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A Coordinated Interdependent Protein Circuitry Stabilizes the Kinetochore Ensemble to Protect CENP-A in the Human Pathogenic Yeast


Unlike most eukaryotes, a kinetochore is fully assembled early in the cell cycle in budding yeasts Saccharomyces cerevisiae and Candida albicans. These kinetochores are clustered together throughout the cell cycle. Kinetochore assembly on point centromeres of S. cerevisiae is considered to be a step-wise process that initiates with binding of inner kinetochore proteins on specific centromere DNA sequence motifs. In contrast, kinetochore formation in C. albicans, that carries regional centromeres of 3–5 kb long, has been shown to be a sequence independent but an epigenetically regulated event. In this study, we investigated the process of kinetochore assembly/disassembly in C. albicans. Localization dependence of various kinetochore proteins studied by confocal microscopy and chromatin immunoprecipitation (ChIP) assays revealed that assembly of a kinetochore is a highly coordinated and interdependent event. Partial depletion of an essential kinetochore protein affects integrity of the kinetochore cluster. Further protein depletion results in complete collapse of the kinetochore architecture. In addition, GFP-tagged kinetochore proteins confirmed similar time-dependent disintegration upon gradual depletion of an outer kinetochore protein (Dam1). The loss of integrity of a kinetochore formed on centromeric chromatin was demonstrated by reduced binding of CENP-A and CENP-C at the centromeres. Most strikingly, Western blot analysis revealed that gradual depletion of any of these essential kinetochore proteins results in concomitant reduction in cellular protein levels of CENP-A. We further demonstrated that centromere bound CENP-A is protected from the proteosomal mediated degradation. Based on these results, we propose that a coordinated interdependent circuitry of several evolutionarily conserved essential kinetochore proteins ensures integrity of a kinetochore formed on the foundation of CENP-A containing centromeric chromatin.


Vyšlo v časopise: A Coordinated Interdependent Protein Circuitry Stabilizes the Kinetochore Ensemble to Protect CENP-A in the Human Pathogenic Yeast. PLoS Genet 8(4): e32767. doi:10.1371/journal.pgen.1002661
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002661

Souhrn

Unlike most eukaryotes, a kinetochore is fully assembled early in the cell cycle in budding yeasts Saccharomyces cerevisiae and Candida albicans. These kinetochores are clustered together throughout the cell cycle. Kinetochore assembly on point centromeres of S. cerevisiae is considered to be a step-wise process that initiates with binding of inner kinetochore proteins on specific centromere DNA sequence motifs. In contrast, kinetochore formation in C. albicans, that carries regional centromeres of 3–5 kb long, has been shown to be a sequence independent but an epigenetically regulated event. In this study, we investigated the process of kinetochore assembly/disassembly in C. albicans. Localization dependence of various kinetochore proteins studied by confocal microscopy and chromatin immunoprecipitation (ChIP) assays revealed that assembly of a kinetochore is a highly coordinated and interdependent event. Partial depletion of an essential kinetochore protein affects integrity of the kinetochore cluster. Further protein depletion results in complete collapse of the kinetochore architecture. In addition, GFP-tagged kinetochore proteins confirmed similar time-dependent disintegration upon gradual depletion of an outer kinetochore protein (Dam1). The loss of integrity of a kinetochore formed on centromeric chromatin was demonstrated by reduced binding of CENP-A and CENP-C at the centromeres. Most strikingly, Western blot analysis revealed that gradual depletion of any of these essential kinetochore proteins results in concomitant reduction in cellular protein levels of CENP-A. We further demonstrated that centromere bound CENP-A is protected from the proteosomal mediated degradation. Based on these results, we propose that a coordinated interdependent circuitry of several evolutionarily conserved essential kinetochore proteins ensures integrity of a kinetochore formed on the foundation of CENP-A containing centromeric chromatin.


Zdroje

1. AllshireRCKarpenGH 2008 Epigenetic regulation of centromeric chromatin: old dogs, new tricks? Nat Rev Genet 9 923 937

2. ClarkeLCarbonJ 1980 ISOLATION OF A YEAST CENTROMERE AND CONSTRUCTION OF FUNCTIONAL SMALL CIRCULAR CHROMOSOMES. Nature 287 504 509

3. ClarkeL 1990 Centromeres of budding and fission yeasts. Trends Genet 6 150 154

4. FishelBAmstutzHBaumMCarbonJClarkeL 1988 Structural organization and functional analysis of centromeric DNA in the fission yeast Schizosaccharomyces pombe. Mol Cell Biol 8 754 763

5. SunXWahlstromJKarpenG 1997 Molecular structure of a functional Drosophila centromere. Cell 91 1007 1019

6. CamahortRLiBFlorensLSwansonSKWashburnMP 2007 Scm3 is essential to recruit the histone h3 variant cse4 to centromeres and to maintain a functional kinetochore. Mol Cell 26 853 865

7. CamahortRShivarajuMMattinglyMLiBNakanishiS 2009 Cse4 is part of an octameric nucleosome in budding yeast. Mol Cell 35 794 805

8. DimitriadisEKWeberCGillRKDiekmannSDalalY 2010 Tetrameric organization of vertebrate centromeric nucleosomes. Proc Natl Acad Sci U S A 107 20317 20322

9. MizuguchiGXiaoHWisniewskiJSmithMMWuC 2007 Nonhistone Scm3 and histones CenH3-H4 assemble the core of centromere-specific nucleosomes. Cell 129 1153 1164

10. FoltzDRJansenLEBaileyAOYatesJRBassettEA 2009 Centromere-specific assembly of CENP-a nucleosomes is mediated by HJURP. Cell 137 472 484

11. EkwallK 2007 Epigenetic control of centromere behavior. Annu Rev Genet 41 63 81

12. BlowerMDKarpenGH 2001 The role of Drosophila CID in kinetochore formation, cell-cycle progression and heterochromatin interactions. Nat Cell Biol 3 730 739

13. DesaiARybinaSMüller-ReichertTShevchenkoAHymanA 2003 KNL-1 directs assembly of the microtubule-binding interface of the kinetochore in C. elegans. Genes Dev 17 2421 2435

14. OegemaKDesaiARybinaSKirkhamMHymanAA 2001 Functional analysis of kinetochore assembly in Caenorhabditis elegans. J Cell Biol 153 1209 1226

15. GoshimaGKiyomitsuTYodaKYanagidaM 2003 Human centromere chromatin protein hMis12, essential for equal segregation, is independent of CENP-A loading pathway. J Cell Biol 160 25 39

16. HajraSGhoshSKJayaramM 2006 The centromere-specific histone variant Cse4p (CENP-A) is essential for functional chromatin architecture at the yeast 2-microm circle partitioning locus and promotes equal plasmid segregation. J Cell Biol 174 779 790

17. RoyBBurrackLSLoneMABermanJSanyalK 2011 CaMtw1, a member of the evolutionarily conserved Mis12 kinetochore protein family, is required for efficient inner kinetochore assembly in the pathogenic yeast Candida albicans. Mol Microbiol

18. HayashiTFujitaYIwasakiOAdachiYTakahashiK 2004 Mis16 and Mis18 are required for CENP-A loading and histone deacetylation at centromeres. Cell 118 715 729

19. TakahashiKTakayamaYMasudaFKobayashiYSaitohS 2005 Two distinct pathways responsible for the loading of CENP-A to centromeres in the fission yeast cell cycle. Philos Trans R Soc Lond B Biol Sci 360 595 606; discussion 606–597

20. OkadaMCheesemanIMHoriTOkawaKMcLeodIX 2006 The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres. Nat Cell Biol 8 446 457

21. ClevelandDWMaoYSullivanKF 2003 Centromeres and kinetochores: from epigenetics to mitotic checkpoint signaling. Cell 112 407 421

22. LechnerJCarbonJ 1991 A 240 kd multisubunit protein complex, CBF3, is a major component of the budding yeast centromere. Cell 64 717 725

23. De WulfPMcAinshADSorgerPK 2003 Hierarchical assembly of the budding yeast kinetochore from multiple subcomplexes. Genes Dev 17 2902 2921

24. CheesemanIMDesaiA 2008 Molecular architecture of the kinetochore-microtubule interface. Nat Rev Mol Cell Biol 9 33 46

25. McAinshADTytellJDSorgerPK 2003 Structure, function, and regulation of budding yeast kinetochores. Annu Rev Cell Dev Biol 19 519 539

26. WelburnJPGrishchukELBackerCBWilson-KubalekEMYatesJR 2009 The human kinetochore Ska1 complex facilitates microtubule depolymerization-coupled motility. Dev Cell 16 374 385

27. BharadwajRQiWYuH 2004 Identification of two novel components of the human NDC80 kinetochore complex. J Biol Chem 279 13076 13085

28. CheesemanIMBrewCWolyniakMDesaiAAndersonS 2001 Implication of a novel multiprotein Dam1p complex in outer kinetochore function. J Cell Biol 155 1137 1145

29. Enquist-NewmanMCheesemanIMVan GoorDDrubinDGMeluhPB 2001 Dad1p, third component of the Duo1p/Dam1p complex involved in kinetochore function and mitotic spindle integrity. Mol Biol Cell 12 2601 2613

30. JankeCOrtizJTanakaTULechnerJSchiebelE 2002 Four new subunits of the Dam1-Duo1 complex reveal novel functions in sister kinetochore biorientation. Embo Journal 21 181 193

31. JinQWFuchsJLoidlJ 2000 Centromere clustering is a major determinant of yeast interphase nuclear organization. J Cell Sci 113 Pt 11 1903 1912

32. DuanZAndronescuMSchutzKMcIlwainSKimYJ 2010 A three-dimensional model of the yeast genome. Nature 465 363 367

33. AndersonMHaaseJYehEBloomK 2009 Function and assembly of DNA looping, clustering, and microtubule attachment complexes within a eukaryotic kinetochore. Mol Biol Cell 20 4131 4139

34. FunabikiHHaganIUzawaSYanagidaM 1993 Cell cycle-dependent specific positioning and clustering of centromeres and telomeres in fission yeast. J Cell Biol 121 961 976

35. BrennerSPepperDBernsMWTanEBrinkleyBR 1981 Kinetochore structure, duplication, and distribution in mammalian cells: analysis by human autoantibodies from scleroderma patients. J Cell Biol 91 95 102

36. MonenJMaddoxPSHyndmanFOegemaKDesaiA 2005 Differential role of CENP-A in the segregation of holocentric C. elegans chromosomes during meiosis and mitosis. Nat Cell Biol 7 1248 1255

37. KetelCWangHSMcClellanMBouchonvilleKSelmeckiA 2009 Neocentromeres form efficiently at multiple possible loci in Candida albicans. PLoS Genet 5 e1000400 doi:10.1371/journal.pgen.1000400

38. MarshallOJChuehACWongLHChooKH 2008 Neocentromeres: new insights into centromere structure, disease development, and karyotype evolution. Am J Hum Genet 82 261 282

39. IshiiKOgiyamaYChikashigeYSoejimaSMasudaF 2008 Heterochromatin integrity affects chromosome reorganization after centromere dysfunction. Science 321 1088 1091

40. WilliamsBCMurphyTDGoldbergMLKarpenGH 1998 Neocentromere activity of structurally acentric mini-chromosomes in Drosophila. Nat Genet 18 30 37

41. Moreno-MorenoOTorras-LlortMAzorínF 2006 Proteolysis restricts localization of CID, the centromere-specific histone H3 variant of Drosophila, to centromeres. Nucleic Acids Res 34 6247 6255

42. CollinsKAFuruyamaSBigginsS 2004 Proteolysis contributes to the exclusive centromere localization of the yeast Cse4/CENP-A histone H3 variant. Curr Biol 14 1968 1972

43. CollinsKACastilloARTatsutaniSYBigginsS 2005 De novo kinetochore assembly requires the centromeric histone H3 variant. Mol Biol Cell 16 5649 5660

44. JoglekarAPBouckDFinleyKLiuXWanY 2008 Molecular architecture of the kinetochore-microtubule attachment site is conserved between point and regional centromeres. J Cell Biol 181 587 594

45. BaumMSanyalKMishraPKThalerNCarbonJ 2006 Formation of functional centromeric chromatin is specified epigenetically in Candida albicans. Proc Natl Acad Sci U S A 103 14877 14882

46. SanyalKBaumMCarbonJ 2004 Centromeric DNA sequences in the pathogenic yeast Candida albicans are all different and unique. Proc Natl Acad Sci U S A 101 11374 11379

47. PadmanabhanSThakurJSiddharthanRSanyalK 2008 Rapid evolution of Cse4p-rich centromeric DNA sequences in closely related pathogenic yeasts, Candida albicans and Candida dubliniensis. Proc Natl Acad Sci U S A 105 19797 19802

48. SanyalKCarbonJ 2002 The CENP-A homolog CaCse4p in the pathogenic yeast Candida albicans is a centromere protein essential for chromosome transmission. Proc Natl Acad Sci U S A 99 12969 12974

49. ThakurJSanyalK 2011 The essentiality of the fungus-specific Dam1 complex is correlated with a one-kinetochore-one-microtubule interaction present throughout the cell cycle, independent of the nature of a centromere. Eukaryot Cell 10 1295 1305

50. CareRSTrevethickJBinleyKMSudberyPE 1999 The MET3 promoter: a new tool for Candida albicans molecular genetics. Mol Microbiol 34 792 798

51. LeukerCESonnebornADelbrückSErnstJF 1997 Sequence and promoter regulation of the PCK1 gene encoding phosphoenolpyruvate carboxykinase of the fungal pathogen Candida albicans. Gene 192 235 240

52. TanakaTU 2010 Kinetochore-microtubule interactions: steps towards bi-orientation. EMBO J 29 4070 4082

53. TanakaKKitamuraETanakaTU 2010 Live-cell analysis of kinetochore-microtubule interaction in budding yeast. Methods 51 206 213

54. LiuXMcLeodIAndersonSYatesJRHeX 2005 Molecular analysis of kinetochore architecture in fission yeast. EMBO J 24 2919 2930

55. LiuSTRattnerJBJablonskiSAYenTJ 2006 Mapping the assembly pathways that specify formation of the trilaminar kinetochore plates in human cells. J Cell Biol 175 41 53

56. RégnierVVagnarelliPFukagawaTZerjalTBurnsE 2005 CENP-A is required for accurate chromosome segregation and sustained kinetochore association of BubR1. Mol Cell Biol 25 3967 3981

57. WestermannSCheesemanIMAndersonSYatesJRDrubinDG 2003 Architecture of the budding yeast kinetochore reveals a conserved molecular core. J Cell Biol 163 215 222

58. PrzewlokaMRZhangWCostaPArchambaultVD'AvinoPP 2007 Molecular analysis of core kinetochore composition and assembly in Drosophila melanogaster. PLoS ONE 2 e478 doi:10.1371/journal.pone.0000478

59. TakahashiKChenESYanagidaM 2000 Requirement of Mis6 centromere connector for localizing a CENP-A-like protein in fission yeast. Science 288 2215 2219

60. StraightAFMarshallWFSedatJWMurrayAW 1997 Mitosis in living budding yeast: anaphase A but no metaphase plate. Science 277 574 578

61. DekkerJRippeKDekkerMKlecknerN 2002 Capturing chromosome conformation. Science 295 1306 1311

62. Gerami-NejadMBermanJGaleCA 2001 Cassettes for PCR-mediated construction of green, yellow, and cyan fluorescent protein fusions in Candida albicans. Yeast 18 859 864

63. ReussOVikAKolterRMorschhäuserJ 2004 The SAT1 flipper, an optimized tool for gene disruption in Candida albicans. Gene 341 119 127

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