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Fragilities Caused by Dosage Imbalance in Regulation of the Budding Yeast Cell Cycle


Cells can maintain their functions despite fluctuations in intracellular parameters, such as protein activities and gene expression levels. This commonly observed biological property of cells is called robustness. On the other hand, these parameters have different limitations, each reflecting the property of the subsystem containing the parameter. The budding yeast cell cycle is quite fragile upon overexpression of CDC14, but is robust upon overexpression of ESP1. The gene products of both CDC14 and ESP1 are regulated by 1∶1 binding with their inhibitors (Net1 and Pds1), and a mathematical model predicts the extreme fragility of the cell cycle upon overexpression of CDC14 and ESP1 caused by dosage imbalance between these genes. However, it has not been experimentally shown that dosage imbalance causes fragility of the cell cycle. In this study, we measured the quantitative genetic interactions of these genes by performing combinatorial “genetic tug-of-war” experiments. We first showed experimental evidence that dosage imbalance between CDC14 and NET1 causes fragility. We also showed that fragility arising from dosage imbalance between ESP1 and PDS1 is masked by CDH1 and CLB2. The masking function of CLB2 was stabilization of Pds1 by its phosphorylation. We finally modified Chen's model according to our findings. We thus propose that dosage imbalance causes fragility in biological systems.


Vyšlo v časopise: Fragilities Caused by Dosage Imbalance in Regulation of the Budding Yeast Cell Cycle. PLoS Genet 6(4): e32767. doi:10.1371/journal.pgen.1000919
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1000919

Souhrn

Cells can maintain their functions despite fluctuations in intracellular parameters, such as protein activities and gene expression levels. This commonly observed biological property of cells is called robustness. On the other hand, these parameters have different limitations, each reflecting the property of the subsystem containing the parameter. The budding yeast cell cycle is quite fragile upon overexpression of CDC14, but is robust upon overexpression of ESP1. The gene products of both CDC14 and ESP1 are regulated by 1∶1 binding with their inhibitors (Net1 and Pds1), and a mathematical model predicts the extreme fragility of the cell cycle upon overexpression of CDC14 and ESP1 caused by dosage imbalance between these genes. However, it has not been experimentally shown that dosage imbalance causes fragility of the cell cycle. In this study, we measured the quantitative genetic interactions of these genes by performing combinatorial “genetic tug-of-war” experiments. We first showed experimental evidence that dosage imbalance between CDC14 and NET1 causes fragility. We also showed that fragility arising from dosage imbalance between ESP1 and PDS1 is masked by CDH1 and CLB2. The masking function of CLB2 was stabilization of Pds1 by its phosphorylation. We finally modified Chen's model according to our findings. We thus propose that dosage imbalance causes fragility in biological systems.


Zdroje

1. AlonU

SuretteMG

BarkaiN

LeiblerS

1999 Robustness in bacterial chemotaxis. Nature 397 168 171

2. DekelE

AlonU

2005 Optimality and evolutionary tuning of the expression level of a protein. Nature 436 588 592

3. WagnerA

2005 Energy constraints on the evolution of gene expression. Mol Biol Evol 22 1365 1374

4. ZaslaverA

MayoAE

RosenbergR

BashkinP

SberroH

2004 Just-in-time transcription program in metabolic pathways. Nat Genet 36 486 491

5. BarkaiN

LeiblerS

1997 Robustness in simple biochemical networks. Nature 387 913 917

6. LittleJW

ShepleyDP

WertDW

1999 Robustness of a gene regulatory circuit. Embo J 18 4299 4307

7. von DassowG

MeirE

MunroEM

OdellGM

2000 The segment polarity network is a robust developmental module. Nature 406 188 192

8. MorganDO

2007 The Cell Cycle: Principles of Control Sunderland, MA New Science Press

9. ChenKC

CalzoneL

Csikasz-NagyA

CrossFR

NovakB

2004 Integrative analysis of cell cycle control in budding yeast. Mol Biol Cell 15 3841 3862

10. CrossFR

SchroederL

KruseM

ChenKC

2005 Quantitative characterization of a mitotic cyclin threshold regulating exit from mitosis. Mol Biol Cell 16 2129 2138

11. IronsDJ

2009 Logical analysis of the budding yeast cell cycle. J Theor Biol 257 543 559

12. LiF

LongT

LuY

OuyangQ

TangC

2004 The yeast cell-cycle network is robustly designed. Proc Natl Acad Sci U S A 101 4781 4786

13. MoriyaH

Shimizu-YoshidaY

KitanoH

2006 In vivo robustness analysis of cell division cycle genes in Saccharomyces cerevisiae. PLoS Genet 2 e111 doi:10.1371/journal.pgen.0020111

14. YiTM

HuangY

SimonMI

DoyleJ

2000 Robust perfect adaptation in bacterial chemotaxis through integral feedback control. Proc Natl Acad Sci U S A 97 4649 4653

15. AgarwalR

Cohen-FixO

2002 Phosphorylation of the mitotic regulator Pds1/securin by Cdc28 is required for efficient nuclear localization of Esp1/separase. Genes Dev 16 1371 1382

16. CioskR

ZachariaeW

MichaelisC

ShevchenkoA

MannM

1998 An ESP1/PDS1 complex regulates loss of sister chromatid cohesion at the metaphase to anaphase transition in yeast. Cell 93 1067 1076

17. ShouW

SeolJH

ShevchenkoA

BaskervilleC

MoazedD

1999 Exit from mitosis is triggered by Tem1-dependent release of the protein phosphatase Cdc14 from nucleolar RENT complex. Cell 97 233 244

18. VisintinR

HwangES

AmonA

1999 Cfi1 prevents premature exit from mitosis by anchoring Cdc14 phosphatase in the nucleolus. Nature 398 818 823

19. FutcherAB

CoxBS

1984 Copy number and the stability of 2-micron circle-based artificial plasmids of Saccharomyces cerevisiae. J Bacteriol 157 283 290

20. QueraltE

LehaneC

NovakB

UhlmannF

2006 Downregulation of PP2A(Cdc55) phosphatase by separase initiates mitotic exit in budding yeast. Cell 125 719 732

21. HoltLJ

KrutchinskyAN

MorganDO

2008 Positive feedback sharpens the anaphase switch. Nature 454 353 357

22. StemmannO

ZouH

GerberSA

GygiSP

KirschnerMW

2001 Dual inhibition of sister chromatid separation at metaphase. Cell 107 715 726

23. SullivanM

LehaneC

UhlmannF

2001 Orchestrating anaphase and mitotic exit: separase cleavage and localization of Slk19. Nat Cell Biol 3 771 777

24. UhlmannF

LottspeichF

NasmythK

1999 Sister-chromatid separation at anaphase onset is promoted by cleavage of the cohesin subunit Scc1. Nature 400 37 42

25. StegmeierF

AmonA

2004 Closing mitosis: the functions of the Cdc14 phosphatase and its regulation. Annu Rev Genet 38 203 232

26. SullivanM

UhlmannF

2003 A non-proteolytic function of separase links the onset of anaphase to mitotic exit. Nat Cell Biol 5 249 254

27. KitanoH

2004 Biological robustness. Nat Rev Genet 5 826 837

28. KitanoH

2007 A robustness-based approach to systems-oriented drug design. Nat Rev Drug Discov 6 202 210

29. VisintinR

PrinzS

AmonA

1997 CDC20 and CDH1: a family of substrate-specific activators of APC-dependent proteolysis. Science 278 460 463

30. CharlesJF

JaspersenSL

Tinker-KulbergRL

HwangL

SzidonA

1998 The Polo-related kinase Cdc5 activates and is destroyed by the mitotic cyclin destruction machinery in S. cerevisiae. Curr Biol 8 497 507

31. HildebrandtER

HoytMA

2001 Cell cycle-dependent degradation of the Saccharomyces cerevisiae spindle motor Cin8p requires APC(Cdh1) and a bipartite destruction sequence. Mol Biol Cell 12 3402 3416

32. MichaelS

TraveG

RamuC

ChicaC

GibsonTJ

2008 Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation. Bioinformatics 24 453 457

33. ShirayamaM

ZachariaeW

CioskR

NasmythK

1998 The Polo-like kinase Cdc5p and the WD-repeat protein Cdc20p/fizzy are regulators and substrates of the anaphase promoting complex in Saccharomyces cerevisiae. EMBO J 17 1336 1349

34. VisintinC

TomsonBN

RahalR

PaulsonJ

CohenM

2008 APC/C-Cdh1-mediated degradation of the Polo kinase Cdc5 promotes the return of Cdc14 into the nucleolus. Genes Dev 22 79 90

35. ShirayamaM

TothA

GalovaM

NasmythK

1999 APC(Cdc20) promotes exit from mitosis by destroying the anaphase inhibitor Pds1 and cyclin Clb5. Nature 402 203 207

36. HornigNC

KnowlesPP

McDonaldNQ

UhlmannF

2002 The dual mechanism of separase regulation by securin. Curr Biol 12 973 982

37. UhlmannF

2003 Chromosome cohesion and separation: from men and molecules. Curr Biol 13 R104 114

38. RiveraT

LosadaA

2009 Shugoshin regulates cohesion by driving relocalization of PP2A in Xenopus extracts. Chromosoma 118 223 233

39. RossKE

Cohen-FixO

2003 The role of Cdh1p in maintaining genomic stability in budding yeast. Genetics 165 489 503

40. SarinS

RossKE

BoucherL

GreenY

TyersM

2004 Uncovering novel cell cycle players through the inactivation of securin in budding yeast. Genetics 168 1763 1771

41. AndersKR

KudrnaJR

KellerKE

KinghornB

MillerEM

2009 A strategy for constructing aneuploid yeast strains by transient nondisjunction of a target chromosome. BMC Genet 10 36

42. DeutschbauerAM

JaramilloDF

ProctorM

KummJ

HillenmeyerME

2005 Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast. Genetics 169 1915 1925

43. Meeks-WagnerD

HartwellLH

1986 Normal stoichiometry of histone dimer sets is necessary for high fidelity of mitotic chromosome transmission. Cell 44 43 52

44. GhaemmaghamiS

HuhWK

BowerK

HowsonRW

BelleA

2003 Global analysis of protein expression in yeast. Nature 425 737 741

45. BuchlerNE

CrossFR

2009 Protein sequestration generates a flexible ultrasensitive response in a genetic network. Mol Syst Biol 5 272

46. FerrellJEJr

1996 Tripping the switch fantastic: how a protein kinase cascade can convert graded inputs into switch-like outputs. Trends Biochem Sci 21 460 466

47. Trinkle-MulcahyL

LamondAI

2006 Mitotic phosphatases: no longer silent partners. Curr Opin Cell Biol 18 623 631

48. BoslWJ

LiR

2005 Mitotic-exit control as an evolved complex system. Cell 121 325 333

49. IngoliaNT

MurrayAW

2004 The ups and downs of modeling the cell cycle. Curr Biol 14 R771 777

50. FunahashiA

JourakuA

MatsuokaY

KitanoH

2007 Integration of CellDesigner and SABIO-RK. In Silico Biol 7 S81 90

51. KitanoH

FunahashiA

MatsuokaY

OdaK

2005 Using process diagrams for the graphical representation of biological networks. Nat Biotechnol 23 961 966

52. ChristiansonTW

SikorskiRS

DanteM

SheroJH

HieterP

1992 Multifunctional yeast high-copy-number shuttle vectors. Gene 110 119 122

53. JaspersenSL

CharlesJF

MorganDO

1999 Inhibitory phosphorylation of the APC regulator Hct1 is controlled by the kinase Cdc28 and the phosphatase Cdc14. Curr Biol 9 227 236

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