#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Brd4 Is Displaced from HPV Replication Factories as They Expand and Amplify Viral DNA


Replication foci are generated by many viruses to concentrate and localize viral DNA synthesis to specific regions of the cell. Expression of the HPV16 E1 and E2 replication proteins in keratinocytes results in nuclear foci that recruit proteins associated with the host DNA damage response. We show that the Brd4 protein localizes to these foci and is essential for their formation. However, when E1 and E2 begin amplifying viral DNA, Brd4 is displaced from the foci and cellular factors associated with DNA synthesis and homologous recombination are recruited. Differentiated HPV-infected keratinocytes form similar nuclear foci that contain amplifying viral DNA. We compare the different foci and show that, while they have many characteristics in common, there is a switch between early Brd4-dependent foci and mature Brd4-independent replication foci. However, HPV genomes encoding mutated E2 proteins that are unable to bind Brd4 can replicate and amplify the viral genome. We propose that, while E1, E2 and Brd4 might bind host chromatin at early stages of infection, there is a temporal and functional switch at later stages and increased E1 and E2 levels promote viral DNA amplification, displacement of Brd4 and growth of a replication factory. The concomitant DNA damage response recruits proteins required for DNA synthesis and repair, which could then be utilized for viral DNA replication. Hence, while Brd4 can enhance replication by concentrating viral processes in specific regions of the host nucleus, this interaction is not absolutely essential for HPV replication.


Vyšlo v časopise: Brd4 Is Displaced from HPV Replication Factories as They Expand and Amplify Viral DNA. PLoS Pathog 9(11): e32767. doi:10.1371/journal.ppat.1003777
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.ppat.1003777

Souhrn

Replication foci are generated by many viruses to concentrate and localize viral DNA synthesis to specific regions of the cell. Expression of the HPV16 E1 and E2 replication proteins in keratinocytes results in nuclear foci that recruit proteins associated with the host DNA damage response. We show that the Brd4 protein localizes to these foci and is essential for their formation. However, when E1 and E2 begin amplifying viral DNA, Brd4 is displaced from the foci and cellular factors associated with DNA synthesis and homologous recombination are recruited. Differentiated HPV-infected keratinocytes form similar nuclear foci that contain amplifying viral DNA. We compare the different foci and show that, while they have many characteristics in common, there is a switch between early Brd4-dependent foci and mature Brd4-independent replication foci. However, HPV genomes encoding mutated E2 proteins that are unable to bind Brd4 can replicate and amplify the viral genome. We propose that, while E1, E2 and Brd4 might bind host chromatin at early stages of infection, there is a temporal and functional switch at later stages and increased E1 and E2 levels promote viral DNA amplification, displacement of Brd4 and growth of a replication factory. The concomitant DNA damage response recruits proteins required for DNA synthesis and repair, which could then be utilized for viral DNA replication. Hence, while Brd4 can enhance replication by concentrating viral processes in specific regions of the host nucleus, this interaction is not absolutely essential for HPV replication.


Zdroje

1. BedellMA, HudsonJB, GolubTR, TurykME, HoskenM, et al. (1991) Amplification of human papillomavirus genomes in vitro is dependent on epithelial differentiation. J Virol 65: 2254–2260.

2. McBrideAA, JangMK (2013) Current understanding of the role of the Brd4 protein in the papillomavirus lifecycle. Viruses 5: 1374–1394.

3. WuSY, ChiangCM (2007) The double bromodomain-containing chromatin adaptor Brd4 and transcriptional regulation. J Biol Chem 282: 13141–13145.

4. SakakibaraN, MitraR, McBrideAA (2011) The papillomavirus E1 helicase activates a cellular DNA damage response in viral replication foci. J Virol 85: 8981–8995.

5. ReinsonT, TootsM, KadajaM, PipitchR, AllikM, et al. (2013) Engagement of the ATR-Dependent DNA Damage Response at the Human Papillomavirus 18 Replication Centers during the Initial Amplification. J Virol 87: 951–964.

6. Fradet-TurcotteA, Bergeron-LabrecqueF, MoodyCA, LehouxM, LaiminsLA, et al. (2011) Nuclear accumulation of the papillomavirus E1 helicase blocks S-phase progression and triggers an ATM-dependent DNA damage response. J Virol 85: 8996–9012.

7. ChaurushiyaMS, WeitzmanMD (2009) Viral manipulation of DNA repair and cell cycle checkpoints. DNA Repair (Amst) 8: 1166–1176.

8. SakakibaraN, ChenD, McBrideAA (2013) Papillomaviruses use recombination-dependent replication to vegetatively amplify their genomes in differentiated cells. PLoS Pathog 9: e1003321.

9. MoodyCA, LaiminsLA (2009) Human Papillomaviruses Activate the ATM DNA Damage Pathway for Viral Genome Amplification upon Differentiation. Plos Pathogens 5: e1000605.

10. GillespieKA, MehtaKP, LaiminsLA, MoodyCA (2012) Human papillomaviruses recruit cellular DNA repair and homologous recombination factors to viral replication centers. J Virol 86: 9520–9526.

11. YouJ, CroyleJL, NishimuraA, OzatoK, HowleyPM (2004) Interaction of the bovine papillomavirus E2 protein with Brd4 tethers the viral DNA to host mitotic chromosomes. Cell 117: 349–360.

12. SenechalH, PoirierGG, CoulombeB, LaiminsLA, ArchambaultJ (2007) Amino acid substitutions that specifically impair the transcriptional activity of papillomavirus E2 affect binding to the long isoform of Brd4. Virology 358: 10–17.

13. BaxterMK, McPhillipsMG, OzatoK, McBrideAA (2005) The mitotic chromosome binding activity of the papillomavirus E2 protein correlates with interaction with the cellular chromosomal protein, Brd4. J Virol 79: 4806–4818.

14. McPhillipsMG, OliveiraJG, SpindlerJE, MitraR, McBrideAA (2006) Brd4 is required for e2-mediated transcriptional activation but not genome partitioning of all papillomaviruses. J Virol 80: 9530–9543.

15. SchweigerMR, YouJ, HowleyPM (2006) Bromodomain protein 4 mediates the papillomavirus e2 transcriptional activation function. J Virol 80: 4276–4285.

16. LeeAY, ChiangCM (2009) Chromatin adaptor Brd4 modulates E2 transcription activity and protein stability. J Biol Chem 284: 2778–2786.

17. MullerM, JacobY, JonesL, WeissA, BrinoL, et al. (2012) Large scale genotype comparison of human papillomavirus E2-host interaction networks provides new insights for e2 molecular functions. PLoS Pathog 8: e1002761.

18. McPhillipsMG, OzatoK, McBrideAA (2005) Interaction of bovine papillomavirus E2 protein with Brd4 stabilizes its association with chromatin. J Virol 79: 8920–8932.

19. OliveiraJG, ColfLA, McBrideAA (2006) Variations in the association of papillomavirus E2 proteins with mitotic chromosomes. Proc Natl Acad Sci U S A 103: 1047–1052.

20. McBrideAA, OliveiraJG, McPhillipsMG (2006) Partitioning viral genomes in mitosis: same idea, different targets. Cell Cycle 5: 1499–1502.

21. HummelM, HudsonJB, LaiminsLA (1992) Differentiation-induced and constitutive transcription of human papillomavirus type 31b in cell lines containing viral episomes. J Virol 66: 6070–6080.

22. MeyersC, FrattiniMG, HudsonJB, LaiminsLA (1992) Biosynthesis of human papillomavirus from a continuous cell line upon epithelial differentiation. Science 257: 971–973.

23. RueschMN, StubenrauchF, LaiminsLA (1998) Activation of papillomavirus late gene transcription and genome amplification upon differentiation in semisolid medium is coincident with expression of involucrin and transglutaminase but not keratin-10. J Virol 72: 5016–5024.

24. MoodyCA, Fradet-TurcotteA, ArchambaultJ, LaiminsLA (2007) Human papillomaviruses activate caspases upon epithelial differentiation to induce viral genome amplification. Proc Natl Acad Sci U S A 104: 19541–19546.

25. DeyA, ChitsazF, AbbasiA, MisteliT, OzatoK (2003) The double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosis. Proc Natl Acad Sci U S A 100: 8758–8763.

26. HeintzmanND, StuartRK, HonG, FuY, ChingCW, et al. (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39: 311–318.

27. FilippakopoulosP, QiJ, PicaudS, ShenY, SmithWB, et al. (2010) Selective inhibition of BET bromodomains. Nature 468: 1067–1073.

28. NicodemeE, JeffreyKL, SchaeferU, BeinkeS, DewellS, et al. (2010) Suppression of inflammation by a synthetic histone mimic. Nature 468: 1119–1123.

29. NorrisKL, LeeJY, YaoTP (2009) Acetylation goes global: the emergence of acetylation biology. Sci Signal 2: pe76.

30. ClaytonAL, HazzalinCA, MahadevanLC (2006) Enhanced histone acetylation and transcription: a dynamic perspective. Mol Cell 23: 289–296.

31. WuSY, LeeAY, HouSY, KemperJK, Erdjument-BromageH, et al. (2006) Brd4 links chromatin targeting to HPV transcriptional silencing. Genes Dev 20: 2383–2396.

32. SchweigerMR, OttingerM, YouJ, HowleyPM (2007) Brd4 independent transcriptional repression function of the papillomavirus E2 proteins. J Virol 81: 9612–9622.

33. StubenrauchF, ColbertAM, LaiminsLA (1998) Transactivation by the E2 protein of oncogenic human papillomavirus type 31 is not essential for early and late viral functions. J Virol 72: 8115–8123.

34. JeonS, AllenhoffmannBL, LambertPF (1995) Integration of Human Papillomavirus Type-16 into the Human Genome Correlates with a Selective Growth Advantage of Cells. Journal of Virology 69: 2989–2997.

35. JangMK, KwonD, McBrideAA (2009) Papillomavirus E2 proteins and the host BRD4 protein associate with transcriptionally active cellular chromatin. J Virol 83: 2592–2600.

36. Fradet-TurcotteA, MoodyC, LaiminsLA, ArchambaultJ (2010) Nuclear export of human papillomavirus type 31 E1 is regulated by Cdk2 phosphorylation and required for viral genome maintenance. J Virol 84: 11747–11760.

37. NakaharaT, PehWL, DoorbarJ, LeeD, LambertPF (2005) Human papillomavirus type 16 E1∧E4 contributes to multiple facets of the papillomavirus life cycle. J Virol 79: 13150–13165.

38. BanerjeeNS, WangHK, BrokerTR, ChowLT (2011) Human papillomavirus (HPV) E7 induces prolonged G2 following S phase reentry in differentiated human keratinocytes. J Biol Chem 286: 15473–15482.

39. FloydSR, PacoldME, HuangQ, ClarkeSM, LamFC, et al. (2013) The bromodomain protein Brd4 insulates chromatin from DNA damage signalling. Nature 498: 246–250.

40. ChoiS, BakkenistCJ (2013) Brd4 Shields Chromatin from ATM Kinase Signaling Storms. Sci Signal 6: pe30.

41. SmithPP, FriedmanCL, BryantEM, McDougallJK (1992) Viral integration and fragile sites in human papillomavirus-immortalized human keratinocyte cell lines. Genes, chromosomes & cancer 5: 150–157.

42. LetessierA, MillotGA, KoundrioukoffS, LachagesAM, VogtN, et al. (2011) Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site. Nature 470: 120–123.

43. AlderbornA, JareborgN, BurnettS (1992) Evidence that the transcriptional trans-activating function of the bovine papillomavirus type 1 E2 gene is not required for viral DNA amplification in division-arrested cells. J Gen Virol 73: 2639–2651.

44. SakaiH, YasugiT, BensonJD, DowhanickJJ, HowleyPM (1996) Targeted mutagenesis of the human papillomavirus type 16 E2 transactivation domain reveals separable transcriptional activation and DNA replication functions. J Virol 70: 1602–1611.

45. AbroiA, KurgR, UstavM (1996) Transcriptional and replicational activation functions in the BPV1 E2 protein are encoded by different structural determinants. J Virol 70: 6169–6179.

46. IlvesI, MaemetsK, SillaT, JaniksonK, UstavM (2006) Brd4 is involved in multiple processes of the bovine papillomavirus type 1 life cycle. J Virol 80: 3660–3665.

47. IlvesI, KiviS, UstavM (1999) Long-term episomal maintenance of bovine papillomavirus type 1 plasmids is determined by attachment to host chromosomes, which is mediated by the viral E2 protein and its binding sites. Journal of Virology 73: 4404–4412.

48. AbbateEA, BergerJM, BotchanMR (2004) The X-ray structure of the papillomavirus helicase in complex with its molecular matchmaker E2. Genes Dev 18: 1981–1996.

49. AbbateEA, VoitenleitnerC, BotchanMR (2006) Structure of the papillomavirus DNA-tethering complex E2:Brd4 and a peptide that ablates HPV chromosomal association. Mol Cell 24: 877–889.

50. WuSY, LeeAY, LaiHT, ZhangH, ChiangCM (2013) Phospho switch triggers brd4 chromatin binding and activator recruitment for gene-specific targeting. Mol Cell 49: 843–857.

51. WangX, LiJ, SchowalterRM, JiaoJ, BuckCB, et al. (2012) Bromodomain Protein Brd4 Plays a Key Role in Merkel Cell Polyomavirus DNA Replication. PLoS pathogens 8: e1003021.

52. ZhaoR, NakamuraT, FuY, LazarZ, SpectorDL (2011) Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation. Nat Cell Biol 13: 1295–1304.

53. FerrariR, BerkAJ, KurdistaniSK (2009) Viral manipulation of the host epigenome for oncogenic transformation. Nat Rev Genet 10: 290–294.

54. FloresER, LambertPF (1997) Evidence for a switch in the mode of human papillomavirus type 16 DNA replication during the viral life cycle. J Virol 71: 7167–7179.

55. ThomasJT, HubertWG, RueschMN, LaiminsLA (1999) Human papillomavirus type 31 oncoproteins E6 and E7 are required for the maintenance of episomes during the viral life cycle in normal human keratinocytes. Proc Natl Acad Sci U S A 96: 8449–8454.

56. ParkRB, AndrophyEJ (2002) Genetic analysis of high-risk e6 in episomal maintenance of human papillomavirus genomes in primary human keratinocytes. J Virol 76: 11359–11364.

57. OhST, LongworthMS, LaiminsLA (2004) Roles of the E6 and E7 proteins in the life cycle of low-risk human papillomavirus type 11. J Virol 78: 2620–2626.

58. HongS, LaiminsLA (2013) The JAK-STAT Transcriptional Regulator, STAT-5, Activates the ATM DNA Damage Pathway to Induce HPV 31 Genome Amplification upon Epithelial Differentiation. PLoS pathogens 9: e1003295.

59. BesterAC, RonigerM, OrenYS, ImMM, SarniD, et al. (2011) Nucleotide deficiency promotes genomic instability in early stages of cancer development. Cell 145: 435–446.

60. WangX, HelferCM, PancholiN, BradnerJE, YouJ (2013) Recruitment of brd4 to the human papillomavirus type 16 DNA replication complex is essential for replication of viral DNA. J Virol 87: 3871–3884.

61. MaruyamaT, FarinaA, DeyA, CheongJ, BermudezVP, et al. (2002) A Mammalian bromodomain protein, Brd4, interacts with replication factor C and inhibits progression to S phase. Mol Cell Biol 22: 6509–6520.

62. RahmanS, SowaME, OttingerM, SmithJA, ShiY, et al. (2011) The Brd4 extraterminal domain confers transcription activation independent of pTEFb by recruiting multiple proteins, including NSD3. Mol Cell Biol 31: 2641–2652.

63. Van DoorslaerK, TanQ, XirasagarS, BandaruS, GopalanV, et al. (2013) The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis. Nucleic Acids Res 41: D571–578.

64. DowhanickJJ, McBrideAA, HowleyPM (1995) Suppression of cellular proliferation by the papillomavirus E2 protein. J Virol 69: 7791–7799.

65. ThierryF, YanivM (1987) The BPV1-E2 trans-acting protein can be either an activator or a repressor of the HPV18 regulatory region. EMBO J 6: 3391–3397.

66. SmithJA, WhiteEA, SowaME, PowellML, OttingerM, et al. (2010) Genome-wide siRNA screen identifies SMCX, EP400, and Brd4 as E2-dependent regulators of human papillomavirus oncogene expression. Proc Natl Acad Sci U S A 107: 3752–3757.

67. EvansMF, AlieskyHA, CooperK (2003) Optimization of biotinyl-tyramide-based in situ hybridization for sensitive background-free applications on formalin-fixed, paraffin-embedded tissue specimens. BMC Clin Pathol 3: 2.

68. Del VecchioAM, RomanczukH, HowleyPM, BakerCC (1992) Transient replication of human papillomavirus DNAs. J Virol 66: 5949–5958.

69. BoshartM, GissmannL, IkenbergH, KleinheinzA, ScheurlenW, et al. (1984) A new type of papillomavirus DNA, its presence in genital cancer biopsies and in cell lines derived from cervical cancer. EMBO J 3: 1151–1157.

70. ChapmanS, LiuX, MeyersC, SchlegelR, McBrideAA (2010) Human keratinocytes are efficiently immortalized by a Rho kinase inhibitor. J Clin Invest 120: 2619–2626.

71. Gosmini RLM, Mirguet O (2011) Benzodiazepine Bromodomain Inhibitor. WO Patent 2,011,054,553.

Štítky
Hygiena a epidemiológia Infekčné lekárstvo Laboratórium

Článok vyšiel v časopise

PLOS Pathogens


2013 Číslo 11
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Získaná hemofilie - Povědomí o nemoci a její diagnostika
nový kurz

Eozinofilní granulomatóza s polyangiitidou
Autori: doc. MUDr. Martina Doubková, Ph.D.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#