-
Články
- Časopisy
- Kurzy
- Témy
- Kongresy
- Videa
- Podcasty
Zfp322a Regulates Mouse ES Cell Pluripotency and Enhances Reprogramming Efficiency
Embryonic stem (ES) cells derived from the inner cell mass (ICM) of blastocysts are characterised by their ability to self-renew and their potential to differentiate into many different cell types. Recent studies have shown that zinc finger proteins are crucial for maintaining pluripotent ES cells. Mouse zinc finger protein 322a (Zfp322a) is expressed in the ICM of early mouse embryos. However, little is known regarding the role of Zfp322a in the pluripotency maintenance of mouse ES cells. Here, we report that Zfp322a is required for mES cell identity since depletion of Zfp322a directs mES cells towards differentiation. Chromatin immunoprecipitation (ChIP) and dual-luciferase reporter assays revealed that Zfp322a binds to Pou5f1 and Nanog promoters and regulates their transcription. These data along with the results obtained from our ChIP-seq experiment showed that Zfp322a is an essential component of mES cell transcription regulatory network. Targets which are directly regulated by Zfp322a were identified by correlating the gene expression profile of Zfp322a RNAi-treated mES cells with the ChIP-seq results. These experiments revealed that Zfp322a inhibits mES cell differentiation by suppressing MAPK pathway. Additionally, Zfp322a is found to be a novel reprogramming factor that can replace Sox2 in the classical Yamanaka's factors (OSKM). It can be even used in combination with Yamanaka's factors and that addition leads to a higher reprogramming efficiency and to acceleration of the onset of the reprogramming process. Together, our results demonstrate that Zfp322a is a novel essential component of the transcription factor network which maintains the identity of mouse ES cells.
Vyšlo v časopise: Zfp322a Regulates Mouse ES Cell Pluripotency and Enhances Reprogramming Efficiency. PLoS Genet 10(2): e32767. doi:10.1371/journal.pgen.1004038
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1004038Souhrn
Embryonic stem (ES) cells derived from the inner cell mass (ICM) of blastocysts are characterised by their ability to self-renew and their potential to differentiate into many different cell types. Recent studies have shown that zinc finger proteins are crucial for maintaining pluripotent ES cells. Mouse zinc finger protein 322a (Zfp322a) is expressed in the ICM of early mouse embryos. However, little is known regarding the role of Zfp322a in the pluripotency maintenance of mouse ES cells. Here, we report that Zfp322a is required for mES cell identity since depletion of Zfp322a directs mES cells towards differentiation. Chromatin immunoprecipitation (ChIP) and dual-luciferase reporter assays revealed that Zfp322a binds to Pou5f1 and Nanog promoters and regulates their transcription. These data along with the results obtained from our ChIP-seq experiment showed that Zfp322a is an essential component of mES cell transcription regulatory network. Targets which are directly regulated by Zfp322a were identified by correlating the gene expression profile of Zfp322a RNAi-treated mES cells with the ChIP-seq results. These experiments revealed that Zfp322a inhibits mES cell differentiation by suppressing MAPK pathway. Additionally, Zfp322a is found to be a novel reprogramming factor that can replace Sox2 in the classical Yamanaka's factors (OSKM). It can be even used in combination with Yamanaka's factors and that addition leads to a higher reprogramming efficiency and to acceleration of the onset of the reprogramming process. Together, our results demonstrate that Zfp322a is a novel essential component of the transcription factor network which maintains the identity of mouse ES cells.
Zdroje
1. EvansMJ, KaufmanMH (1981) Establishment in culture of pluripotential cells from mouse embryos. Nature 292 : 154–156.
2. MartinGR (1981) Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells. Proc Natl Acad Sci USA 78 : 7634–7638.
3. KellerG (2005) Embryonic stem cell differentiation: emergence of a new era in biology and medicine. Genes & Development 19 : 1129–1155.
4. VitaleAM, WolvetangE, Mackay-SimA (2011) Induced pluripotent stem cells: A new technology to study human diseases. The International Journal of Biochemistry & Cell Biology 43 : 843–846.
5. AmabileG, MeissnerA (2009) Induced pluripotent stem cells: current progress and potential for regenerative medicine. Trends in Molecular Medicine 15 : 59–68.
6. TakahashiK, YamanakaS (2006) Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126 : 663–676.
7. YuJ, VodyanikMA, Smuga-OttoK, Antosiewicz-BourgetJ, FraneJL, et al. (2007) Induced pluripotent stem cell lines derived from human somatic cells. Science 318 : 1917–1920.
8. LohY-H, WuQ, ChewJ-L, VegaVB, ZhangW, et al. (2006) The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nature Genetics 38 : 431–440.
9. BoyerLA, LeeTI, ColeMF, JohnstoneSE, LevineSS, et al. (2005) Core transcriptional regulatory circuitry in human embryonic stem cells. Cell 122 : 947–956.
10. DangDT, PevsnerJ, YangVW (2000) The biology of the mammalian Krüppel-like family of transcription factors. Int J Biochem Cell Biol 32 : 1103–1121.
11. HirataT, AmanoT, NakatakeY, AmanoM, PiaoY, et al. (2012) Zscan4 transiently reactivates embryonic genes during the generation of induced pluripotent stem cells. Scientific Reports 2: srep00208.
12. FischedickG, KleinDC, WuG, EschD, HöingS, et al. (2012) Zfp296 is a novel, pluripotent-specific reprogramming factor. PLoS ONE 7: e34645.
13. ScotlandKB, ChenS, SylvesterR, GudasLJ (2009) Analysis of Rex1 (zfp42) function in embryonic stem cell differentiation. Developmental Dynamics 238 : 1863–1877.
14. WangZX, KuehJL, TehCH, RossbachM, LimL, et al. (2007) Zfp206 is a transcription factor that controls pluripotency of embryonic stem cells. Stem Cells 25 : 2173–2182.
15. Yu H-B, KunarsoG, HongFH, StantonLW (2009) Zfp206, Oct4, and Sox2 are integrated components of a transcriptional regulatory network in embryonic stem cells. Journal of Biological Chemistry 284 : 31327–31335.
16. LiY, WangY, ZhangC, YuanW, WangJ, et al. (2004) ZNF322, a novel human C2H2 Krüppel-like zinc-finger protein, regulates transcriptional activation in MAPK signaling pathways. Biochemical and Biophysical Research Communications 325 : 1383–1392.
17. ChenX, XuH, YuanP, FangF, HussM, et al. (2008) Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133 : 1106–1117.
18. YoshikawaT, PiaoY, ZhongJ, MatobaR, CarterMG, et al. (2006) High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization. Gene Expression Patterns 6 : 213–224.
19. TangF, BarbacioruC, BaoS, LeeC, NordmanE, et al. (2010) Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-seq analysis. Cell Stem Cell 6 : 468–478.
20. YingQ-L, WrayJ, NicholsJ, Batlle-MoreraL, DobleB, et al. (2008) The ground state of embryonic stem cell self-renewal. Nature 453 : 519–523.
21. NicholsJ, SilvaJ, RoodeM, SmithA (2009) Suppression of Erk signalling promotes ground state pluripotency in the mouse embryo. Development 136 : 3215–3222.
22. LiL, SunL, GaoF, JiangJ, YangY, et al. (2010) Stk40 links the pluripotency factor Oct4 to the Erk/MAPK pathway and controls extraembryonic endoderm differentiation. Proceedings of the National Academy of Sciences 107 : 1402–1407.
23. YangSH, KalkanT, MorrisroeC, SmithA, SharrocksAD (2012) A genome-wide RNAi screen reveals MAP kinase phosphatases as key ERK pathway regulators during embryonic stem cell differentiation. PLoS Genet 8: e1003112.
24. LuoY, LimCL, NicholsJ, Martinez-AriasA, WernischL (2012) Cell signalling regulates dynamics of Nanog distribution in embryonic stem cell populations. J R Soc Interface 10 : 20120525.
25. HamiltonWB, KajiK, KunathT (2013) ERK2 suppresses self-renewal capacity of embryonic stem cells, but is not required for multi-lineage commitment. PLoS One 8: e60907.
26. NiwaH, MiyazakiJ, SmithAG (2000) Quantitative expression of Oct4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat Genetics 24 : 372–376.
27. ChambersI, ColbyD, RobertsonM, NicholsJ, LeeS, et al. (2003) Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells. Cell 113 : 643–655.
28. ChewJ-L, LohY-H, ZhangW, ChenX, TamW-L, et al. (2005) Reciprocal transcriptional regulation of Pou5f1 and Sox2 via the Oct4/Sox2 complex in embryonic stem cells. Molecular and Cellular Biology 25 : 6031–6046.
29. YeomYI, FuhrmannG, OvittCE, BrehmA, OhboK, et al. (1996) Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells. Development 122 : 881–894.
30. WolfeSA, NekludovaL, PaboCO (2000) DNA recognition by Cys2His2 zinc finger proteins. Annu Rev Biophys Biomol Struct 29 : 183–212.
31. PardoM, LangB, YuL, ProsserH, BradleyA, et al. (2010) An expanded Oct4 interaction network: implications for stem cell biology, Development, and Disease. Cell Stem Cell 6 : 382–395.
32. Van den BergDLC, SnoekT, MullinNP, YatesA, BezstarostiK, et al. (2010) An Oct4-Centered Protein Interaction Network in Embryonic Stem Cells. Cell Stem Cell 6 : 369–381.
33. KimJB, ZaehresH, WuG, GentileL, KoK, et al. (2008) Pluripotent stem cells induced from adult neural stem cells by reprogramming with two factors. Nature 454 : 646–650.
34. WernigM, MeissnerA, CassadyJP, JaenischR (2008) c-Myc Is Dispensable for Direct Reprogramming of Mouse Fibroblasts. Cell Stem Cell 2 : 10–12.
35. NakagawaM, KoyanagiM, TanabeK, TakahashiK, IchisakaT, et al. (2007) Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts. Nature Biotechnology 26 : 101–106.
36. ChambersI, TomlinsonSR (2009) The transcriptional foundation of pluripotency. Development 136 : 2311–2322.
37. YeoJ-C, NgH-H (2012) The transcriptional regulation of pluripotency. Cell Research 23 : 20–32.
38. MitsuiK, TokuzawaY, ItohH, SegawaK, MurakamiM, et al. (2003) The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell 113 : 631–642.
39. LimLS, HongFH, KunarsoG, StantonLW (2010) The pluripotency regulator Zic3 is a direct activator of the Nanog promoter in ESCs. STEM CELLS 28 : 1961–1969.
40. HengJ-CD, FengB, HanJ, JiangJ, KrausP, et al. (2010) The Nuclear Receptor Nr5a2 Can Replace Oct4 in the Reprogramming of Murine Somatic Cells to Pluripotent Cells. Cell Stem Cell 6 : 167–174.
41. MasuiS, NakatakeY, ToyookaY, ShimosatoD, YagiR, et al. (2007) Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells. Nature Cell Biology 9 : 625–635.
42. HuntleyS, BaggottDM, HamiltonAT, Tran-GyamfiM, YangS, et al. (2006) A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors. Genome Research 16(5): 669–677.
43. BrayerKJ, SegalDJ (2008) Keep your fingers off my DNA: protein–protein interactions mediated by C2H2 zinc finger domains. Cell Biochemistry and Biophysics 50 : 111–131.
44. NowickK, CarneiroM, FariaR (2013) A prominent role of KRAB-ZNF transcription factors in mammalian speciation? Trends in Genetics 29(3): 130–139.
45. SilvaJ, NicholsJ, TheunissenTW, GuoG, Van OostenAL, et al. (2009) Nanog is the gateway to the pluripotent ground state. Cell 138 : 722–737.
46. LannerF, RossantJ (2010) The role of FGF/Erk signaling in pluripotent cells. Development 137 : 3351–3360.
47. LinT, AmbasudhanR, YuanX, LiW, HilcoveS, et al. (2009) A chemical platform for improved induction of human iPSCs. Nature Methods 6 : 805–808.
48. SchnerchA, CerdanC, BhatiaM (2010) Distinguishing between mouse and human pluripotent stem cell regulation: the best laid plans of mice and men. Stem Cells 28 : 419–430.
49. JaenischR, YoungR (2008) Stem cells, the molecular circuitry of pluripotentcy and nuclear reprogramming. Cell 132 : 567–582.
50. LowryWE, RichterL, YachechkoR, PyleAD, TchieuJ, et al. (2008) Generation of human induced pluripotent stem cells from dermal fibroblasts. Proceedings of the National Academy of Sciences of the United States of America 105 : 2883–2888.
51. LeeYH, MaH, TanTZ, NgSS, SoongR, et al. (2012) Protein arginine methyltransferase 6 regulates embryonic stem cell identity. Stem Cells and Development 21 : 2613–2622.
52. IrizarryRA, BolstadBM, CollinF, CopeLM, HobbsB, et al. (2003) Summaries of affymetrix genechip probe level data. Nucleic Acids Research 31: e15.
53. BoyleEI, WengS, GollubJ, JinH, BotsteinD, et al. (2004) GO::TermFinder–open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20(18): 3710–3715.
54. ChangJT, NevinsJR (2006) GATHER: A systems approach to interpreting genomic signatures. Bioinformatics 22(23): 2926–2933.
55. WuQ, BruceAW, JedrusikA, EllisPD, AndrewsRM, et al. (2009) CARM1 is required in embryonic stem cells to maintain pluripotency and resist differentiation. Stem Cells 27 : 2637–2645.
56. KharchenkoPV, TolstorukovMT, ParkPJ (2008) Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nature Biotechnology 26(12): 1351–1359.
57. JiH, JiangH, MaW, JohnsonDS, MyersRM, et al. (2008) An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nature Biotechnology 26(11): 1293–1300.
Štítky
Genetika Reprodukčná medicína
Článek Natural Polymorphisms in Influence Negative Selection and CD4∶CD8 Lineage Commitment in the RatČlánek MicroRNAs Located in the Hox Gene Clusters Are Implicated in Huntington's Disease PathogenesisČlánek Comparative RNAi Screens in and Reveal the Impact of Developmental System Drift on Gene FunctionČlánek Mutation of SLC35D3 Causes Metabolic Syndrome by Impairing Dopamine Signaling in Striatal D1 Neurons
Článok vyšiel v časopisePLOS Genetics
Najčítanejšie tento týždeň
2014 Číslo 2- Gynekologové a odborníci na reprodukční medicínu se sejdou na prvním virtuálním summitu
- Je „freeze-all“ pro všechny? Odborníci na fertilitu diskutovali na virtuálním summitu
-
Všetky články tohto čísla
- Fifteen Years Later: Hard and Soft Selection Sweeps Confirm a Large Population Number for HIV In Vivo
- The Same but Different: Worms Reveal the Pervasiveness of Developmental System Drift
- Serine Carboxypeptidase SCPEP1 and Cathepsin A Play Complementary Roles in Regulation of Vasoconstriction via Inactivation of Endothelin-1
- Coherent Functional Modules Improve Transcription Factor Target Identification, Cooperativity Prediction, and Disease Association
- A Long-Chain Flavodoxin Protects from Oxidative Stress and Host Bacterial Clearance
- Mammalian E-type Cyclins Control Chromosome Pairing, Telomere Stability and CDK2 Localization in Male Meiosis
- Influenza Virus Drug Resistance: A Time-Sampled Population Genetics Perspective
- Transcriptome-Wide Analyses of 5′-Ends in RNase J Mutants of a Gram-Positive Pathogen Reveal a Role in RNA Maturation, Regulation and Degradation
- Selective Disruption of Aurora C Kinase Reveals Distinct Functions from Aurora B Kinase during Meiosis in Mouse Oocytes
- X Chromosome Control of Meiotic Chromosome Synapsis in Mouse Inter-Subspecific Hybrids
- A Cohesin-Independent Role for NIPBL at Promoters Provides Insights in CdLS
- Extreme Population Differences in the Human Zinc Transporter ZIP4 (SLC39A4) Are Explained by Positive Selection in Sub-Saharan Africa
- Classic Selective Sweeps Revealed by Massive Sequencing in Cattle
- Genomic Networks of Hybrid Sterility
- Natural Polymorphisms in Influence Negative Selection and CD4∶CD8 Lineage Commitment in the Rat
- Oxidative Stress Is Not a Major Contributor to Somatic Mitochondrial DNA Mutations
- Molecular Identification of Collagen 17a1 as a Major Genetic Modifier of Laminin Gamma 2 Mutation-Induced Junctional Epidermolysis Bullosa in Mice
- Uncoupling of Molecular Maturation from Peripheral Target Innervation in Nociceptors Expressing a Chimeric TrkA/TrkC Receptor
- MicroRNAs Located in the Hox Gene Clusters Are Implicated in Huntington's Disease Pathogenesis
- Loss of Trabid, a New Negative Regulator of the Immune-Deficiency Pathway at the Level of TAK1, Reduces Life Span
- Targeted Ablation of Nesprin 1 and Nesprin 2 from Murine Myocardium Results in Cardiomyopathy, Altered Nuclear Morphology and Inhibition of the Biomechanical Gene Response
- Identification of Novel Genetic Loci Associated with Thyroid Peroxidase Antibodies and Clinical Thyroid Disease
- CEP-1, the p53 Homolog, Mediates Opposing Longevity Outcomes in Mitochondrial Electron Transport Chain Mutants
- Transcriptomics and Functional Genomics of ROS-Induced Cell Death Regulation by
- Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in
- Cascades of Genetic Instability Resulting from Compromised Break-Induced Replication
- Serine- and Threonine/Valine-Dependent Activation of PDK and Tor Orthologs Converge on Sch9 to Promote Aging
- Zfp322a Regulates Mouse ES Cell Pluripotency and Enhances Reprogramming Efficiency
- Insertional Mutagenesis and Deep Profiling Reveals Gene Hierarchies and a -Dependent Bottleneck in Lymphomagenesis
- DAAM Is Required for Thin Filament Formation and Sarcomerogenesis during Muscle Development in Drosophila
- Plasma Cholesterol–Induced Lesion Networks Activated before Regression of Early, Mature, and Advanced Atherosclerosis
- High-Resolution Profiling of Stationary-Phase Survival Reveals Yeast Longevity Factors and Their Genetic Interactions
- Comparative RNAi Screens in and Reveal the Impact of Developmental System Drift on Gene Function
- Accurate and Robust Genomic Prediction of Celiac Disease Using Statistical Learning
- Sex-Specific Embryonic Gene Expression in Species with Newly Evolved Sex Chromosomes
- Chromosome X-Wide Association Study Identifies Loci for Fasting Insulin and Height and Evidence for Incomplete Dosage Compensation
- Negative Feedback and Transcriptional Overshooting in a Regulatory Network for Horizontal Gene Transfer
- DNA Sequence Explains Seemingly Disordered Methylation Levels in Partially Methylated Domains of Mammalian Genomes
- Insights into the Genomic Landscape: Comparative Genomics Reveals Variations in Ploidy and Nutrient Utilisation Potential amongst Wine Isolates
- Molecular Evidence for the Inverse Comorbidity between Central Nervous System Disorders and Cancers Detected by Transcriptomic Meta-analyses
- The Centriolar Satellite Protein AZI1 Interacts with BBS4 and Regulates Ciliary Trafficking of the BBSome
- Fine-Mapping the Region Detects Common Variants Tagging a Rare Coding Allele: Evidence for Synthetic Association in Prostate Cancer
- Transmission Distortion Affecting Human Noncrossover but Not Crossover Recombination: A Hidden Source of Meiotic Drive
- A Variant in the Neuropeptide Receptor is a Major Determinant of Growth and Physiology
- Mutation of SLC35D3 Causes Metabolic Syndrome by Impairing Dopamine Signaling in Striatal D1 Neurons
- NSUN4 Is a Dual Function Mitochondrial Protein Required for Both Methylation of 12S rRNA and Coordination of Mitoribosomal Assembly
- MicroRNA-133 Inhibits Behavioral Aggregation by Controlling Dopamine Synthesis in Locusts
- Convergence of Light and ABA Signaling on the Promoter
- Arf4 Is Required for Mammalian Development but Dispensable for Ciliary Assembly
- Distinct Requirements for Cranial Ectoderm and Mesenchyme-Derived Wnts in Specification and Differentiation of Osteoblast and Dermal Progenitors
- Chk2 and P53 Regulate the Transmission of Healed Chromosomes in the Male Germline
- Ddc2 Mediates Mec1 Activation through a Ddc1- or Dpb11-Independent Mechanism
- Mapping the Fitness Landscape of Gene Expression Uncovers the Cause of Antagonism and Sign Epistasis between Adaptive Mutations
- Euchromatic Transposon Insertions Trigger Production of Novel Pi- and Endo-siRNAs at the Target Sites in the Germline
- miR-100 Induces Epithelial-Mesenchymal Transition but Suppresses Tumorigenesis, Migration and Invasion
- Canine Hereditary Ataxia in Old English Sheepdogs and Gordon Setters Is Associated with a Defect in the Autophagy Gene Encoding
- Within-Host Spatiotemporal Dynamics of Plant Virus Infection at the Cellular Level
- Analysis of Meiosis in SUN1 Deficient Mice Reveals a Distinct Role of SUN2 in Mammalian Meiotic LINC Complex Formation and Function
- Genome-Wide Association Study of Metabolic Traits Reveals Novel Gene-Metabolite-Disease Links
- Mechanistically Distinct Mouse Models for -Associated Retinopathy
- DAF-16/FoxO Directly Regulates an Atypical AMP-Activated Protein Kinase Gamma Isoform to Mediate the Effects of Insulin/IGF-1 Signaling on Aging in
- Chromosome I Controls Chromosome II Replication in
- Integrated Genomic Characterization Reveals Novel, Therapeutically Relevant Drug Targets in FGFR and EGFR Pathways in Sporadic Intrahepatic Cholangiocarcinoma
- The Iodotyrosine Deiodinase Ortholog SUP-18 Functions through a Conserved Channel SC-Box to Regulate the Muscle Two-Pore Domain Potassium Channel SUP-9
- The Genome of Highlights a Fish Pathogen Adapted to Fluctuating Environments
- Distinct DNA Binding Sites Contribute to the TCF Transcriptional Switch in and
- The Streamlined Genome of spp. Relative to Human Pathogenic Kinetoplastids Reveals a Parasite Tailored for Plants
- PLOS Genetics
- Archív čísel
- Aktuálne číslo
- Informácie o časopise
Najčítanejšie v tomto čísle- Genome-Wide Association Study of Metabolic Traits Reveals Novel Gene-Metabolite-Disease Links
- A Cohesin-Independent Role for NIPBL at Promoters Provides Insights in CdLS
- Classic Selective Sweeps Revealed by Massive Sequencing in Cattle
- Arf4 Is Required for Mammalian Development but Dispensable for Ciliary Assembly
Prihlásenie#ADS_BOTTOM_SCRIPTS#Zabudnuté hesloZadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.
- Časopisy