#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Ku Must Load Directly onto the Chromosome End in Order to Mediate Its Telomeric Functions


The Ku heterodimer associates with the Saccharomyces cerevisiae telomere, where it impacts several aspects of telomere structure and function. Although Ku avidly binds DNA ends via a preformed channel, its ability to associate with telomeres via this mechanism could be challenged by factors known to bind directly to the chromosome terminus. This has led to uncertainty as to whether Ku itself binds directly to telomeric ends and whether end association is crucial for Ku's telomeric functions. To address these questions, we constructed DNA end binding–defective Ku heterodimers by altering amino acid residues in Ku70 and Ku80 that were predicted to contact DNA. These mutants continued to associate with their known telomere-related partners, such as Sir4, a factor required for telomeric silencing, and TLC1, the RNA component of telomerase. Despite these interactions, we found that the Ku mutants had markedly reduced association with telomeric chromatin and null-like deficiencies for telomere end protection, length regulation, and silencing functions. In contrast to Ku null strains, the DNA end binding defective Ku mutants resulted in increased, rather than markedly decreased, imprecise end-joining proficiency at an induced double-strand break. This result further supports that it was the specific loss of Ku's telomere end binding that resulted in telomeric defects rather than global loss of Ku's functions. The extensive telomere defects observed in these mutants lead us to propose that Ku is an integral component of the terminal telomeric cap, where it promotes a specific architecture that is central to telomere function and maintenance.


Vyšlo v časopise: Ku Must Load Directly onto the Chromosome End in Order to Mediate Its Telomeric Functions. PLoS Genet 7(8): e32767. doi:10.1371/journal.pgen.1002233
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002233

Souhrn

The Ku heterodimer associates with the Saccharomyces cerevisiae telomere, where it impacts several aspects of telomere structure and function. Although Ku avidly binds DNA ends via a preformed channel, its ability to associate with telomeres via this mechanism could be challenged by factors known to bind directly to the chromosome terminus. This has led to uncertainty as to whether Ku itself binds directly to telomeric ends and whether end association is crucial for Ku's telomeric functions. To address these questions, we constructed DNA end binding–defective Ku heterodimers by altering amino acid residues in Ku70 and Ku80 that were predicted to contact DNA. These mutants continued to associate with their known telomere-related partners, such as Sir4, a factor required for telomeric silencing, and TLC1, the RNA component of telomerase. Despite these interactions, we found that the Ku mutants had markedly reduced association with telomeric chromatin and null-like deficiencies for telomere end protection, length regulation, and silencing functions. In contrast to Ku null strains, the DNA end binding defective Ku mutants resulted in increased, rather than markedly decreased, imprecise end-joining proficiency at an induced double-strand break. This result further supports that it was the specific loss of Ku's telomere end binding that resulted in telomeric defects rather than global loss of Ku's functions. The extensive telomere defects observed in these mutants lead us to propose that Ku is an integral component of the terminal telomeric cap, where it promotes a specific architecture that is central to telomere function and maintenance.


Zdroje

1. LingerBRPriceCM 2009 Conservation of telomere protein complexes: shuffling through evolution. Crit Rev Biochem Mol Biol 44 434 446

2. PalmWde LangeT 2008 How shelterin protects mammalian telomeres. Annu Rev Genet 42 301 334

3. De LangeT 2005 Telomere-related genome instability in cancer. Cold Spring Harb Symp Quant Biol 70 197 204

4. KonigPGiraldoRChapmanLRhodesD 1996 The crystal structure of the DNA-binding domain of yeast RAP1 in complex with telomeric DNA. Cell 85 125 136

5. CourtRChapmanLFairallLRhodesD 2005 How the human telomeric proteins TRF1 and TRF2 recognize telomeric DNA: a view from high-resolution crystal structures. EMBO Rep 6 39 45

6. Mitton-FryRMAndersonEMHughesTRLundbladVWuttkeDS 2002 Conserved structure for single-stranded telomeric DNA recognition. Science 296 145 147

7. HorvathMPSchweikerVLBevilacquaJMRugglesJASchultzSC 1998 Crystal structure of the Oxytricha nova telomere end binding protein complexed with single strand DNA. Cell 95 963 974

8. CockellMPalladinoFLarocheTKyrionGLiuC 1995 The carboxy termini of Sir4 and Rap1 affect Sir3 localization: evidence for a multicomponent complex required for yeast telomeric silencing. J Cell Biol 129 909 924

9. YeJZDonigianJRvan OverbeekMLoayzaDLuoY 2004 TIN2 binds TRF1 and TRF2 simultaneously and stabilizes the TRF2 complex on telomeres. J Biol Chem 279 47264 47271

10. KimSHBeausejourCDavalosARKaminkerPHeoSJ 2004 TIN2 mediates functions of TRF2 at human telomeres. J Biol Chem 279 43799 43804

11. LeiMPodellERCechTR 2004 Structure of human POT1 bound to telomeric single-stranded DNA provides a model for chromosome end-protection. Nat Struct Mol Biol 11 1223 1229

12. LiuDSafariAO'ConnorMSChanDWLaegelerA 2004 PTOP interacts with POT1 and regulates its localization to telomeres. Nat Cell Biol 6 673 680

13. DynanWSYooS 1998 Interaction of Ku protein and DNA-dependent protein kinase subunits with nucleic acids. Nucleic Acids Res 26 1551 1559

14. WalkerJRCorpinaRAGoldbergJ 2001 Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair. Nature 412 607 614

15. GravelSLarriveeMLabrecquePWellingerRJ 1998 Yeast Ku as a regulator of chromosomal DNA end structure. Science 280 741 745

16. WuTJChiangYHLinYCTsaiCRYuTY 2009 Sequential loading of Saccharomyces cerevisiae Ku and Cdc13p to telomeres. J Biol Chem 284 12801 12808

17. FisherTSTaggartAKZakianVA 2004 Cell cycle-dependent regulation of yeast telomerase by Ku. Nat Struct Mol Biol 11 1198 1205

18. GriffithJDComeauLRosenfieldSStanselRMBianchiA 1999 Mammalian telomeres end in a large duplex loop. Cell 97 503 514

19. de LangeT 2009 How telomeres solve the end-protection problem. Science 326 948 952

20. RoyRMeierBMcAinshADFeldmannHMJacksonSP 2004 Separation-of-function mutants of yeast Ku80 reveal a Yku80p-Sir4p interaction involved in telomeric silencing. J Biol Chem 279 86 94

21. O'ConnorMSSafariALiuDQinJSongyangZ 2004 The human Rap1 protein complex and modulation of telomere length. J Biol Chem 279 28585 28591

22. HsuHLGilleyDGalandeSAHandeMPAllenB 2000 Ku acts in a unique way at the mammalian telomere to prevent end joining. Genes Dev 14 2807 2812

23. SongKJungDJungYLeeSGLeeI 2000 Interaction of human Ku70 with TRF2. FEBS Lett 481 81 85

24. StellwagenAEHaimbergerZWVeatchJRGottschlingDE 2003 Ku interacts with telomerase RNA to promote telomere addition at native and broken chromosome ends. Genes Dev 17 2384 2395

25. MartinSGLarocheTSukaNGrunsteinMGasserSM 1999 Relocalization of telomeric Ku and SIR proteins in response to DNA strand breaks in yeast. Cell 97 621 633

26. MaringeleLLydallD 2002 ExoI-dependent single-stranded DNA at telomeres activates subsets of DNA damage and spindle checkpoint pathways in budding yeast yku70Δ mutants. Genes Dev 16 1919 1933

27. BertuchAALundbladV 2004 EXO1 contributes to telomere maintenance in both telomerase-proficient and telomerase-deficient Saccharomyces cerevisiae. Genetics 166 1651 1659

28. ZhuZChungWHShimEYLeeSEIraG 2008 Sgs1 helicase and two nucleases Dna2 and Exo1 resect DNA double-strand break ends. Cell 134 981 994

29. MimitouEPSymingtonLS 2008 Sae2, Exo1 and Sgs1 collaborate in DNA double-strand break processing. Nature 455 770 774

30. BoultonSJJacksonSP 1998 Components of the Ku-dependent non-homologous end-joining pathway are involved in telomeric length maintenance and telomeric silencing. EMBO J 17 1819 1828

31. GottschlingDEAparicioOMBillingtonBLZakianVA 1990 Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription. Cell 63 751 762

32. MishraKShoreD 1999 Yeast Ku protein plays a direct role in telomeric silencing and counteracts inhibition by rif proteins. Curr Biol 9 1123 1126

33. LuoKVega-PalasMAGrunsteinM 2002 Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast. Genes Dev 16 1528 1539

34. BertuchAALundbladV 2003 The Ku heterodimer performs separable activities at double strand breaks and chromosome termini. Mol Cell Biol 23 8202 8215

35. HedigerFNeumannFRVan HouweGDubranaKGasserSM 2002 Live imaging of telomeres: yKu and Sir proteins define redundant telomere-anchoring pathways in yeast. Curr Biol 12 2076 2089

36. TaddeiAHedigerFNeumannFRBauerCGasserSM 2004 Separation of silencing from perinuclear anchoring functions in yeast Ku80, Sir4 and Esc1 proteins. EMBO J 23 1301 1312

37. SchoberHFerreiraHKalckVGehlenLRGasserSM 2009 Yeast telomerase and the SUN domain protein Mps3 anchor telomeres and repress subtelomeric recombination. Genes Dev 23 928 938

38. ThamWHWyitheJSFerrignoPKSilverPAZakianVA 2001 Localization of yeast telomeres to the nuclear periphery is separable from transcriptional repression and telomere stability functions. Mol Cell 8 189 199

39. DrillerLWellingerRJLarriveeMKremmerEJaklinS 2000 A short C-terminal domain of Yku70p is essential for telomere maintenance. J Biol Chem 275 24921 24927

40. Ribes-ZamoraAMihalekILichtargeOBertuchAA 2007 Distinct faces of the Ku heterodimer mediate DNA repair and telomeric functions. Nat Struct Mol Biol 14 301 307

41. MilneGTJinSShannonKBWeaverDT 1996 Mutations in two Ku homologs define a DNA end-joining repair pathway in Saccharomyces cerevisiae. Mol Cell Biol 16 4189 4198

42. NugentCIBoscoGRossLOEvansSKSalingerAP 1998 Telomere maintenance is dependent on activities required for end repair of double-strand breaks. Curr Biol 8 657 660

43. LarocheTMartinSGGottaMGorhamHCPrydeFE 1998 Mutation of yeast Ku genes disrupts the subnuclear organization of telomeres. Curr Biol 8 653 656

44. LeeSEPaquesFSylvanJHaberJE 1999 Role of yeast SIR genes and mating type in directing DNA double-strand breaks to homologous and non-homologous repair paths. Curr Biol 9 767 770

45. BonettiDClericiMAnbalaganSMartinaMLucchiniG 2010 Shelterin-like proteins and Yku inhibit nucleolytic processing of Saccharomyces cerevisiae telomeres. PLoS Genet 6 e1000966 doi:10.1371/journal.pgen.1000966

46. VodenicharovMDWellingerRJ 2006 DNA degradation at unprotected telomeres in yeast is regulated by the CDK1 (Cdc28/Clb) cell-cycle kinase. Mol Cell 24 127 137

47. MarvinMEBeckerMMNoelPHardySBertuchAA 2009 The association of yKu with subtelomeric core X sequences prevents recombination involving telomeric sequences. Genetics 183 453 467, 451SI-413SI

48. MarvinMEGriffinCDEyreDEBartonDBLouisEJ 2009 In Saccharomyces cerevisiae, yKu and subtelomeric core X sequences repress homologous recombination near telomeres as part of the same pathway. Genetics 183 441 451, 441SI-412SI

49. Strahl-BolsingerSHechtALuoKGrunsteinM 1997 SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast. Genes Dev 11 83 93

50. PrydeFELouisEJ 1999 Limitations of silencing at native yeast telomeres. EMBO J 18 2538 2550

51. TaddeiAGasserSM 2004 Multiple pathways for telomere tethering: functional implications of subnuclear position for heterochromatin formation. Biochim Biophys Acta 1677 120 128

52. HedigerFBerthiauASvan HouweGGilsonEGasserSM 2006 Subtelomeric factors antagonize telomere anchoring and Tel1-independent telomere length regulation. Embo J 25 857 867

53. WangYGhoshGHendricksonEA 2009 Ku86 represses lethal telomere deletion events in human somatic cells. Proc Natl Acad Sci U S A 106 12430 12435

54. LiSMakovetsSMatsuguchiTBlethrowJDShokatKM 2009 Cdk1-dependent phosphorylation of Cdc13 coordinates telomere elongation during cell-cycle progression. Cell 136 50 61

55. LivengoodAJZaugAJCechTR 2002 Essential regions of Saccharomyces cerevisiae telomerase RNA: separate elements for Est1p and Est2p interaction. Mol Cell Biol 22 2366 2374

56. AparicioOMGeisbergJVSekingerEYangAMoqtaderiZ 2005 Chromatin immunoprecipitation for determining the association of proteins with specific genomic regions in vivo. AusubelFMBrentRKingstonREMooreDDSeidman JG etal Current Protocols in Molecular Biology: John Wiley & Sons, Inc 21.23.21 21.23.17

57. DionMFKaplanTKimMBuratowskiSFriedmanN 2007 Dynamics of replication-independent histone turnover in budding yeast. Science 315 1405 1408

58. LendvayTSMorrisDKSahJBalasubramanianBLundbladV 1996 Senescence mutants of Saccharomyces cerevisiae with a defect in telomere replication identify three additional EST genes. Genetics 144 1399 1412

Štítky
Genetika Reprodukčná medicína

Článok vyšiel v časopise

PLOS Genetics


2011 Číslo 8
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Získaná hemofilie - Povědomí o nemoci a její diagnostika
nový kurz

Eozinofilní granulomatóza s polyangiitidou
Autori: doc. MUDr. Martina Doubková, Ph.D.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#