMTwardADKosticADCibulskisK 2011 The mutational landscape of head and neck squamous cell carcinoma. Science 333 1157 1160

35. The Cancer Genome Atlas Research Network 2011 Integrated genomic analyses of ovarian carcinoma. Nature 474 609 615

36. LeMTShyh-ChangSLingKawSChinLTehC 2011 Conserved regulation of p53 network dosage by MicroRNA-125b occurs through evolving miRNA-target gene pairs. PLoS Genet 7 e1002242 doi:10.1371/journal.pgen.1002242

37. VincesMDLegendreMCaldaraMHagiharaMVerstrepenKJ 2009 Unstable tandem repeats in promoters confer transcriptional evolvability. Science 324 1213 1216

38. GemayelRVincesMDLegendreMVerstrepenKJ 2010 Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu Rev Genet 44 445 477

39. PostSMQuintas-CardamaAPantVIwakumaTHamirA 2010 A high-frequency regulatory polymorphism in the p53 pathway accelerates tumor development. Cancer Cell 18 220 230

40. HuWFengZTereskyAKLevineAJ 2007 p53 regulates maternal reproduction through LIF. Nature 450 721 724

41. RileyTYuXSontagELevineA 2009 The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes. BMC Bioinformatics 10 111

42. JaiswalASNarayanS 2001 p53-dependent transcriptional regulation of the APC promoter in colon cancer cells treated with DNA alkylating agents. J Biol Chem 276 18193 18199

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