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Meiotic Recombination Intermediates Are Resolved with Minimal Crossover Formation during Return-to-Growth, an Analogue of the Mitotic Cell Cycle


Accurate segregation of homologous chromosomes of different parental origin (homologs) during the first division of meiosis (meiosis I) requires inter-homolog crossovers (COs). These are produced at the end of meiosis I prophase, when recombination intermediates that contain Holliday junctions (joint molecules, JMs) are resolved, predominantly as COs. JM resolution during the mitotic cell cycle is less well understood, mainly due to low levels of inter-homolog JMs. To compare JM resolution during meiosis and the mitotic cell cycle, we used a unique feature of Saccharomyces cerevisiae, return to growth (RTG), where cells undergoing meiosis can be returned to the mitotic cell cycle by a nutritional shift. By performing RTG with ndt80 mutants, which arrest in meiosis I prophase with high levels of interhomolog JMs, we could readily monitor JM resolution during the first cell division of RTG genetically and, for the first time, at the molecular level. In contrast to meiosis, where most JMs resolve as COs, most JMs were resolved during the first 1.5–2 hr after RTG without producing COs. Subsequent resolution of the remaining JMs produced COs, and this CO production required the Mus81/Mms4 structure-selective endonuclease. RTG in sgs1-ΔC795 mutants, which lack the helicase and Holliday junction-binding domains of this BLM homolog, led to a substantial delay in JM resolution; and subsequent JM resolution produced both COs and NCOs. Based on these findings, we suggest that most JMs are resolved during the mitotic cell cycle by dissolution, an Sgs1 helicase-dependent process that produces only NCOs. JMs that escape dissolution are mostly resolved by Mus81/Mms4-dependent cleavage that produces both COs and NCOs in a relatively unbiased manner. Thus, in contrast to meiosis, where JM resolution is heavily biased towards COs, JM resolution during RTG minimizes CO formation, thus maintaining genome integrity and minimizing loss of heterozygosity.


Vyšlo v časopise: Meiotic Recombination Intermediates Are Resolved with Minimal Crossover Formation during Return-to-Growth, an Analogue of the Mitotic Cell Cycle. PLoS Genet 7(5): e32767. doi:10.1371/journal.pgen.1002083
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002083

Souhrn

Accurate segregation of homologous chromosomes of different parental origin (homologs) during the first division of meiosis (meiosis I) requires inter-homolog crossovers (COs). These are produced at the end of meiosis I prophase, when recombination intermediates that contain Holliday junctions (joint molecules, JMs) are resolved, predominantly as COs. JM resolution during the mitotic cell cycle is less well understood, mainly due to low levels of inter-homolog JMs. To compare JM resolution during meiosis and the mitotic cell cycle, we used a unique feature of Saccharomyces cerevisiae, return to growth (RTG), where cells undergoing meiosis can be returned to the mitotic cell cycle by a nutritional shift. By performing RTG with ndt80 mutants, which arrest in meiosis I prophase with high levels of interhomolog JMs, we could readily monitor JM resolution during the first cell division of RTG genetically and, for the first time, at the molecular level. In contrast to meiosis, where most JMs resolve as COs, most JMs were resolved during the first 1.5–2 hr after RTG without producing COs. Subsequent resolution of the remaining JMs produced COs, and this CO production required the Mus81/Mms4 structure-selective endonuclease. RTG in sgs1-ΔC795 mutants, which lack the helicase and Holliday junction-binding domains of this BLM homolog, led to a substantial delay in JM resolution; and subsequent JM resolution produced both COs and NCOs. Based on these findings, we suggest that most JMs are resolved during the mitotic cell cycle by dissolution, an Sgs1 helicase-dependent process that produces only NCOs. JMs that escape dissolution are mostly resolved by Mus81/Mms4-dependent cleavage that produces both COs and NCOs in a relatively unbiased manner. Thus, in contrast to meiosis, where JM resolution is heavily biased towards COs, JM resolution during RTG minimizes CO formation, thus maintaining genome integrity and minimizing loss of heterozygosity.


Zdroje

1. PetronczkiMSiomosMFNasmythK 2003 Un ménage à quatre: the molecular biology of chromosome segregation in meiosis. Cell 112 423 440

2. BergeratAde MassyBGadelleDVaroutasPCNicolasA 1997 An atypical topoisomerase II from Archaea with implications for meiotic recombination. Nature 386 414 417

3. KeeneySGirouxCNKlecknerN 1997 Meiosis-specific DNA double-strand breaks are catalyzed by Spo11, a member of a widely conserved protein family. Cell 88 375 384

4. SunHTrecoDSzostakJW 1991 Extensive 3′-overhanging, single-stranded DNA associated with the meiosis-specific double-strand breaks at the ARG4 recombination initiation site. Cell 64 1155 1161

5. GoldfarbTLichtenM 2010 Frequent and efficient use of the sister chromatid for DNA double-strand break repair during budding yeast meiosis. PLoS Biol 8 e1000520 doi:10.1371/journal.pbio.1000520

6. LaoJPHunterN 2010 Trying to avoid your sister. PLoS Biol 8 e1000519 doi:10.1371/journal.pbio.1000519

7. JessopLAllersTLichtenM 2005 Infrequent co-conversion of markers flanking a meiotic recombination initiation site in Saccharomyces cerevisiae. Genetics 169 1353 1367

8. AllersTLichtenM 2001 Differential timing and control of noncrossover and crossover recombination during meiosis. Cell 106 47 57

9. HunterNKlecknerN 2001 The single-end invasion: an asymmetric intermediate at the double-strand break to double-Holliday junction transition of meiotic recombination. Cell 106 59 70

10. SourirajanALichtenM 2008 Polo-like kinase Cdc5 drives exit from pachytene during budding yeast meiosis. Genes Dev 22 2627 2632

11. SchwachaAKlecknerN 1995 Identification of double Holliday junctions as intermediates in meiotic recombination. Cell 83 783 791

12. ZicklerD 2006 From early homologue recognition to synaptonemal complex formation. Chromosoma 115 158 174

13. LichtenMHaberJE 1989 Position effects in ectopic and allelic mitotic recombination in Saccharomyces cerevisiae. Genetics 123 261 268

14. KadykLCHartwellLH 1992 Sister chromatids are preferred over homologs as substrates for recombinational repair in Saccharomyces cerevisiae. Genetics 132 387 402

15. BzymekMThayerNHOhSDKlecknerNHunterN 2010 Double Holliday junctions are intermediates of DNA break repair. Nature

16. IraGMalkovaALiberiGFoianiMHaberJE 2003 Srs2 and Sgs1-Top3 suppress crossovers during double-strand break repair in yeast. Cell 115 401 411

17. ClyneRKKatisVLJessopLBenjaminKRHerskowitzI 2003 Polo-like kinase Cdc5 promotes chiasmata formation and cosegregation of sister centromeres at meiosis I. Nat Cell Biol 5 480 485

18. Jinks-RobertsonS 2010 Seeking resolution: budding yeast enzymes finally make the cut. Mol Cell 40 858 859

19. BoddyMNGaillardPHMcDonaldWHShanahanPYatesJR 2001 Mus81-Eme1 are essential components of a Holliday junction resolvase. Cell 107 537 548

20. KaliramanVMullenJRFrickeWMBastin-ShanowerSABrillSJ 2001 Functional overlap between Sgs1-Top3 and the Mms4-Mus81 endonuclease. Genes Dev 15 2730 2740

21. CicciaAConstantinouAWestSC 2003 Identification and characterization of the human Mus81-Eme1 endonuclease. J Biol Chem 278 25172 25178

22. OsmanFDixonJDoeCLWhitbyMC 2003 Generating crossovers by resolution of nicked Holliday junctions: a role for Mus81-Eme1 in meiosis. Mol Cell 12 761 774

23. SmithGRBoddyMNShanahanPRussellP 2003 Fission yeast Mus81.Eme1 Holliday junction resolvase is required for meiotic crossing over but not for gene conversion. Genetics 165 2289 2293

24. CromieGAHyppaRWTaylorAFZakharyevichKHunterN 2006 Single Holliday junctions are intermediates of meiotic recombination. Cell 127 1167 1178

25. InterthalHHeyerWD 2000 MUS81 encodes a novel helix-hairpin-helix protein involved in the response to UV- and methylation-induced DNA damage in Saccharomyces cerevisiae. Mol Gen Genet 263 812 827

26. de los SantosTLoidlJLarkinBHollingsworthNM 2001 A role for MMS4 in the processing of recombination intermediates during meiosis in Saccharomyces cerevisiae. Genetics 159 1511 1525

27. de los SantosTHunterNLeeCLarkinBLoidlJ 2003 The Mus81/Mms4 endonuclease acts independently of double-Holliday junction resolution to promote a distinct subset of crossovers during meiosis in budding yeast. Genetics 164 81 94

28. JessopLLichtenM 2008 Mus81/Mms4 endonuclease and Sgs1 helicase collaborate to ensure proper recombination intermediate metabolism during meiosis. Mol Cell 31 313 323

29. OhSDLaoJPTaylorAFSmithGRHunterN 2008 RecQ helicase, Sgs1, and XPF family endonuclease, Mus81-Mms4, resolve aberrant joint molecules during meiotic recombination. Mol Cell 31 324 336

30. HoCKMazonGLamAFSymingtonLS 2010 Mus81 and Yen1 promote reciprocal exchange during mitotic recombination to maintain genome integrity in budding yeast. Mol Cell 40 988 1000

31. NasmythKA 1982 Molecular genetics of yeast mating type. Annu Rev Genet 16 439 500

32. GilbertsonLAStahlFW 1996 A test of the double-strand break repair model for meiotic recombination in Saccharomyces cerevisiae. Genetics 144 27 41

33. WuLHicksonID 2003 The Bloom's syndrome helicase suppresses crossing over during homologous recombination. Nature 426 870 874

34. PlankJLWuJHsiehTS 2006 Topoisomerase IIIα and Bloom's helicase can resolve a mobile double Holliday junction substrate through convergent branch migration. Proc Natl Acad Sci U S A 103 11118 11123

35. WuLHicksonID 2002 The Bloom's syndrome helicase stimulates the activity of human topoisomerase IIIα. Nucleic Acids Res 30 4823 4829

36. CejkaPPlankJLBachratiCZHicksonIDKowalczykowskiSC 2010 Rmi1 stimulates decatenation of double Holliday junctions during dissolution by Sgs1-Top3. Nat Struct Mol Biol 17 1377 1382

37. ChagantiRSSchonbergSGermanJ 1974 A manyfold increase in sister chromatid exchanges in Bloom's syndrome lymphocytes. Proc Natl Acad Sci U S A 71 4508 4512

38. HicksonID 2003 RecQ helicases: caretakers of the genome. Nat Rev Cancer 3 169 178

39. MankouriHWHicksonID 2004 Understanding the roles of RecQ helicases in the maintenance of genome integrity and suppression of tumorigenesis. Biochem Soc Trans 32 957 958

40. RockmillBFungJCBrandaSSRoederGS 2003 The Sgs1 helicase regulates chromosome synapsis and meiotic crossing over. Curr Biol 13 1954 1962

41. OhSDLaoJPHwangPYTaylorAFSmithGR 2007 BLM ortholog, Sgs1, prevents aberrant crossing-over by suppressing formation of multichromatid joint molecules. Cell 130 259 272

42. JessopLRockmillBRoederGSLichtenM 2006 Meiotic chromosome synapsis-promoting proteins antagonize the anti-crossover activity of Sgs1. PLoS Genet 2 e155 doi:10.1371/journal.pgen.0020155

43. van BrabantAJYeTSanzMGermanIJEllisNA 2000 Binding and melting of D-loops by the Bloom syndrome helicase. Biochemistry 39 14617 14625

44. BachratiCZBortsRHHicksonID 2006 Mobile D-loops are a preferred substrate for the Bloom's syndrome helicase. Nucleic Acids Res 34 2269 2279

45. EspositoMS 1978 Evidence that spontaneous mitotic recombination occurs at the two-strand stage. Proc Natl Acad Sci U S A 75 4436 4440

46. ZouHRothsteinR 1997 Holliday junctions accumulate in replication mutants via a RecA homolog-independent mechanism. Cell 90 87 96

47. LiberiGMaffiolettiGLuccaCChioloIBaryshnikovaA 2005 Rad51-dependent DNA structures accumulate at damaged replication forks in sgs1 mutants defective in the yeast ortholog of BLM RecQ helicase. Genes Dev 19 339 350

48. ChuSHerskowitzI 1998 Gametogenesis in yeast is regulated by a transcriptional cascade dependent on Ndt80. Mol Cell 1 685 696

49. XuLAjimuraMPadmoreRKleinCKlecknerN 1995 NDT80, a meiosis-specific gene required for exit from pachytene in Saccharomyces cerevisiae. Mol Cell Biol 15 6572 6581

50. GanesanATHolterHRobertsC 1958 Some observations on sporulation in Saccharomyces. C R Trav Lab Carlsberg Chim 31 1 6

51. ShermanFRomanH 1963 Evidence for two types of allelic recombination in yeast. Genetics 48 255 261

52. SimchenGPinonRSaltsY 1972 Sporulation in Saccharomyces cerevisiae: premeiotic DNA synthesis, readiness and commitment. Exp Cell Res 75 207 218

53. EspositoREEspositoMS 1974 Genetic recombination and commitment to meiosis in Saccharomyces. Proc Natl Acad Sci U S A 71 3172 3176

54. HonigbergSMConicellaCEspositioRE 1992 Commitment to meiosis in Saccharomyces cerevisiae: involvement of the SPO14 gene. Genetics 130 703 716

55. HonigbergSMEspositoRE 1994 Reversal of cell determination in yeast meiosis: postcommitment arrest allows return to mitotic growth. Proc Natl Acad Sci U S A 91 6559 6563

56. ZenvirthDLoidlJKleinSArbelAShemeshR 1997 Switching yeast from meiosis to mitosis: double-strand break repair, recombination and synaptonemal complex. Genes Cells 2 487 498

57. FriedlanderGJoseph-StraussDCarmiMZenvirthDSimchenG 2006 Modulation of the transcription regulatory program in yeast cells committed to sporulation. Genome Biol 7 R20

58. SimchenG 2009 Commitment to meiosis: what determines the mode of division in budding yeast? Bioessays 31 169 177

59. MoensPBMowatMEspositoMSEspositoRE 1977 Meiosis in a temperature-sensitive DNA-synthesis mutant and in an apomictic yeast strain (Saccharomyces cerevisiae). Philos Trans R Soc Lond B Biol Sci 277 351 358

60. KlapholzSWaddellCSEspositoRE 1985 The role of the SPO11 gene in meiotic recombination in yeast. Genetics 110 187 216

61. SymMEngebrechtJARoederGS 1993 ZIP1 is a synaptonemal complex protein required for meiotic chromosome synapsis. Cell 72 365 378

62. MortimerRKHawthorneDC 1966 Genetic mapping in Saccharomyces. Genetics 53 165 173

63. WilliamsonDH 1965 The timing of deoxyribonucleic acid synthesis in the cell cycle of Saccharomyces cerevisiae. J Cell Biol 25 517 528

64. MichaelisCCioskRNasmythK 1997 Cohesins: chromosomal proteins that prevent premature separation of sister chromatids. Cell 91 35 45

65. LeeBHKiburzBMAmonA 2004 Spo13 maintains centromeric cohesion and kinetochore coorientation during meiosis I. Curr Biol 14 2168 2182

66. JinQTrelles-StickenEScherthanHLoidlJ 1998 Yeast nuclei display prominent centromere clustering that is reduced in nondividing cells and in meiotic prophase. J Cell Biol 141 21 29

67. BenjaminKRZhangCShokatKMHerskowitzI 2003 Control of landmark events in meiosis by the CDK Cdc28 and the meiosis-specific kinase Ime2. Genes Dev 17 1524 1539

68. CarlileTMAmonA 2008 Meiosis I is established through division-specific translational control of a cyclin. Cell 133 280 291

69. ChuaPJinks-RobertsonS 1991 Segregation of recombinant chromatids following mitotic crossing over in yeast. Genetics 129 359 369

70. ChuSDeRisiJEisenMMulhollandJBotsteinD 1998 The transcriptional program of sporulation in budding yeast. Science 282 699 705

71. GrandinNReedSI 1993 Differential function and expression of Saccharomyces cerevisiae B-type cyclins in mitosis and meiosis. Mol Cell Biol 13 2113 2125

72. GaskellLJOsmanFGilbertRJWhitbyMC 2007 Mus81 cleavage of Holliday junctions: a failsafe for processing meiotic recombination intermediates? EMBO J 26 1891 1901

73. MullenJRKaliramanVBrillSJ 2000 Bipartite structure of the SGS1 DNA helicase in Saccharomyces cerevisiae. Genetics 154 1101 1114

74. WuLChanKLRalfCBernsteinDAGarciaPL 2005 The HRDC domain of BLM is required for the dissolution of double Holliday junctions. EMBO J 24 2679 2687

75. PrakashRSatoryDDrayEPapushaASchellerJ 2009 Yeast Mph1 helicase dissociates Rad51-made D-loops: implications for crossover control in mitotic recombination. Genes Dev 23 67 79

76. DahmannCDiffleyJFNasmythKA 1995 S-phase-promoting cyclin-dependent kinases prevent re-replication by inhibiting the transition of replication origins to a pre-replicative state. Curr Biol 5 1257 1269

77. NguyenVQCoCLiJJ 2001 Cyclin-dependent kinases prevent DNA re-replication through multiple mechanisms. Nature 411 1068 1073

78. SawarynskiKENajorNAKepselACBrushGS 2009 Sic1-induced DNA rereplication during meiosis. Proc Natl Acad Sci U S A 106 232 237

79. TothARabitschKPGalovaMSchleifferABuonomoSB 2000 Functional genomics identifies monopolin: a kinetochore protein required for segregation of homologs during meiosis i. Cell 103 1155 1168

80. RabitschKPPetronczkiMJaverzatJPGenierSChwallaB 2003 Kinetochore recruitment of two nucleolar proteins is required for homolog segregation in meiosis I. Dev Cell 4 535 548

81. LeeBHAmonA 2003 Role of Polo-like kinase CDC5 in programming meiosis I chromosome segregation. Science 300 482 486

82. MatosJLippJJBogdanovaAGuillotSOkazE 2008 Dbf4-dependent CDC7 kinase links DNA replication to the segregation of homologous chromosomes in meiosis I. Cell 135 662 678

83. SzostakJWOrr-WeaverTLRothsteinRJStahlFW 1983 The double-strand-break repair model for recombination. Cell 33 25 35

84. LipkinSMMoensPBWangVLenziMShanmugarajahD 2002 Meiotic arrest and aneuploidy in MLH3-deficient mice. Nat Genet 31 385 390

85. MarconEMoensP 2003 MLH1p and MLH3p localize to precociously induced chiasmata of okadaic-acid-treated mouse spermatocytes. Genetics 165 2283 2287

86. HoffmannERBortsRH 2004 Meiotic recombination intermediates and mismatch repair proteins. Cytogenet Genome Res 107 232 248

87. WangTFKlecknerNHunterN 1999 Functional specificity of MutL homologs in yeast: evidence for three Mlh1-based heterocomplexes with distinct roles during meiosis in recombination and mismatch correction. Proc Natl Acad Sci U S A 96 13914 13919

88. ZakharyevichKMaYTangSHwangPYBoiteuxS 2010 Temporally and biochemically distinct activities of Exo1 during meiosis: double-strand break resection and resolution of double Holliday junctions. Mol Cell 40 1001 1015

89. TrowbridgeKMcKimKBrillSJSekelskyJ 2007 Synthetic lethality of Drosophila in the absence of the MUS81 endonuclease and the DmBlm helicase is associated with elevated apoptosis. Genetics 176 1993 2001

90. HigginsJDBucklingEFFranklinFCJonesGH 2008 Expression and functional analysis of AtMUS81 in Arabidopsis meiosis reveals a role in the second pathway of crossing-over. Plant J 54 152 162

91. HollowayJKBoothJEdelmannWMcGowanCHCohenPE 2008 MUS81 generates a subset of MLH1-MLH3-independent crossovers in mammalian meiosis. PLoS Genet 4 e1000186 doi:10.1371/journal.pgen.1000186

92. GaillardPHNoguchiEShanahanPRussellP 2003 The endogenous Mus81-Eme1 complex resolves Holliday junctions by a nick and counternick mechanism. Mol Cell 12 747 759

93. EhmsenKTHeyerWD 2008 Saccharomyces cerevisiae Mus81-Mms4 is a catalytic, DNA structure-selective endonuclease. Nucleic Acids Res 36 2182 2195

94. AshtonTMMankouriHWHeidenblutAMcHughPJHicksonID 2011 Pathways for Holliday junction processing during homologous recombination in Saccharomyces cerevisiae. Mol Cell Biol in press

95. HollingsworthNMBrillSJ 2004 The Mus81 solution to resolution: generating meiotic crossovers without Holliday junctions. Genes Dev 18 117 125

96. KaneSMRothR 1974 Carbohydrate metabolism during ascospore development in yeast. J Bacteriol 118 8 14

97. ChaRSWeinerBMKeeneySDekkerJKlecknerN 2000 Progression of meiotic DNA replication is modulated by interchromosomal interaction proteins, negatively by Spo11p and positively by Rec8p. Genes Dev 14 493 503

98. GuthrieCFinkGR 1991 Guide to yeast genetics and molecular biology. San Diego Academic Press

99. GoyonCLichtenM 1993 Timing of molecular events in meiosis in Saccharomyces cerevisiae: stable heteroduplex DNA is formed late in meiotic prophase. Mol Cell Biol 13 373 382

100. BishopDK 1994 RecA homologs Dmc1 and Rad51 interact to form multiple nuclear complexes prior to meiotic chromosome synapsis. Cell 79 1081 1092

101. AllersTLichtenM 2000 A method for preparing genomic DNA that restrains branch migration of Holliday junctions. Nucleic Acids Res 28 e6

102. FoianiMMariniFGambaDLucchiniGPlevaniP 1994 The B subunit of the DNA polymerase alpha-primase complex in Saccharomyces cerevisiae executes an essential function at the initial stage of DNA replication. Mol Cell Biol 14 923 933

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