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Runs of Homozygosity Implicate Autozygosity as a Schizophrenia Risk Factor
Autozygosity occurs when two chromosomal segments that are identical from a common ancestor are inherited from each parent. This occurs at high rates in the offspring of mates who are closely related (inbreeding), but also occurs at lower levels among the offspring of distantly related mates. Here, we use runs of homozygosity in genome-wide SNP data to estimate the proportion of the autosome that exists in autozygous tracts in 9,388 cases with schizophrenia and 12,456 controls. We estimate that the odds of schizophrenia increase by ∼17% for every 1% increase in genome-wide autozygosity. This association is not due to one or a few regions, but results from many autozygous segments spread throughout the genome, and is consistent with a role for multiple recessive or partially recessive alleles in the etiology of schizophrenia. Such a bias towards recessivity suggests that alleles that increase the risk of schizophrenia have been selected against over evolutionary time.
Vyšlo v časopise: Runs of Homozygosity Implicate Autozygosity as a Schizophrenia Risk Factor. PLoS Genet 8(4): e32767. doi:10.1371/journal.pgen.1002656
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002656Souhrn
Autozygosity occurs when two chromosomal segments that are identical from a common ancestor are inherited from each parent. This occurs at high rates in the offspring of mates who are closely related (inbreeding), but also occurs at lower levels among the offspring of distantly related mates. Here, we use runs of homozygosity in genome-wide SNP data to estimate the proportion of the autosome that exists in autozygous tracts in 9,388 cases with schizophrenia and 12,456 controls. We estimate that the odds of schizophrenia increase by ∼17% for every 1% increase in genome-wide autozygosity. This association is not due to one or a few regions, but results from many autozygous segments spread throughout the genome, and is consistent with a role for multiple recessive or partially recessive alleles in the etiology of schizophrenia. Such a bias towards recessivity suggests that alleles that increase the risk of schizophrenia have been selected against over evolutionary time.
Zdroje
1. SullivanPFKendlerKSNealeMC 2003 Schizophrenia as a complex trait: Evidence from a meta-analysis of twin studies. Arch Gen Psychiat 60 1187 1192
2. SahaSChantDWelhamJMcGrathJ 2005 A systematic review of the prevalence of schizophrenia. PLoS Med 2 e141 doi:10.1371/journal.pmed.0020141
3. Psychiatric GWAS Consortium 2011 Genome-wide association study identifies five novel schizophrenia loci. Nat Gen in press
4. PurcellSMWrayNRStoneJLVisscherPMO'DonovanMC 2009 Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. Nature 460 748 752
5. LeeSHDe CandiaTRipkeSYangJ PGC-SCZ 2012 Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs. Nat Genet 44 247 250
6. CharlesworthDWillisJH 2009 The genetics of inbreeding depression. Nat Rev Genet 10 783 796
7. RoffDA 1997 Evolutionary quantitative genetics New York, NY Chapman & Hall
8. DeRoseMARoffDA 1999 A comparison of inbreeding depression in life-history and morphological traits in animals. Evolution 53 1288 1292
9. ShamiSAQaisarRBittlesAH 1991 Consanguinity and adult morbidity in Pakistan. Lancet 338 954
10. RudanISmolej-NarancicNCampbellHCarothersAWrightA 2003 Inbreeding and the genetic complexity of human hypertension. Genetics 163 1011 1021
11. RudanISkaric-JuricTSmolej-NarancicNJanicijevicBRudanD 2004 Inbreeding and susceptibility to osteoporosis in Croatian island isolates. Coll Antropol 28 585 601
12. LebelRRGallagherWB 1989 Wisconsin consanguinity studies. II: Familial adenocarcinomatosis. Am J Med Genet 33 1 6
13. AfzalM 1988 Consquences of consanguinity on cognitive behavior. Beh Genet 18 583 594
14. MortonNE 1979 Effect of inbreeding on IQ and mental retardation. Proc Nat Acad Sci 75 3906 3908
15. AbaskulievAASkobloGV 1975 Inbreeding, endogamy and exogamy among relatives of schizophrenia patients. Genetika 11 145 148
16. BulayevOAPavlovaTABulayevaKB 2009 The effects of inbreeding on aggregation of complex diseases in genetic isolates. Russ J Genet 45 961 968
17. NimgaonkarVLMansourHFathiWKleiLWoodJ 2010 Consanguinity and increased risk for schizophrenia in Egypt. Schizophrenia Res 120 108 112
18. ChalebyK 1987 Cousin Marriages and Schizophrenia in Saudi-Arabia. Brit J Psychiat 150 547 549
19. GindilisVMGainullinRGShmaonovaLM 1989 Genetico-demographic patterns of the prevalence of various forms of endogenous psychoses. Genetika 25 734 743
20. RudanIRudanDCampbellHCarothersAWrightA 2003 Inbreeding and risk of late onset complex disease. J Med Genet 40 925 932
21. AhmedAH 1979 Consanguinity and Schizophrenia in Sudan. Brit J Psychiat 134 635 636
22. ChalebyKTumaTA 1986 Cousin marriages and schizophrenia in Saudi Arabia. Brit J Psychiat 150 547 549
23. SaugstadLØdegardØ 1986 Inbreeding and schizophrenia. Clin Genet 30 261 275
24. BittlesAHNeelJV 1994 The costs of human inbreeding and their implications for variations at the DNA level. Nat Genet 8 117 121
25. KellerMCVisscherPMGoddardME 2011 Quantification of inbreeding due to distant ancestors and its detection using dense SNP data. Genetics 189 237 249
26. WrightS 1922 Coefficients of inbreeding and relationships. Am Nat 56 330 339
27. HanssonBWesterbergL 2002 On the correlation between heterozygosity and fitness in natural populations. Mol Ecol 11 2467 2474
28. VineAEMcQuillinABassNJPereiraAKandaswamyR 2009 No evidence for excess runs of homozygosity in bipolar disorder. Psychiatr Genet 19 165 170
29. LenczTLambertCDeRossePBurdickKEMorganTV 2007 Runs of homozygosity reveal highly penetrant recessive loci in schizophrenia. Proc Natl Acad Sci U S A 104 19942 19947
30. KuCSNaidooNTeoSMPawitanY 2011 Regions of homozygosity and their impact on complex diseases and traits. Hum Genet 129 1 15
31. McQuillanRLeuteneggerALAbdel-RahmanRFranklinCSPericicM 2008 Runs of homozygosity in European populations. Am J Hum Genet 83 359 372
32. KirinMMcQuillanRFranklinCSCampbellHMcKeiguePM 2010 Genomic runs of homozygosity record population history and consanguinity. PLoS ONE 5 e13996 doi:10.1371/journal.pone.0013996
33. SpainSLCazierJBHoulstonRCarvajal-CarmonaLTomlinsonI 2009 Colorectal cancer risk is not associated with increased levels of homozygosity in a population from the United Kingdom. Cancer Res 69 7422 7429
34. Enciso-MoraVHoskingFJHoulstonRS 2010 Risk of breast and prostate cancer is not associated with increased homozygosity in outbred populations. Eur J Hum Genet 18 909 914
35. HoskingFJPapaemmanuilESheridanEKinseySELightfootT 2010 Genome-wide homozygosity signatures and childhood acute lymphoblastic leukemia risk. Blood 115 4472 4477
36. NallsMAGuerreiroRJSimon-SanchezJBrasJTTraynorBJ 2009 Extended tracts of homozygosity identify novel candidate genes associated with late-onset Alzheimer's disease. Neurogenet 10 183 190
37. SullivanPF 2010 The psychiatric GWAS consortium: big science comes to psychiatry. Neuron 68 182 186
38. BrowningBLBrowningSR 2009 A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet 84 210 223
39. HaoKChudinEMcElweeJSchadtEE 2009 Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies. BMC Genet 10 27
40. HowriganDPSimonsonMAKellerMC 2011 Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms. BMC Genom 12 460 475
41. FisherRA 1954 A fuller theory of “junctions” in inbreeding. Heredity 8 187 197
42. NgMYLevinsonDFFaraoneSVSuarezBKDeLisiLE 2009 Meta-analysis of 32 genome-wide linkage studies of schizophrenia. Mol Psychiatry 14 774 785
43. LevinsonDFDuanJOhSWangKSandersAR 2011 Copy number variants in schizophrenia: confirmation of five previous findings and new evidence for 3q29 microdeletions and VIPR2 duplications. Am J Psychiat 168 302 316
44. AlperCALarsenCEDubeyDPAwdehZLFiciDA 2006 The haplotype structure of the human major histocompatibility complex. Hum Immunol 67 73 84
45. TraherneJA 2008 Human MHC architecture and evolution: implications for disease association studies. Int J Immunogenet 35 179 192
46. ChakrabortyRChakravartiA 1977 On consanguineous marriages and the genetic load. Hum Genet 36 47 54
47. BittlesAHBlackML 2010 Evolution in health and medicine Sackler colloquium: Consanguinity, human evolution, and complex diseases. Proc Natl Acad Sci U S A 107 Suppl 1 1779 1786
48. KellerMCMillerGF 2006 Resolving the paradox of common, harmful, heritable mental disorders: Which evolutionary genetic models work best? Behav Brain Sci 29 385 452
49. KendlerKSMcGuireMTGruenbergAMO'HareASpellmanM 1993 The Roscommon family study. Arch Gen Psychiat 50 527 540
50. FaraoneSVBleharMPeppleJMoldinSONortonJ 1996 Diagnostic accuracy and confusability analyses: an application to the Diagnostic Interview for Genetic Studies. Psychol Med 26 401 410
51. MarchiniJHowieB 2010 Genotype imputation for genome-wide association studies. Nat Rev Genet 11 499 511
52. LaurieCCDohenyKFMirelDBPughEWBierutLJ 2010 Quality control and quality assurance in genotypic data for genome-wide association studies. Genet Epidemiol 34 591 602
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