-
Články
- Časopisy
- Kurzy
- Témy
- Kongresy
- Videa
- Podcasty
Statistical Inference on the Mechanisms of Genome Evolution
article has not abstract
Vyšlo v časopise: Statistical Inference on the Mechanisms of Genome Evolution. PLoS Genet 7(6): e32767. doi:10.1371/journal.pgen.1001389
Kategorie: Viewpoints
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1001389Souhrn
article has not abstract
Zdroje
1. ForceA
CreskoW
PickettFB
ProulxS
Amemiya
LynchM
2005 The origin of gene subfunctions and modular gene regulation. Genetics 170 433 446
2. ForceA
LynchM
PickettFB
AmoresA
YanYL
1999 Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151 1531 1545
3. HongX
ScofieldDG
LynchM
2006 Intron size, abundance, and distribution within untranslated regions of genes. Mol Biol Evol 23 2392 2404
4. LynchM
2002 Intron evolution as a population-genetic process. Proc Natl Acad Sci U S A 99 6118 6123
5. LynchM
2006 The origins of eukaryotic gene structure. Mol Biol Evol 23 450 468
6. LynchM
2006 Streamlining and simplification of microbial genome architecture. Ann Rev Microbiol 60 327 349
7. LynchM
2007 The Origins of Genome Architecture. Sunderland Sinauer Associates, Inc. 340
8. LynchM
2007 The evolution of genetic networks by nonadaptive processes. Nat Rev Genet 8 803 813
9. LynchM
2007 The frailty of adaptive hypotheses for the origins of organismal complexity. Proc Natl Acad Sci U S A 104 Suppl 8597 8604
10. LynchM
ConeryJS
2003 The origins of genome complexity. Science 302 1401 1404
11. LynchM
O'HelyM
WalshB
ForceA
2001 The probability of fixation of a newly arisen gene duplicate. Genetics 159 1789 1804
12. LynchM
ScofieldDG
HongX
2005 The evolution of transcription-initiation sites. Mol Biol Evol 22 1137 1146
13. LynchM
KoskellaB
SchaackS
2006 Mutation pressure and the evolution of organelle genome architecture. Science 311 1727 1730
14. LynchM
2008 The cellular, developmental, and population-genetic determinants of mutation-rate evolution. Genetics 180 933 943
15. LynchM
2010 Evolution of the mutation rate. Trends Genet 26 345 352
16. PigliucciM
2007 Postgenomic musings. Science 317 1172 1173
17. GregoryTR
WittJD
2008 Population size and genome size in fishes: a closer look. Genome 51 309 313
18. WhitneyKD
GarlandT
2010 Did genetic drift drive increases in genome complexity? PLoS Genet 6 e1001080 doi:10.1371/journal.pgen.1001080
19. LynchM
WalshJB
1998 Genetics and Analysis of Quantitative Traits. Sunderland Sinauer Assocs, Inc. 980
20. FelsensteinJ
2004 Inferring phylogenies. Sunderland Sinauer Associates, Inc. 664
21. FelsensteinJ
1985 Phylogenies and the comparative method. Am Nat 125 1 15
22. LynchM
1991 Methods for the analysis of comparative data in evolutionary biology. Evolution 45 1065 1080
23. HousworthE
MartinsE
LynchM
2003 The phylogenetic mixed model. Am Nat 163 84 96
24. RicklefsRE
StarckJM
1996 Applications of phylogenetically independent contrasts: a mixed progress report. Oikos 77 167 172
25. BjörklundM
1997 Are ‘comparative methods' always necessary? Oikos 80 607 612
26. RohlfFJ
2006 A comment on phylogenetic correction. Evolution 60 1509 1515
27. HershbergR
PetrovDA
2010 Evidence that mutation is universally biased towards AT in bacteria. PLoS Genet 6 e1001115 doi:10.1371/journal.pgen.1001115
28. HildebrandF
MeyerA
Eyre-WalkerA
2010 Evidence of selection upon genomic GC-content in bacteria. PLoS Genet 6 e1001107 doi:10.1371/journal.pgen.1001107
29. RhoM
ZhouM
GaoX
KimS
TangH
2009 Independent mammalian genome contractions following the KT boundary. Genome Biol Evol 2009 2-12 2 12
30. MartinsEP
Garland
T
1991 Phylogenetic analyses of correlated evolution of continuous characters: a simulation study. Evolution 45 534 557
31. WhitneyKD
BaackEJ
HamrickJL
GodtMJ
2010 A role for nonadaptive processes in plant genome size evolution? Evolution 64 2097 2109
32. KuoCH
MoranNA
OchmanH
2009 The consequences of genetic drift for bacterial genome complexity. Genome Res 19 1450 1454
33. LiW
TuckerAE
SungW
ThomasWK
LynchM
2009 Extensive, recent intron gains in Daphnia populations. Science 326 1260 1262
34. LynchM
2009 Rate, molecular spectrum, and consequences of spontaneous mutations in man. Proc Natl Acad Sci U S A 107 961 968
35. InnanH
KondrashovF
2010 The evolution of gene duplications: classifying and distinguishing between models. Nat Rev Genet 11 97 108
36. CharlesworthB
2008 The origin of genomes – not by natural selection? Curr Biol 18 R140
37. CharlesworthD
2008 Book review: The Origins of Genome Architecture. Genet Res 90 217 219
38. KooninEV
2009 Evolution of genome architecture. Int J Biochem Cell Biol 41 298 306
39. KooninEV
2009 Intron-dominated genomes of early ancestors of eukaryotes. J Hered 100 618 623
40. CharlesworthB
2009 Effective population size and patterns of molecular evolution and variation. Nat Rev Genet 10 195 205
41. AlversonAJ
WeiX
RiceDW
SternDB
BarryK
2010 Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae). Mol Biol Evol 27 1436 1448
42. SloanDB
MacQueenAH
AlversonAJ
PalmerJD
TaylorDR
2010 Extensive loss of RNA editing sites in rapidly evolving silene mitochondrial genomes: selection vs. retroprocessing as the driving force. Genetics 185 1369 1380
43. SmithDR
LeeRW
2009 Nucleotide diversity of the Chlamydomonas reinhardtii plastid genome: addressing the mutational-hazard hypothesis. BMC Evol Biol 9 120
44. SmithDR
LeeRW
2010 Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis. Mol Biol Evol 27 2244 2256
Štítky
Genetika Reprodukčná medicína
Článek Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding SitesČlánek Independent Chromatin Binding of ARGONAUTE4 and SPT5L/KTF1 Mediates Transcriptional Gene SilencingČlánek Trade-Off between Bile Resistance and Nutritional Competence Drives Diversification in the Mouse GutČlánek FGF Signaling Regulates the Number of Posterior Taste Papillae by Controlling Progenitor Field SizeČlánek Mammalian BTBD12 (SLX4) Protects against Genomic Instability during Mammalian SpermatogenesisČlánek Identification of Nine Novel Loci Associated with White Blood Cell Subtypes in a Japanese PopulationČlánek Differential Effects of and Risk Variants on Association with Diabetic ESRD in African AmericansČlánek Dynamic Chromatin Localization of Sirt6 Shapes Stress- and Aging-Related Transcriptional Networks
Článok vyšiel v časopisePLOS Genetics
Najčítanejšie tento týždeň
2011 Číslo 6- Gynekologové a odborníci na reprodukční medicínu se sejdou na prvním virtuálním summitu
- Je „freeze-all“ pro všechny? Odborníci na fertilitu diskutovali na virtuálním summitu
-
Všetky články tohto čísla
- Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding Sites
- Statistical Inference on the Mechanisms of Genome Evolution
- Revisiting Heterochromatin in Embryonic Stem Cells
- A Two-Stage Meta-Analysis Identifies Several New Loci for Parkinson's Disease
- Identification of a Sudden Cardiac Death Susceptibility Locus at 2q24.2 through Genome-Wide Association in European Ancestry Individuals
- Genomic Prevalence of Heterochromatic H3K9me2 and Transcription Do Not Discriminate Pluripotent from Terminally Differentiated Cells
- Epistasis between Beneficial Mutations and the Phenotype-to-Fitness Map for a ssDNA Virus
- Recurrent Chromosome 16p13.1 Duplications Are a Risk Factor for Aortic Dissections
- Telomere DNA Deficiency Is Associated with Development of Human Embryonic Aneuploidy
- Genome-Wide Association Study of White Blood Cell Count in 16,388 African Americans: the Continental Origins and Genetic Epidemiology Network (COGENT)
- Unexpected Role for DNA Polymerase I As a Source of Genetic Variability
- Transportin-SR Is Required for Proper Splicing of Genes and Plant Immunity
- How Chromatin Is Remodelled during DNA Repair of UV-Induced DNA Damage in
- Independent Chromatin Binding of ARGONAUTE4 and SPT5L/KTF1 Mediates Transcriptional Gene Silencing
- Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes
- Natural Allelic Variation Defines a Role for : Trichome Cell Fate Determination
- Multiple Common Susceptibility Variants near BMP Pathway Loci , , and Explain Part of the Missing Heritability of Colorectal Cancer
- Pathogenic Mechanism of the FIG4 Mutation Responsible for Charcot-Marie-Tooth Disease CMT4J
- A Functional Variant in Promoter Modulates Its Expression and Confers Disease Risk for Systemic Lupus Erythematosus
- Drift and Genome Complexity Revisited
- Chromosomal Macrodomains and Associated Proteins: Implications for DNA Organization and Replication in Gram Negative Bacteria
- Trade-Off between Bile Resistance and Nutritional Competence Drives Diversification in the Mouse Gut
- Pathways of Distinction Analysis: A New Technique for Multi–SNP Analysis of GWAS Data
- Web-Based Genome-Wide Association Study Identifies Two Novel Loci and a Substantial Genetic Component for Parkinson's Disease
- Chk2 and p53 Are Haploinsufficient with Dependent and Independent Functions to Eliminate Cells after Telomere Loss
- Exome Sequencing Identifies Mutations in High Myopia
- Distinct Functional Constraints Partition Sequence Conservation in a -Regulatory Element
- CorE from Is a Copper-Dependent RNA Polymerase Sigma Factor
- A Single Sex Pheromone Receptor Determines Chemical Response Specificity of Sexual Behavior in the Silkmoth
- FGF Signaling Regulates the Number of Posterior Taste Papillae by Controlling Progenitor Field Size
- Maps of Open Chromatin Guide the Functional Follow-Up of Genome-Wide Association Signals: Application to Hematological Traits
- Increased Susceptibility to Cortical Spreading Depression in the Mouse Model of Familial Hemiplegic Migraine Type 2
- Differential Gene Expression and Epiregulation of Alpha Zein Gene Copies in Maize Haplotypes
- Parallel Adaptive Divergence among Geographically Diverse Human Populations
- Genetic Analysis of Genome-Scale Recombination Rate Evolution in House Mice
- Mechanisms for the Evolution of a Derived Function in the Ancestral Glucocorticoid Receptor
- Mammalian BTBD12 (SLX4) Protects against Genomic Instability during Mammalian Spermatogenesis
- Interferon Regulatory Factor 8 Regulates Pathways for Antigen Presentation in Myeloid Cells and during Tuberculosis
- High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Arabidopsis Endosperm
- Specific SKN-1/Nrf Stress Responses to Perturbations in Translation Elongation and Proteasome Activity
- Graded Nodal/Activin Signaling Titrates Conversion of Quantitative Phospho-Smad2 Levels into Qualitative Embryonic Stem Cell Fate Decisions
- Genome-Wide Analysis Reveals PADI4 Cooperates with Elk-1 to Activate Expression in Breast Cancer Cells
- Trait Variation in Yeast Is Defined by Population History
- Meiosis-Specific Loading of the Centromere-Specific Histone CENH3 in
- A Genome-Wide Survey of Imprinted Genes in Rice Seeds Reveals Imprinting Primarily Occurs in the Endosperm
- Multiple Regulatory Mechanisms to Inhibit Untimely Initiation of DNA Replication Are Important for Stable Genome Maintenance
- SIRT1 Promotes N-Myc Oncogenesis through a Positive Feedback Loop Involving the Effects of MKP3 and ERK on N-Myc Protein Stability
- Bacteriophage Crosstalk: Coordination of Prophage Induction by Trans-Acting Antirepressors
- Role of the Single-Stranded DNA–Binding Protein SsbB in Pneumococcal Transformation: Maintenance of a Reservoir for Genetic Plasticity
- Genomic Convergence among ERRα, PROX1, and BMAL1 in the Control of Metabolic Clock Outputs
- Genome-Wide Association of Bipolar Disorder Suggests an Enrichment of Replicable Associations in Regions near Genes
- Identification of Nine Novel Loci Associated with White Blood Cell Subtypes in a Japanese Population
- DNA Ligase III Promotes Alternative Nonhomologous End-Joining during Chromosomal Translocation Formation
- Differential Effects of and Risk Variants on Association with Diabetic ESRD in African Americans
- Finished Genome of the Fungal Wheat Pathogen Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
- Dynamic Chromatin Localization of Sirt6 Shapes Stress- and Aging-Related Transcriptional Networks
- Extracellular Matrix Dynamics in Hepatocarcinogenesis: a Comparative Proteomics Study of Transgenic and Null Mouse Models
- Integrating 5-Hydroxymethylcytosine into the Epigenomic Landscape of Human Embryonic Stem Cells
- Vive La Différence: An Interview with Catherine Dulac
- Multiple Loci Are Associated with White Blood Cell Phenotypes
- Nuclear Accumulation of Stress Response mRNAs Contributes to the Neurodegeneration Caused by Fragile X Premutation rCGG Repeats
- A New Mutation Affecting FRQ-Less Rhythms in the Circadian System of
- Cryptic Transcription Mediates Repression of Subtelomeric Metal Homeostasis Genes
- A New Isoform of the Histone Demethylase JMJD2A/KDM4A Is Required for Skeletal Muscle Differentiation
- Genetic Determinants of Lipid Traits in Diverse Populations from the Population Architecture using Genomics and Epidemiology (PAGE) Study
- A Genome-Wide RNAi Screen for Factors Involved in Neuronal Specification in
- PLOS Genetics
- Archív čísel
- Aktuálne číslo
- Informácie o časopise
Najčítanejšie v tomto čísle- Recurrent Chromosome 16p13.1 Duplications Are a Risk Factor for Aortic Dissections
- Statistical Inference on the Mechanisms of Genome Evolution
- Genome-Wide Association Study of White Blood Cell Count in 16,388 African Americans: the Continental Origins and Genetic Epidemiology Network (COGENT)
- Chromosomal Macrodomains and Associated Proteins: Implications for DNA Organization and Replication in Gram Negative Bacteria
Prihlásenie#ADS_BOTTOM_SCRIPTS#Zabudnuté hesloZadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.
- Časopisy