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Distinct Cdk1 Requirements during Single-Strand Annealing, Noncrossover, and Crossover Recombination
Repair of DNA double-strand breaks (DSBs) by homologous recombination (HR) in haploid cells is generally restricted to S/G2 cell cycle phases, when DNA has been replicated and a sister chromatid is available as a repair template. This cell cycle specificity depends on cyclin-dependent protein kinases (Cdk1 in Saccharomyces cerevisiae), which initiate HR by promoting 5′–3′ nucleolytic degradation of the DSB ends. Whether Cdk1 regulates other HR steps is unknown. Here we show that yku70Δ cells, which accumulate single-stranded DNA (ssDNA) at the DSB ends independently of Cdk1 activity, are able to repair a DSB by single-strand annealing (SSA) in the G1 cell cycle phase, when Cdk1 activity is low. This ability to perform SSA depends on DSB resection, because both resection and SSA are enhanced by the lack of Rad9 in yku70Δ G1 cells. Furthermore, we found that interchromosomal noncrossover recombinants are generated in yku70Δ and yku70Δ rad9Δ G1 cells, indicating that DSB resection bypasses Cdk1 requirement also for carrying out these recombination events. By contrast, yku70Δ and yku70Δ rad9Δ cells are specifically defective in interchromosomal crossover recombination when Cdk1 activity is low. Thus, Cdk1 promotes DSB repair by single-strand annealing and noncrossover recombination by acting mostly at the resection level, whereas additional events require Cdk1-dependent regulation in order to generate crossover outcomes.
Vyšlo v časopise: Distinct Cdk1 Requirements during Single-Strand Annealing, Noncrossover, and Crossover Recombination. PLoS Genet 7(8): e32767. doi:10.1371/journal.pgen.1002263
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002263Souhrn
Repair of DNA double-strand breaks (DSBs) by homologous recombination (HR) in haploid cells is generally restricted to S/G2 cell cycle phases, when DNA has been replicated and a sister chromatid is available as a repair template. This cell cycle specificity depends on cyclin-dependent protein kinases (Cdk1 in Saccharomyces cerevisiae), which initiate HR by promoting 5′–3′ nucleolytic degradation of the DSB ends. Whether Cdk1 regulates other HR steps is unknown. Here we show that yku70Δ cells, which accumulate single-stranded DNA (ssDNA) at the DSB ends independently of Cdk1 activity, are able to repair a DSB by single-strand annealing (SSA) in the G1 cell cycle phase, when Cdk1 activity is low. This ability to perform SSA depends on DSB resection, because both resection and SSA are enhanced by the lack of Rad9 in yku70Δ G1 cells. Furthermore, we found that interchromosomal noncrossover recombinants are generated in yku70Δ and yku70Δ rad9Δ G1 cells, indicating that DSB resection bypasses Cdk1 requirement also for carrying out these recombination events. By contrast, yku70Δ and yku70Δ rad9Δ cells are specifically defective in interchromosomal crossover recombination when Cdk1 activity is low. Thus, Cdk1 promotes DSB repair by single-strand annealing and noncrossover recombination by acting mostly at the resection level, whereas additional events require Cdk1-dependent regulation in order to generate crossover outcomes.
Zdroje
1. PâquesFHaberJE 1999 Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol Mol Biol Rev 63 349 404
2. KroghBOSymingtonLS 2004 Recombination proteins in yeast. Annu Rev Genet 38 233 271
3. San FilippoJSungPKleinH 2008 Mechanism of eukaryotic homologous recombination. Annu Rev Biochem 77 229 257
4. LiXStithCMBurgersPMHeyerWD 2009 PCNA is required for initiation of recombination-associated DNA synthesis by DNA polymerase delta. Mol Cell 36 704 713
5. SzostakJWOrr-WeaverTLRothsteinRJStahlFW 1983 The double-strand-break repair model for recombination. Cell 33 25 35
6. BzymekMThayerNHOhSDKlecknerNHunterN 2010 Double Holliday junctions are intermediates of DNA break repair. Nature 464 937 941
7. IraGMalkovaALiberiGFoianiMHaberJE 2003 Srs2 and Sgs1-Top3 suppress crossovers during double-strand break repair in yeast. Cell 115 401 411
8. WuLHicksonID 2003 The Bloom's syndrome helicase suppresses crossing over during homologous recombination. Nature 426 870 874
9. LoYCPaffettKSAmitOClikemanJASterkR 2006 Sgs1 regulates gene conversion tract lengths and crossovers independently of its helicase activity. Mol Cell Biol 26 4086 4094
10. StrathernJNKlarAJHicksJBAbrahamJAIvyJM 1982 Homothallic switching of yeast mating type cassettes is initiated by a double-stranded cut in the MAT locus. Cell 31 183 192
11. NassifNPenneyJPalSEngelsWRGloorGB 1994 Efficient copying of nonhomologous sequences from ectopic sites via P-element-induced gap repair. Mol Cell Biol 14 1613 1625
12. FergusonDOHollomanWK 1996 Recombinational repair of gaps in DNA is asymmetric in Ustilago maydis and can be explained by a migrating D-loop model. Proc Natl Acad Sci USA 93 5419 5424
13. AllersTLichtenM 2001 Differential timing and control of noncrossover and crossover recombination during meiosis. Cell 106 47 57
14. HunterNKlecknerN 2001 The single-end invasion: an asymmetric intermediate at the double-strand break to double-Holliday junction transition of meiotic recombination. Cell 106 59 70
15. JainSSugawaraNLydeardJVazeMTanguy Le GacN 2009 A recombination execution checkpoint regulates the choice of homologous recombination pathway during DNA double-strand break repair. Genes Dev 23 291 303
16. IvanovELSugawaraNFishman-LobellJHaberJE 1996 Genetic requirements for the single-strand annealing pathway of double-strand break repair in Saccharomyces cerevisiae. Genetics 142 693 704
17. AylonYLiefshitzBKupiecM 2004 The CDK regulates repair of double-strand breaks by homologous recombination during the cell cycle. EMBO J 23 4868 4875
18. IraGPellicioliABalijjaAWangXFioraniS 2004 DNA end resection, homologous recombination and DNA damage checkpoint activation require CDK1. Nature 431 1011 1017
19. LongheseMPBonettiDManfriniNClericiM 2010 Mechanisms and regulation of DNA end resection. EMBO J 29 2864 2874
20. MimitouEPSymingtonLS 2011 DNA end resection-unraveling the tail. DNA Repair 10 344 348
21. HuertasPCortés-LedesmaFSartoriAAAguileraAJacksonSP 2008 CDK targets Sae2 to control DNA-end resection and homologous recombination. Nature 455 689 692
22. ManfriniNGueriniICitterioALucchiniGLongheseMP 2010 Processing of meiotic DNA double strand breaks requires cyclin-dependent kinase and multiple nucleases. J Biol Chem 285 11628 11637
23. LeeSEMooreJKHolmesAUmezuKKolodnerRD 1998 Saccharomyces Ku70, Mre11/Rad50 and RPA proteins regulate adaptation to G2/M arrest after DNA damage. Cell 94 399 409
24. ClericiMMantieroDGueriniILucchiniGLongheseMP 2008 The Yku70–Yku80 complex contributes to regulate double-strand break processing and checkpoint activation during the cell cycle. EMBO Rep 9 810 818
25. LydallDWeinertT 1995 Yeast checkpoint genes in DNA damage processing: implications for repair and arrest. Science 270 1488 1491
26. LazzaroFSapountziVGranataMPellicioliAVazeM 2008 Histone methyltransferase Dot1 and Rad9 inhibit single-stranded DNA accumulation at DSBs and uncapped telomeres. EMBO J 27 1502 1512
27. BarlowJHRothsteinR 2009 Rad52 recruitment is DNA replication independent and regulated by Cdc28 and the Mec1 kinase. EMBO J 28 1121 1130
28. SaponaroMCallahanDZhengXKrejciLHaberJE 2010 Cdk1 targets Srs2 to complete synthesis-dependent strand annealing and to promote recombinational repair. PLoS Genet 6 e1000858 doi:10.1371/journal.pgen.1000858
29. EsashiFChristNGannonJLiuYHuntT 2005 CDK-dependent phosphorylation of BRCA2 as a regulatory mechanism for recombinational repair. Nature 434 598 604
30. CaspariTMurrayJMCarrAM 2002 Cdc2-cyclin B kinase activity links Crb2 and Rqh1-topoisomerase III. Genes Dev 16 1195 1208
31. Fishman-LobellJRudinNHaberJE 1992 Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated. Mol Cell Biol 12 1292 1303
32. VazeMBPellicioliALeeSEIraGLiberiG 2002 Recovery from checkpoint-mediated arrest after repair of a double-strand break requires Srs2 helicase. Mol Cell 10 373 385
33. BonettiDClericiMManfriniNLucchiniGLongheseMP 2010 The MRX complex plays multiple functions in resection of Yku - and Rif2-protected DNA ends. PLoS ONE 5 e14142 doi:10.1371/journal.pone.0014142
34. ShimEYChungWHNicoletteMLZhangYDavisM 2010 Saccharomyces cerevisiae Mre11/Rad50/Xrs2 and Ku proteins regulate association of Exo1 and Dna2 with DNA breaks. EMBO J 29 3370 3380
35. DesdouetsCSantocanaleCDruryLSPerkinsGFoianiM 1998 Evidence for a Cdc6-independent mitotic resetting event involving DNA polymerase α. EMBO J 17 4139 4146
36. PrakashRSatoryDDrayEPapushaASchellerJ 2009 Yeast Mph1 helicase dissociates Rad51-made D-loops: implications for crossover control in mitotic recombination. Genes Dev 23 67 79
37. AmonAIrnigerSNasmythK 1994 Closing the cell cycle circle in yeast: G2 cyclin proteolysis initiated at mitosis persists until the activation of G1 cyclins in the next cycle. Cell 77 1037 1050
38. MartiniEDiazRLHunterNKeeneyS 2006 Crossover homeostasis in yeast meiosis. Cell 126 285 295
39. YoudsJLBoultonSJ 2011 The choice in meiosis - defining the factors that influence crossover or non-crossover formation. J Cell Sci 124 501 513
40. RobertTDervinsDFabreFGangloffS 2006 Mrc1 and Srs2 are major actors in the regulation of spontaneous crossover. EMBO J 25 2837 2846
41. JessopLRockmillBRoederGSLichtenM 2006 Meiotic chromosome synapsis-promoting proteins antagonize the anti-crossover activity of Sgs1. PLoS Genet 2 e155 doi:10.1371/journal.pgen.0020155
42. SvendsenJMHarperJW 2010 GEN1/Yen1 and the SLX4 complex: Solutions to the problem of Holliday junction resolution. Genes Dev 24 521 536
43. UbersaxJAWoodburyELQuangPNParazMBlethrowJD 2003 Targets of the cyclin-dependent kinase Cdk1. Nature 425 859 864
44. SchwobEBöhmTMendenhallMDNasmythK 1994 The B-type cyclin kinase inhibitor p40SIC1 controls the G1 to S transition in S. cerevisiae. Cell 79 233 244
45. SuranaUAmonADowzerCMcGrewJByersB 1993 Destruction of the CDC28/CLB mitotic kinase is not required for the metaphase to anaphase transition in budding yeast. EMBO J 12 1969 1978
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