#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

PCNA Ubiquitination Is Important, But Not Essential for Translesion DNA Synthesis in Mammalian Cells


Translesion DNA synthesis (TLS) is a DNA damage tolerance mechanism in which specialized low-fidelity DNA polymerases bypass replication-blocking lesions, and it is usually associated with mutagenesis. In Saccharomyces cerevisiae a key event in TLS is the monoubiquitination of PCNA, which enables recruitment of the specialized polymerases to the damaged site through their ubiquitin-binding domain. In mammals, however, there is a debate on the requirement for ubiquitinated PCNA (PCNA-Ub) in TLS. We show that UV-induced Rpa foci, indicative of single-stranded DNA (ssDNA) regions caused by UV, accumulate faster and disappear more slowly in PcnaK164R/K164R cells, which are resistant to PCNA ubiquitination, compared to Pcna+/+ cells, consistent with a TLS defect. Direct analysis of TLS in these cells, using gapped plasmids with site-specific lesions, showed that TLS is strongly reduced across UV lesions and the cisplatin-induced intrastrand GG crosslink. A similar effect was obtained in cells lacking Rad18, the E3 ubiquitin ligase which monoubiquitinates PCNA. Consistently, cells lacking Usp1, the enzyme that de-ubiquitinates PCNA exhibited increased TLS across a UV lesion and the cisplatin adduct. In contrast, cells lacking the Rad5-homologs Shprh and Hltf, which polyubiquitinate PCNA, exhibited normal TLS. Knocking down the expression of the TLS genes Rev3L, PolH, or Rev1 in PcnaK164R/K164R mouse embryo fibroblasts caused each an increased sensitivity to UV radiation, indicating the existence of TLS pathways that are independent of PCNA-Ub. Taken together these results indicate that PCNA-Ub is required for maximal TLS. However, TLS polymerases can be recruited to damaged DNA also in the absence of PCNA-Ub, and perform TLS, albeit at a significantly lower efficiency and altered mutagenic specificity.


Vyšlo v časopise: PCNA Ubiquitination Is Important, But Not Essential for Translesion DNA Synthesis in Mammalian Cells. PLoS Genet 7(9): e32767. doi:10.1371/journal.pgen.1002262
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002262

Souhrn

Translesion DNA synthesis (TLS) is a DNA damage tolerance mechanism in which specialized low-fidelity DNA polymerases bypass replication-blocking lesions, and it is usually associated with mutagenesis. In Saccharomyces cerevisiae a key event in TLS is the monoubiquitination of PCNA, which enables recruitment of the specialized polymerases to the damaged site through their ubiquitin-binding domain. In mammals, however, there is a debate on the requirement for ubiquitinated PCNA (PCNA-Ub) in TLS. We show that UV-induced Rpa foci, indicative of single-stranded DNA (ssDNA) regions caused by UV, accumulate faster and disappear more slowly in PcnaK164R/K164R cells, which are resistant to PCNA ubiquitination, compared to Pcna+/+ cells, consistent with a TLS defect. Direct analysis of TLS in these cells, using gapped plasmids with site-specific lesions, showed that TLS is strongly reduced across UV lesions and the cisplatin-induced intrastrand GG crosslink. A similar effect was obtained in cells lacking Rad18, the E3 ubiquitin ligase which monoubiquitinates PCNA. Consistently, cells lacking Usp1, the enzyme that de-ubiquitinates PCNA exhibited increased TLS across a UV lesion and the cisplatin adduct. In contrast, cells lacking the Rad5-homologs Shprh and Hltf, which polyubiquitinate PCNA, exhibited normal TLS. Knocking down the expression of the TLS genes Rev3L, PolH, or Rev1 in PcnaK164R/K164R mouse embryo fibroblasts caused each an increased sensitivity to UV radiation, indicating the existence of TLS pathways that are independent of PCNA-Ub. Taken together these results indicate that PCNA-Ub is required for maximal TLS. However, TLS polymerases can be recruited to damaged DNA also in the absence of PCNA-Ub, and perform TLS, albeit at a significantly lower efficiency and altered mutagenic specificity.


Zdroje

1. PrakashSJohnsonREPrakashL 2005 Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function. Annu Rev Biochem 74 317 353

2. LivnehZ 2006 Keeping mammalian mutation load in check. Regulation of the activity of error-prone DNA polymerases by p53 and p21. Cell Cycle 5 1918 1922

3. YangWWoodgateR 2007 What a difference a decade makes: Insights into translesion synthesis. Proc Natl Acad Sci USA 104 15591 15598

4. FriedbergEC 2005 Suffering in silence: The tolerance of DNA damage. Nature Rev Mol Cell Biol 6 943 953

5. JohnsonREWashingtonMTHaracskaLPrakashSPrakashL 2000 Eukaryotic polymerases ι and ζ act sequentially to bypass DNA lesions. Nature 406 1015 1019

6. ShacharSZivOAvkinSAdarSWittschiebenJ 2009 Two-polymerase mechanisms dictate error-free and error-prone translesion DNA synthesis in mammals. EMBO J 28 383 393

7. LivnehZZivOShacharS 2010 Multiple two-polymerase mechanisms in mammalian translesion DNA synthesis. Cell Cycle 9 729 735

8. GanGNWittschiebenJPWittschiebenBOWoodRD 2008 DNA polymerase ζ (polζ) in higher eukaryotes. Cell Research 18 174 183

9. JohnsonREKondratickCMPrakashSPrakashL 1999 hRAD30 mutations in the variant form of xeroderma pigmentosum. Science 285 263 265

10. MasutaniCKusumotoRYamadaADohmaeNYokoiM 1999 The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η. Nature 399 700 704

11. HoegeCPfanderBMoldovanGLPyrowolakisGJentschS 2002 RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO. Nature 419 135 141

12. StelterPUlrichHD 2003 Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation. Nature 425 188 191

13. KannouchePLWingJLehmannAR 2004 Interaction of human DNA polymerase η with monoubiquitinated PCNA: a possible mechanism for the polymerase switch in response to DNA damage. Mol Cell 14 491 500

14. WatanabeKTateishiSKawasujiMTsurimotoTInoueH 2004 Rad18 guides polη to replication stalling sites through physical interaction and PCNA monoubiquitination. EMBO J 23 3886 3896

15. AvkinSSevilyaZToubeLGeacintovNEChaneySG 2006 p53 and p21 regulate error-prone DNA repair to yield a lower mutation load. Mol Cell 22 407 413

16. SoriaGPodhajcerOGottifrediV 2006 P21Cip1/WAF1 downregulation is required for efficient PCNA ubiquitination after UV irradiation. Oncogene 25 2829 2838

17. JentschSMullerS 2010 Regulatory Functions of Ubiquitin and SUMO in DNA Repair Pathways. Subcell Biochem 54 184 194

18. UlrichHD 2007 Conservation of DNA damage tolerance pathways from yeast to humans. Biochem Soc Trans 35 1334 1337

19. EdmundsCESimpsonLJSaleJE 2008 PCNA ubiquitination and REV1 define temporally distinct mechanisms for controlling translesion synthesis in the avian cell line DT40. Mol Cell 30 519 529

20. SzütsDMarcusAPHimotoMIwaiSSaleJE 2008 REV1 restrains DNA polymerase ζ to ensure frame fidelity during translesion synthesis of UV photoproducts in vivo. Nucleic Acids Res 36 6767 6780

21. BrownSNiimiALehmannAR 2009 Ubiquitination and deubiquitination of PCNA in response to stalling of the replication fork. Cell Cycle 8 689 692

22. BienkoMGreenCMCrosettoNRudolfFZapartG 2005 Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis. Science 310 1821 1824

23. BienkoMGreenCMSabbionedaSCrosettoNMaticI 2010 Regulation of translesion synthesis DNA polymerase η by monoubiquitination. Mol Cell 37 396 407

24. AcharyaNYoonJHGaliHUnkIHaracskaL 2008 Roles of PCNA-binding and ubiquitin-binding domains in human DNA polymerase η in translesion DNA synthesis. Proc Natl Acad Sci USA 105 17724 17729

25. AcharyaNBrahmaAHaracskaLPrakashLPrakashS 2007 Mutations in the ubiquitin binding UBZ motif of DNA polymerase η do not impair its function in translesion synthesis during replication. Mol Cell Biol 27 7266 7272

26. SabbionedaSGreenCMBienkoMKannouchePDikicI 2009 Ubiquitin-binding motif of human DNA polymerase η is required for correct localization. Proc Natl Acad Sci U S A 106 E20; author reply E21

27. AcharyaNYoonJHHurwitzJPrakashLPrakashS 2010 DNA polymerase η lacking the ubiquitin-binding domain promotes replicative lesion bypass in humans cells. Proc Natl Acad Sci U S A 107 10401 10405

28. ArakawaHMoldovanLSaribasakHSaribasakNNJentschJ 2006 A role for PCNA ubiquitination in immunoglobulin hypermutation. PLoS Biol 4 e366 doi:10.1371/journal.pbio.0040366

29. LangerakPNygrenAOKrijgerPHvan den BerkPCJacobsH 2007 A/T mutagenesis in hypermutated immunoglobulin genes strongly depends on PCNAK164 modification. J Exp Med 204 1989 1998

30. LehmannARFuchsRP 2006 Gaps and forks in DNA Replication: Rediscovering old models. DNA Repair 5 1595 1498

31. JansenJGTsaalbi-ShtylikAHendriksGGaliHHendelA 2009 Separate domains of Rev1 mediate two modes of DNA damage bypass in mammalian cells. Mol Cell Biol 29 3113 3123

32. RichardDJBoldersonEKhannaKK 2009 Multiple human single-stranded DNA binding proteins function in genome maintenance: structural, biochemical and functional analysis. Crit Rev Biochem Mol Biol 44 98 116

33. DiamantNHendelAVeredICarellTReissnerT 2011 DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicity. Nucleic Acids Res In Press

34. AvkinSGoldsmithMVelasco-MiguelSGeacintovNFriedbergEC 2004 Quantitative analysis of translesion DNA synthesis across a benzo[a]pyrene-guanine adduct in mammalian cells. The Role of DNA polymerase κ. J Biol Chem 279 53298 53305

35. HendelAZivOGuerangerQGeacintovNLivnehZ 2008 Reduced fidelity and increased efficiency of translesion DNA synthesis across a TT cyclobutane pyrimidine dimer, but not a TT 6-4 photoproduct, in human cells lacking DNA polymerase η. DNA Repair 7 1636 1646

36. ZivOGeacintovNNakajimaSYasuiALivnehZ 2009 DNA polymerase ζ cooperates with polymerases κ and ι in translesion DNA synthesis across pyrimidine photodimers in cells from XPV patients. Proc Natl Acad Sci U S A 106 11552 11557

37. TateishiSNiwaHMiyazakiJFujimotoSInoueH 2003 Enhanced genomic instability and defective postreplication repair in RAD18 knockout mouse embryonic stem cells. Mol Cell Biol 23 474 481

38. KrijgerPHLeeKYWitNvan den BerkPCWuX 2011 HLTF and SHPRH are not essential for PCNA polyubiquitination, survival and somatic hypermutation: Existence of an alternative E3 ligase. DNA Repair (Amst)

39. HuangTTNijmanSMBMirchandaniKDGalardyPJCohnMA 2006 Regulation of monoubiquitinated PCNA by DUB autocleavage. Nature Cell Biol 8 339 347

40. KimJMParmarKHuangMWeinstockDMRuitCA 2009 Inactivation of murine Usp1 results in genomic instability and a Fanconi anemia phenotype. Dev Cell 16 314 320

41. TeraiKAbbasTJazaeriAADuttaA CRL4(Cdt2) E3 ubiquitin ligase monoubiquitinates PCNA to promote translesion DNA synthesis. Mol Cell 37 143 149

42. MoldovanGLPfanderBJentschS 2007 PCNA, the maestro of the replication fork. Cell 129 665 679

43. TomidaJMasudaYHiroakiHIshikawaTSongI 2008 DNA damage-induced ubiquitylation of RFC2 subunit of replication factor C complex. J Biol Chem 283 9071 9079

44. LinJRZemanMKChenJYYeeMCCimprichKA 2011 SHPRH and HLTF Act in a Damage-Specific Manner to Coordinate Different Forms of Postreplication Repair and Prevent Mutagenesis. Mol Cell 42 237 249

45. BiXBarkleyLRSlaterDMTateishiSYamaizumiM 2006 Rad18 regulates DNA polymerase κ and is required for recovery from S-phase checkpoint-mediated arrest. Mol Cell Biol 26 3527 3540

46. Nikolaishvili-FeinbergNJenkinsGSNevisKRStausDPScarlettCO 2008 Ubiquitylation of proliferating cell nuclear antigen and recruitment of human DNA polymerase η. Biochemistry 47 4141 4150

47. SchmutzVJanel-BintzRWagnerJBiardDShiomiN 2010 Role of the ubiquitin-binding domain of Polη in Rad18-independent translesion DNA synthesis in human cell extracts. Nucleic Acids Res 38 6456 6465

48. HaracskaLTorres-RamosCAJohnsonREPrakashSPrakashL 2004 Opposing effects of ubiquitin conjugation and SUMO modification of PCNA on replicational bypass of DNA lesions in Saccharomyces cerevisiae. Mol Cell Biol 24 4267 4274

49. NiimiABrownSSabbionedaSKannouchePLScottA 2008 Regulation of proliferating cell nuclear antigen ubiquitination in mammalian cells. Proc Natl Acad Sci U S A 105 16125 16130

50. OhmoriHHanafusaTOhashiEVaziriC 2009 Separate roles of structured and unstructured regions of Y-family DNA polymerases. Adv Protein Chem Struct Biol 78 99 146

Štítky
Genetika Reprodukčná medicína

Článok vyšiel v časopise

PLOS Genetics


2011 Číslo 9
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Získaná hemofilie - Povědomí o nemoci a její diagnostika
nový kurz

Eozinofilní granulomatóza s polyangiitidou
Autori: doc. MUDr. Martina Doubková, Ph.D.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#