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Crosstalk between NSL Histone Acetyltransferase and MLL/SET Complexes: NSL Complex Functions in Promoting Histone H3K4 Di-Methylation Activity by MLL/SET Complexes
hMOF (MYST1), a histone acetyltransferase (HAT), forms at least two distinct multiprotein complexes in human cells. The male specific lethal (MSL) HAT complex plays a key role in dosage compensation in Drosophila and is responsible for histone H4K16ac in vivo. We and others previously described a second hMOF-containing HAT complex, the non-specific lethal (NSL) HAT complex. The NSL complex has a broader substrate specificity, can acetylate H4 on K16, K5, and K8. The WD (tryptophan-aspartate) repeat domain 5 (WDR5) and host cell factor 1 (HCF1) are shared among members of the MLL/SET (mixed-lineage leukemia/set-domain containing) family of histone H3K4 methyltransferase complexes. The presence of these shared subunits raises the possibility that there are functional links between these complexes and the histone modifications they catalyze; however, the degree to which NSL and MLL/SET influence one another's activities remains unclear. Here, we present evidence from biochemical assays and knockdown/overexpression approaches arguing that the NSL HAT promotes histone H3K4me2 by MLL/SET complexes by an acetylation-dependent mechanism. In genomic experiments, we identified a set of genes including ANKRD2, that are affected by knockdown of both NSL and MLL/SET subunits, suggested they are co-regulated by NSL and MLL/SET complexes. In ChIP assays, we observe that depletion of the NSL subunits hMOF or NSL1 resulted in a significant reduction of both H4K16ac and H3K4me2 in the vicinity of the ANKRD2 transcriptional start site proximal region. However, depletion of RbBP5 (a core component of MLL/SET complexes) only reduced H3K4me2 marks, but not H4K16ac in the same region of ANKRD2, consistent with the idea that NSL acts upstream of MLL/SET to regulate H3K4me2 at certain promoters, suggesting coordination between NSL and MLL/SET complexes is involved in transcriptional regulation of certain genes. Taken together, our results suggest a crosstalk between the NSL and MLL/SET complexes in cells.
Vyšlo v časopise: Crosstalk between NSL Histone Acetyltransferase and MLL/SET Complexes: NSL Complex Functions in Promoting Histone H3K4 Di-Methylation Activity by MLL/SET Complexes. PLoS Genet 9(11): e32767. doi:10.1371/journal.pgen.1003940
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1003940Souhrn
hMOF (MYST1), a histone acetyltransferase (HAT), forms at least two distinct multiprotein complexes in human cells. The male specific lethal (MSL) HAT complex plays a key role in dosage compensation in Drosophila and is responsible for histone H4K16ac in vivo. We and others previously described a second hMOF-containing HAT complex, the non-specific lethal (NSL) HAT complex. The NSL complex has a broader substrate specificity, can acetylate H4 on K16, K5, and K8. The WD (tryptophan-aspartate) repeat domain 5 (WDR5) and host cell factor 1 (HCF1) are shared among members of the MLL/SET (mixed-lineage leukemia/set-domain containing) family of histone H3K4 methyltransferase complexes. The presence of these shared subunits raises the possibility that there are functional links between these complexes and the histone modifications they catalyze; however, the degree to which NSL and MLL/SET influence one another's activities remains unclear. Here, we present evidence from biochemical assays and knockdown/overexpression approaches arguing that the NSL HAT promotes histone H3K4me2 by MLL/SET complexes by an acetylation-dependent mechanism. In genomic experiments, we identified a set of genes including ANKRD2, that are affected by knockdown of both NSL and MLL/SET subunits, suggested they are co-regulated by NSL and MLL/SET complexes. In ChIP assays, we observe that depletion of the NSL subunits hMOF or NSL1 resulted in a significant reduction of both H4K16ac and H3K4me2 in the vicinity of the ANKRD2 transcriptional start site proximal region. However, depletion of RbBP5 (a core component of MLL/SET complexes) only reduced H3K4me2 marks, but not H4K16ac in the same region of ANKRD2, consistent with the idea that NSL acts upstream of MLL/SET to regulate H3K4me2 at certain promoters, suggesting coordination between NSL and MLL/SET complexes is involved in transcriptional regulation of certain genes. Taken together, our results suggest a crosstalk between the NSL and MLL/SET complexes in cells.
Zdroje
1. BannisterA, KouzaridesT (2011) Regulation of chromatin by histone modifications. Cell Res 21 : 381–395.
2. JinJ, CaiY, LiB, ConawayRC, WorkmanJL, et al. (2005) In and out: histone variant exchange in chromatin. Trends Biochem Sci 30 : 680–687.
3. BergerSL (2007) The complex language of chromatin regulation during transcription. Nature 447 : 407–412.
4. LeeJS, SmithE, ShilatifardA (2010) The language of histone crosstalk. Cell 142 : 682–685.
5. CedarH, BergmanY (2009) Linking DNA methylation and histone modification: patterns and paradigms. Nat Rev Genet 10 : 295–304.
6. SuganumaT, WorkmanJL (2008) Crosstalk among histone modifications. Cell 135 : 604–607.
7. DaujatS, BauerUM, ShahV, TurnerB, BergerS, et al. (2002) Crosstalk between CARM1 methylation and CBP acetylation on histone H3. Curr Biol 12 : 2090–2097.
8. LeeJS, ShuklaA, SchneiderJ, SwansonSK, WashburnMP, et al. (2007) Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell 131 : 1084–1096.
9. NealKC, PannutiA, SmithER, LucchesiJC (2000) A new human member of the MYST family of histone acetyl transferases with high sequence similarity to Drosophila MOF. Biochim Biophys Acta 1490 : 170–174.
10. CarrozzaMJ, UtleyRT, WorkmanJL, CôtéJ (2003) The divers functions of histone acetyltransferase complexes. Trends Genet 19 : 321–329.
11. GuptaA, Guerin-PeyrouTG, SharmaGG, ParkC, AgarwalM, et al. (2008) The mammalian ortholog of Drosophla MOF that acetylates histone H4 lysine 16 is essential for embryogenesis and oncogenesis. Mol Cell Biol 28 : 397–409.
12. SharmaGG, SoS, GuptaA, KumarR, CayrouC, et al. (2010) Pandita TK: MOF and histone H4 acetylation at lysine 16 are critical for DNA damage response and double-strand break repair. Mol Cell Biol 30 : 3582–3595.
13. ReaS, XouriG, AkhtarA (2007) Males absent on the first (MOF): from flies to humans. Oncogene 26 : 5385–5394.
14. BhadraMP, HorikoshiN, PushpavallipvalliSN, SarkarA, et al. (2012) The role of MOF in the ionizing radiation response is conserved in Drosophila melanogaster. Chromosoma 121 : 79–90.
15. KindJ, VaquerizasJM, GebhardtP, GentzelM, LuscombeNM, et al. (2008) Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila. Cell 133 : 813–828.
16. SmithER, CayrouC, HuangR, LaneWS, CôtéJ, et al. (2005) A human protein complex homologous to the Drosophila MSL complex is responsible for the majority of histone H4 acetylation at lysine 16. Mol Cell Biol 25 : 9175–9188.
17. CaiY, JinJ, SwansonSK, ColeMD, ChoiSH, et al. (2010) Subunit composition and substrate specificity of a MOF-containing histone acetyltransferase distinct from the male-specific lethal (MSL) complex. J Biol Chem 285 : 4268–4272.
18. MendjanS, TaipaleM, KindJ, HolzH, GebhardtP, et al. (2006) Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila. Mol Cell 21 : 811–823.
19. Shogren-KnaakM, IshiiH, SunJM, PazinMJ, DavieJR, et al. (2006) Histone H4-K16 acetylation controls chromatin structure and protein interaction. Science 311 : 844–847.
20. HorikoshiN, KumarP, SharmaGG, ChenM, HuntCR, et al. (2013) Gonome-wide distribution of histone H4 Lysine 16 acetylation sites and their relationship to gene expression. Genome Integr 4 : 3 DOI: 10.1186/2041-9414-4-3
21. RajaSJ, CharapitsaI, ConradT, VaquerizasJM, GebhardtP, et al. (2010) The nonspecific lethal complex is a transcriptional regulator in Drosophila. Mol Cell 38 : 827–841.
22. FellerC, PrestelM, HartmannH, StraubT, SödingJ, et al. (2012) The MOFcontaining NSL complex associates globally with housekeeping genes, but activates only a defined subset. Nucleic Acids Res 40 : 1509–1522.
23. LamKC, MühlpfordtF, VaquerizasJM, RajaSJ, HolzH, et al. (2012) The NSL Complex Regulates Housekeeping Genes in Drosophila. Plos Genet 8 (6) e1002736.
24. JinJ, CaiY, YaoT, GottschalkAJ, FlorensL, et al. (2005) A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex. JBC 280 : 41207–41212.
25. ChoYW, HongT, HongS, GuoH, YuH, et al. (2007) PTIP associates with MLL3 - and MLL4-containing histone H3 lysine 4 methyltransferase complex. JBC 282 : 20395–20406.
26. SuganumaT, GutiérrezJL, LiB, FlorensL, SwansonSK, et al. (2008) ATAC is a double histone acetyltransferase complex that stimulates nucleosome sliding. Nat Struct Mol Biol 15 : 364–372.
27. ZippoA, SerafiniR, RocchigianiM, PennacchiniS, KrepelovaA, et al. (2009) Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcriprion elongation. Cell 138 : 1122–1136.
28. Kapoor-VaziraniP, KageyJD, VertinoPM (2011) SUV420H2-mediated H4K20 trimethylation enforces RNA polymerase II promoter-proximal pausing by blocking hMOF-dependent H4K16 acetylation. Mol Cell Biol 31 : 1594–1609.
29. KatohH, QinZS, LiuR, WangL, LiW, et al. (2011) FOXP3 orchestrates H4K16 acetylation and H3K4 trimethylation for activation of multiple genes by rectruiting MOF and causing displacement of PLU-1. Mol Cell 44 : 770–784.
30. AkhtarA, BeckerPB (2001) The histone H4 acetyltransferase MOF uses a C2HC zinc finger for substrate recognition. EMBO Rep 2 : 113–118.
31. TangJ, ChoNW, CuiG, ManionEM, ShanbhagNM, et al. (2013) Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination. Nat Struct Mol Biol 20 : 317–325.
32. LiX, WuL, CorsaCA, KunkelS, DouY (2009) Two mammalian MOF complexes regulate transcription activation by distinct mechanisms. Mol Cell 36 : 290–301.
33. MoralesV, StraubT, NeumannMF, MengusG, AkhtarA, et al. (2004) Functional integration of the histone acetyltransferase MOF into the dosage compensation complex. EMBO J 23 : 2258–2268.
34. WuL, ZeeBM, WangY, GarciaBA, DouY (2011) The RING Finger Protein MSL2 in the MOF Complex Is an E3 Ubiquitin Ligase for H2B K34 and Is Involved in Crosstalk with H3 K4 and K79 Methylation. Mol Cell 43 : 132–144.
35. SimsRJ3rd, NishiokaK, ReinbergD (2003) Histone lysine methylation: a signature for chromatin function. Trends Genet 19 : 629–639.
36. MalikS, BhaumikSR (2010) Mixed lineage leukemia: histone H3 lysine 4 methyltransferases from yeast to human. FEBS J 277 : 1805–1821.
37. ThomasT, DixonMP, KuehAJ, VossAK (2008) Mof (MYST1 or KAT8) is essential for progression of embryonic development past the blastocyst stage and required for normal chromatin architecture. Mol Cell Biol 28 : 5093–5105.
38. KojicS, RadojkovicD, FaulknerG (2011) Muscle ankyrin repeat proteins: their role in striated muscle function in health and disease. Crit Rev Clin Lab Sci 48 : 269–294.
39. DignamJD, LebovitzRM, RoederRG (1983) Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res 11 : 1475–1489.
40. CaiY, JinJ, GottschalkAJ, YaoT, ConawayJW, et al. (2006) Purification and assay of the human INO80 and SRCAP chromatin remodeling complexes. Methods 40 : 312–317.
41. WashburnMP, WoltersD, YatesJR3rd (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 19 : 242–247.
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Genetika Reprodukčná medicína
Článek Ribosome Synthesis and MAPK Activity Modulate Ionizing Radiation-Induced Germ Cell Apoptosis inČlánek Fission Yeast Shelterin Regulates DNA Polymerases and Rad3 Kinase to Limit Telomere Extension
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