-
Články
- Časopisy
- Kurzy
- Témy
- Kongresy
- Videa
- Podcasty
PCNA Ubiquitination Is Important, But Not Essential for Translesion DNA Synthesis in Mammalian Cells
Translesion DNA synthesis (TLS) is a DNA damage tolerance mechanism in which specialized low-fidelity DNA polymerases bypass replication-blocking lesions, and it is usually associated with mutagenesis. In Saccharomyces cerevisiae a key event in TLS is the monoubiquitination of PCNA, which enables recruitment of the specialized polymerases to the damaged site through their ubiquitin-binding domain. In mammals, however, there is a debate on the requirement for ubiquitinated PCNA (PCNA-Ub) in TLS. We show that UV-induced Rpa foci, indicative of single-stranded DNA (ssDNA) regions caused by UV, accumulate faster and disappear more slowly in PcnaK164R/K164R cells, which are resistant to PCNA ubiquitination, compared to Pcna+/+ cells, consistent with a TLS defect. Direct analysis of TLS in these cells, using gapped plasmids with site-specific lesions, showed that TLS is strongly reduced across UV lesions and the cisplatin-induced intrastrand GG crosslink. A similar effect was obtained in cells lacking Rad18, the E3 ubiquitin ligase which monoubiquitinates PCNA. Consistently, cells lacking Usp1, the enzyme that de-ubiquitinates PCNA exhibited increased TLS across a UV lesion and the cisplatin adduct. In contrast, cells lacking the Rad5-homologs Shprh and Hltf, which polyubiquitinate PCNA, exhibited normal TLS. Knocking down the expression of the TLS genes Rev3L, PolH, or Rev1 in PcnaK164R/K164R mouse embryo fibroblasts caused each an increased sensitivity to UV radiation, indicating the existence of TLS pathways that are independent of PCNA-Ub. Taken together these results indicate that PCNA-Ub is required for maximal TLS. However, TLS polymerases can be recruited to damaged DNA also in the absence of PCNA-Ub, and perform TLS, albeit at a significantly lower efficiency and altered mutagenic specificity.
Vyšlo v časopise: PCNA Ubiquitination Is Important, But Not Essential for Translesion DNA Synthesis in Mammalian Cells. PLoS Genet 7(9): e32767. doi:10.1371/journal.pgen.1002262
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002262Souhrn
Translesion DNA synthesis (TLS) is a DNA damage tolerance mechanism in which specialized low-fidelity DNA polymerases bypass replication-blocking lesions, and it is usually associated with mutagenesis. In Saccharomyces cerevisiae a key event in TLS is the monoubiquitination of PCNA, which enables recruitment of the specialized polymerases to the damaged site through their ubiquitin-binding domain. In mammals, however, there is a debate on the requirement for ubiquitinated PCNA (PCNA-Ub) in TLS. We show that UV-induced Rpa foci, indicative of single-stranded DNA (ssDNA) regions caused by UV, accumulate faster and disappear more slowly in PcnaK164R/K164R cells, which are resistant to PCNA ubiquitination, compared to Pcna+/+ cells, consistent with a TLS defect. Direct analysis of TLS in these cells, using gapped plasmids with site-specific lesions, showed that TLS is strongly reduced across UV lesions and the cisplatin-induced intrastrand GG crosslink. A similar effect was obtained in cells lacking Rad18, the E3 ubiquitin ligase which monoubiquitinates PCNA. Consistently, cells lacking Usp1, the enzyme that de-ubiquitinates PCNA exhibited increased TLS across a UV lesion and the cisplatin adduct. In contrast, cells lacking the Rad5-homologs Shprh and Hltf, which polyubiquitinate PCNA, exhibited normal TLS. Knocking down the expression of the TLS genes Rev3L, PolH, or Rev1 in PcnaK164R/K164R mouse embryo fibroblasts caused each an increased sensitivity to UV radiation, indicating the existence of TLS pathways that are independent of PCNA-Ub. Taken together these results indicate that PCNA-Ub is required for maximal TLS. However, TLS polymerases can be recruited to damaged DNA also in the absence of PCNA-Ub, and perform TLS, albeit at a significantly lower efficiency and altered mutagenic specificity.
Zdroje
1. PrakashSJohnsonREPrakashL 2005 Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function. Annu Rev Biochem 74 317 353
2. LivnehZ 2006 Keeping mammalian mutation load in check. Regulation of the activity of error-prone DNA polymerases by p53 and p21. Cell Cycle 5 1918 1922
3. YangWWoodgateR 2007 What a difference a decade makes: Insights into translesion synthesis. Proc Natl Acad Sci USA 104 15591 15598
4. FriedbergEC 2005 Suffering in silence: The tolerance of DNA damage. Nature Rev Mol Cell Biol 6 943 953
5. JohnsonREWashingtonMTHaracskaLPrakashSPrakashL 2000 Eukaryotic polymerases ι and ζ act sequentially to bypass DNA lesions. Nature 406 1015 1019
6. ShacharSZivOAvkinSAdarSWittschiebenJ 2009 Two-polymerase mechanisms dictate error-free and error-prone translesion DNA synthesis in mammals. EMBO J 28 383 393
7. LivnehZZivOShacharS 2010 Multiple two-polymerase mechanisms in mammalian translesion DNA synthesis. Cell Cycle 9 729 735
8. GanGNWittschiebenJPWittschiebenBOWoodRD 2008 DNA polymerase ζ (polζ) in higher eukaryotes. Cell Research 18 174 183
9. JohnsonREKondratickCMPrakashSPrakashL 1999 hRAD30 mutations in the variant form of xeroderma pigmentosum. Science 285 263 265
10. MasutaniCKusumotoRYamadaADohmaeNYokoiM 1999 The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η. Nature 399 700 704
11. HoegeCPfanderBMoldovanGLPyrowolakisGJentschS 2002 RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO. Nature 419 135 141
12. StelterPUlrichHD 2003 Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation. Nature 425 188 191
13. KannouchePLWingJLehmannAR 2004 Interaction of human DNA polymerase η with monoubiquitinated PCNA: a possible mechanism for the polymerase switch in response to DNA damage. Mol Cell 14 491 500
14. WatanabeKTateishiSKawasujiMTsurimotoTInoueH 2004 Rad18 guides polη to replication stalling sites through physical interaction and PCNA monoubiquitination. EMBO J 23 3886 3896
15. AvkinSSevilyaZToubeLGeacintovNEChaneySG 2006 p53 and p21 regulate error-prone DNA repair to yield a lower mutation load. Mol Cell 22 407 413
16. SoriaGPodhajcerOGottifrediV 2006 P21Cip1/WAF1 downregulation is required for efficient PCNA ubiquitination after UV irradiation. Oncogene 25 2829 2838
17. JentschSMullerS 2010 Regulatory Functions of Ubiquitin and SUMO in DNA Repair Pathways. Subcell Biochem 54 184 194
18. UlrichHD 2007 Conservation of DNA damage tolerance pathways from yeast to humans. Biochem Soc Trans 35 1334 1337
19. EdmundsCESimpsonLJSaleJE 2008 PCNA ubiquitination and REV1 define temporally distinct mechanisms for controlling translesion synthesis in the avian cell line DT40. Mol Cell 30 519 529
20. SzütsDMarcusAPHimotoMIwaiSSaleJE 2008 REV1 restrains DNA polymerase ζ to ensure frame fidelity during translesion synthesis of UV photoproducts in vivo. Nucleic Acids Res 36 6767 6780
21. BrownSNiimiALehmannAR 2009 Ubiquitination and deubiquitination of PCNA in response to stalling of the replication fork. Cell Cycle 8 689 692
22. BienkoMGreenCMCrosettoNRudolfFZapartG 2005 Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis. Science 310 1821 1824
23. BienkoMGreenCMSabbionedaSCrosettoNMaticI 2010 Regulation of translesion synthesis DNA polymerase η by monoubiquitination. Mol Cell 37 396 407
24. AcharyaNYoonJHGaliHUnkIHaracskaL 2008 Roles of PCNA-binding and ubiquitin-binding domains in human DNA polymerase η in translesion DNA synthesis. Proc Natl Acad Sci USA 105 17724 17729
25. AcharyaNBrahmaAHaracskaLPrakashLPrakashS 2007 Mutations in the ubiquitin binding UBZ motif of DNA polymerase η do not impair its function in translesion synthesis during replication. Mol Cell Biol 27 7266 7272
26. SabbionedaSGreenCMBienkoMKannouchePDikicI 2009 Ubiquitin-binding motif of human DNA polymerase η is required for correct localization. Proc Natl Acad Sci U S A 106 E20; author reply E21
27. AcharyaNYoonJHHurwitzJPrakashLPrakashS 2010 DNA polymerase η lacking the ubiquitin-binding domain promotes replicative lesion bypass in humans cells. Proc Natl Acad Sci U S A 107 10401 10405
28. ArakawaHMoldovanLSaribasakHSaribasakNNJentschJ 2006 A role for PCNA ubiquitination in immunoglobulin hypermutation. PLoS Biol 4 e366 doi:10.1371/journal.pbio.0040366
29. LangerakPNygrenAOKrijgerPHvan den BerkPCJacobsH 2007 A/T mutagenesis in hypermutated immunoglobulin genes strongly depends on PCNAK164 modification. J Exp Med 204 1989 1998
30. LehmannARFuchsRP 2006 Gaps and forks in DNA Replication: Rediscovering old models. DNA Repair 5 1595 1498
31. JansenJGTsaalbi-ShtylikAHendriksGGaliHHendelA 2009 Separate domains of Rev1 mediate two modes of DNA damage bypass in mammalian cells. Mol Cell Biol 29 3113 3123
32. RichardDJBoldersonEKhannaKK 2009 Multiple human single-stranded DNA binding proteins function in genome maintenance: structural, biochemical and functional analysis. Crit Rev Biochem Mol Biol 44 98 116
33. DiamantNHendelAVeredICarellTReissnerT 2011 DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicity. Nucleic Acids Res In Press
34. AvkinSGoldsmithMVelasco-MiguelSGeacintovNFriedbergEC 2004 Quantitative analysis of translesion DNA synthesis across a benzo[a]pyrene-guanine adduct in mammalian cells. The Role of DNA polymerase κ. J Biol Chem 279 53298 53305
35. HendelAZivOGuerangerQGeacintovNLivnehZ 2008 Reduced fidelity and increased efficiency of translesion DNA synthesis across a TT cyclobutane pyrimidine dimer, but not a TT 6-4 photoproduct, in human cells lacking DNA polymerase η. DNA Repair 7 1636 1646
36. ZivOGeacintovNNakajimaSYasuiALivnehZ 2009 DNA polymerase ζ cooperates with polymerases κ and ι in translesion DNA synthesis across pyrimidine photodimers in cells from XPV patients. Proc Natl Acad Sci U S A 106 11552 11557
37. TateishiSNiwaHMiyazakiJFujimotoSInoueH 2003 Enhanced genomic instability and defective postreplication repair in RAD18 knockout mouse embryonic stem cells. Mol Cell Biol 23 474 481
38. KrijgerPHLeeKYWitNvan den BerkPCWuX 2011 HLTF and SHPRH are not essential for PCNA polyubiquitination, survival and somatic hypermutation: Existence of an alternative E3 ligase. DNA Repair (Amst)
39. HuangTTNijmanSMBMirchandaniKDGalardyPJCohnMA 2006 Regulation of monoubiquitinated PCNA by DUB autocleavage. Nature Cell Biol 8 339 347
40. KimJMParmarKHuangMWeinstockDMRuitCA 2009 Inactivation of murine Usp1 results in genomic instability and a Fanconi anemia phenotype. Dev Cell 16 314 320
41. TeraiKAbbasTJazaeriAADuttaA CRL4(Cdt2) E3 ubiquitin ligase monoubiquitinates PCNA to promote translesion DNA synthesis. Mol Cell 37 143 149
42. MoldovanGLPfanderBJentschS 2007 PCNA, the maestro of the replication fork. Cell 129 665 679
43. TomidaJMasudaYHiroakiHIshikawaTSongI 2008 DNA damage-induced ubiquitylation of RFC2 subunit of replication factor C complex. J Biol Chem 283 9071 9079
44. LinJRZemanMKChenJYYeeMCCimprichKA 2011 SHPRH and HLTF Act in a Damage-Specific Manner to Coordinate Different Forms of Postreplication Repair and Prevent Mutagenesis. Mol Cell 42 237 249
45. BiXBarkleyLRSlaterDMTateishiSYamaizumiM 2006 Rad18 regulates DNA polymerase κ and is required for recovery from S-phase checkpoint-mediated arrest. Mol Cell Biol 26 3527 3540
46. Nikolaishvili-FeinbergNJenkinsGSNevisKRStausDPScarlettCO 2008 Ubiquitylation of proliferating cell nuclear antigen and recruitment of human DNA polymerase η. Biochemistry 47 4141 4150
47. SchmutzVJanel-BintzRWagnerJBiardDShiomiN 2010 Role of the ubiquitin-binding domain of Polη in Rad18-independent translesion DNA synthesis in human cell extracts. Nucleic Acids Res 38 6456 6465
48. HaracskaLTorres-RamosCAJohnsonREPrakashSPrakashL 2004 Opposing effects of ubiquitin conjugation and SUMO modification of PCNA on replicational bypass of DNA lesions in Saccharomyces cerevisiae. Mol Cell Biol 24 4267 4274
49. NiimiABrownSSabbionedaSKannouchePLScottA 2008 Regulation of proliferating cell nuclear antigen ubiquitination in mammalian cells. Proc Natl Acad Sci U S A 105 16125 16130
50. OhmoriHHanafusaTOhashiEVaziriC 2009 Separate roles of structured and unstructured regions of Y-family DNA polymerases. Adv Protein Chem Struct Biol 78 99 146
Štítky
Genetika Reprodukčná medicína
Článek Produces a Long Noncoding RNA and Has General Functions in the Germline, Stem Cells, and BrainČlánek Inference of Relationships in Population Data Using Identity-by-Descent and Identity-by-StateČlánek A Genome-Wide Meta-Analysis of Six Type 1 Diabetes Cohorts Identifies Multiple Associated LociČlánek Retrotransposon-Induced Heterochromatin Spreading in the Mouse Revealed by Insertional PolymorphismsČlánek Essential Roles of BCCIP in Mouse Embryonic Development and Structural Stability of ChromosomesČlánek The Receptor Tyrosine Kinase Alk Controls Neurofibromin Functions in Drosophila Growth and LearningČlánek Genome-Wide Association Study Identifies Four Loci Associated with Eruption of Permanent Teeth
Článok vyšiel v časopisePLOS Genetics
Najčítanejšie tento týždeň
2011 Číslo 9- Gynekologové a odborníci na reprodukční medicínu se sejdou na prvním virtuálním summitu
- Je „freeze-all“ pro všechny? Odborníci na fertilitu diskutovali na virtuálním summitu
-
Všetky články tohto čísla
- Temporal Trends in Results Availability from Genome-Wide Association Studies
- Association of eGFR-Related Loci Identified by GWAS with Incident CKD and ESRD
- Genetic Variants at Chromosomes 2q35, 5p12, 6q25.1, 10q26.13, and 16q12.1 Influence the Risk of Breast Cancer in Men
- Large-Scale Gene-Centric Analysis Identifies Novel Variants for Coronary Artery Disease
- Genetic Association for Renal Traits among Participants of African Ancestry Reveals New Loci for Renal Function
- Transcriptome Kinetics Is Governed by a Genome-Wide Coupling of mRNA Production and Degradation: A Role for RNA Pol II
- Conserved Regulation of p53 Network Dosage by MicroRNA–125b Occurs through Evolving miRNA–Target Gene Pairs
- Heterozygous Mutations of Are Associated with an Increased Risk of Isolated Metopic Craniosynostosis in Humans and Mice
- Study of FoxA Pioneer Factor at Silent Genes Reveals Rfx-Repressed Enhancer at and a Potential Indicator of Esophageal Adenocarcinoma Development
- Cholesterol Metabolism Is Required for Intracellular Hedgehog Signal Transduction
- Produces a Long Noncoding RNA and Has General Functions in the Germline, Stem Cells, and Brain
- Age-Dependent Recombination Rates in Human Pedigrees
- Sequence Conservation and Functional Constraint on Intergenic Spacers in Reduced Genomes of the Obligate Symbiont
- Sex Chromosome Mosaicism and Hybrid Speciation among Tiger Swallowtail Butterflies
- A Negative Feedback Loop That Limits the Ectopic Activation of a Cell Type–Specific Sporulation Sigma Factor of
- Phased Whole-Genome Genetic Risk in a Family Quartet Using a Major Allele Reference Sequence
- Mutations in or near the Transmembrane Domain Alter PMEL Amyloid Formation from Functional to Pathogenic
- Inactivation of Alters Melanosome Shape But Has Only a Subtle Effect on Visible Pigmentation
- Novel Interactions between Actin and the Proteasome Revealed by Complex Haploinsufficiency
- Germline Genetic Variants Disturbing the /LIN28 Double-Negative Feedback Loop Alter Breast Cancer Susceptibility
- Separation of Recombination and SOS Response in RecA Suggests LexA Interaction Sites
- Inference of Relationships in Population Data Using Identity-by-Descent and Identity-by-State
- Misregulation of Scm3p/HJURP Causes Chromosome Instability in and Human Cells
- A Noncoding Point Mutation of Causes Multiple Developmental Malformations and Obesity in Twirler Mice
- The Evolutionarily Conserved Longevity Determinants HCF-1 and SIR-2.1/SIRT1 Collaborate to Regulate DAF-16/FOXO
- A Genome-Wide Metabolic QTL Analysis in Europeans Implicates Two Loci Shaped by Recent Positive Selection
- Bacterial Communities of Diverse Species: Ecological Context of a Host–Microbe Model System
- A Genome-Wide Meta-Analysis of Six Type 1 Diabetes Cohorts Identifies Multiple Associated Loci
- Elongator Complex Influences Telomeric Gene Silencing and DNA Damage Response by Its Role in Wobble Uridine tRNA Modification
- Elevated Proteasome Capacity Extends Replicative Lifespan in
- Genome-Wide Analysis of Heteroduplex DNA in Mismatch Repair–Deficient Yeast Cells Reveals Novel Properties of Meiotic Recombination Pathways
- MicroRNA Predictors of Longevity in
- An Iterative Genetic and Dynamical Modelling Approach Identifies Novel Features of the Gene Regulatory Network Underlying Melanocyte Development
- Atypical AT Skew in Firmicute Genomes Results from Selection and Not from Mutation
- Retrotransposon-Induced Heterochromatin Spreading in the Mouse Revealed by Insertional Polymorphisms
- Genomic Analysis of QTLs and Genes Altering Natural Variation in Stochastic Noise
- The Abnormal Phenotypes of Cartilage and Bone in Calcium-Sensing Receptor Deficient Mice Are Dependent on the Actions of Calcium, Phosphorus, and PTH
- Cell Type–Specific Transcriptome Analysis Reveals a Major Role for and miR-200b in Mouse Inner Ear Morphogenesis
- Essential Roles of BCCIP in Mouse Embryonic Development and Structural Stability of Chromosomes
- IAP1-Mediated Ubiquitylation Controls Activation of the Initiator Caspase DRONC Independent of Protein Degradation
- VANG-1 and PRKL-1 Cooperate to Negatively Regulate Neurite Formation in
- The Receptor Tyrosine Kinase Alk Controls Neurofibromin Functions in Drosophila Growth and Learning
- Comparative and Functional Genomics of PD630 for Biofuels Development
- Identification of Type 1 Diabetes–Associated DNA Methylation Variable Positions That Precede Disease Diagnosis
- PCNA Ubiquitination Is Important, But Not Essential for Translesion DNA Synthesis in Mammalian Cells
- Genetic Effects at Pleiotropic Loci Are Context-Dependent with Consequences for the Maintenance of Genetic Variation in Populations
- Genome-Wide Association Study Identifies Four Loci Associated with Eruption of Permanent Teeth
- Bmp and Nodal Independently Regulate Expression to Maintain Unilateral Nodal Activity during Left-Right Axis Specification in Zebrafish
- Inter-Allelic Prion Propagation Reveals Conformational Relationships among a Multitude of [] Strains
- Emergence and Modular Evolution of a Novel Motility Machinery in Bacteria
- Histone Methyltransferase MET-2 Shields the Male X Chromosome from Checkpoint Machinery and Mediates Meiotic Sex Chromosome Inactivation
- PLOS Genetics
- Archív čísel
- Aktuálne číslo
- Informácie o časopise
Najčítanejšie v tomto čísle- Retrotransposon-Induced Heterochromatin Spreading in the Mouse Revealed by Insertional Polymorphisms
- The Evolutionarily Conserved Longevity Determinants HCF-1 and SIR-2.1/SIRT1 Collaborate to Regulate DAF-16/FOXO
- Genome-Wide Analysis of Heteroduplex DNA in Mismatch Repair–Deficient Yeast Cells Reveals Novel Properties of Meiotic Recombination Pathways
- Association of eGFR-Related Loci Identified by GWAS with Incident CKD and ESRD
Prihlásenie#ADS_BOTTOM_SCRIPTS#Zabudnuté hesloZadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.
- Časopisy